Wall clock time and date at job start Wed Apr 1 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08988 * 109.46975 * 2 1 4 4 C 1.53000 * 109.47031 * 239.99568 * 2 1 3 5 5 C 1.53004 * 109.46610 * 175.00080 * 4 2 1 6 6 C 1.53005 * 109.46929 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47227 * 180.02562 * 6 5 4 8 8 C 1.36939 * 120.00255 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99338 * 359.97438 * 8 7 6 10 10 C 1.38808 * 120.00111 * 179.97438 * 8 7 6 11 11 N 1.31622 * 120.00202 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00042 * 179.97438 * 10 8 7 13 13 H 1.48512 * 109.47069 * 90.00216 * 12 10 8 14 14 H 1.48497 * 109.47364 * 209.99964 * 12 10 8 15 15 H 1.48503 * 109.47211 * 330.00487 * 12 10 8 16 16 N 1.46502 * 109.46929 * 119.99673 * 2 1 3 17 17 C 1.34776 * 120.00162 * 275.00233 * 16 2 1 18 18 O 1.21590 * 119.99962 * 359.97438 * 17 16 2 19 19 C 1.47582 * 120.00008 * 179.97438 * 17 16 2 20 20 C 1.38643 * 120.41844 * 354.10202 * 19 17 16 21 21 C 1.39255 * 120.72368 * 180.27148 * 20 19 17 22 22 F 1.35106 * 119.43530 * 180.02562 * 21 20 19 23 23 C 1.36548 * 121.13101 * 0.02562 * 21 20 19 24 24 C 1.40296 * 119.91678 * 0.02562 * 23 21 20 25 25 C 1.40714 * 122.07545 * 179.97438 * 24 23 21 26 26 C 1.36236 * 118.66741 * 180.02562 * 25 24 23 27 27 N 1.32521 * 121.83383 * 0.02562 * 26 25 24 28 28 C 1.31325 * 122.72974 * 359.95111 * 27 26 25 29 29 C 1.40113 * 119.92089 * 0.05282 * 28 27 26 30 30 H 1.09007 * 109.47143 * 60.00497 * 1 2 3 31 31 H 1.09005 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47306 * 300.00297 * 1 2 3 33 33 H 1.08997 * 109.47459 * 294.99738 * 4 2 1 34 34 H 1.08997 * 109.47051 * 55.00276 * 4 2 1 35 35 H 1.09002 * 109.47388 * 299.99841 * 5 4 2 36 36 H 1.08997 * 109.47254 * 60.00320 * 5 4 2 37 37 H 1.09002 * 109.46884 * 300.00062 * 6 5 4 38 38 H 1.08997 * 109.46962 * 60.00054 * 6 5 4 39 39 H 0.97010 * 120.00119 * 359.97438 * 7 6 5 40 40 H 0.96995 * 120.00502 * 179.97438 * 11 10 8 41 41 H 0.97004 * 120.00160 * 94.99532 * 16 2 1 42 42 H 1.08002 * 119.64347 * 0.27194 * 20 19 17 43 43 H 1.08002 * 120.04791 * 180.02562 * 23 21 20 44 44 H 1.08004 * 120.65985 * 0.03881 * 25 24 23 45 45 H 1.08001 * 119.08366 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.04249 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3135 6 6 4.0749 -1.3341 -2.5631 7 7 5.5349 -1.2313 -2.6244 8 6 6.2187 -1.8048 -3.6631 9 1 5.6816 -2.3332 -4.4367 10 6 7.6021 -1.7069 -3.7215 11 7 8.2567 -1.0632 -2.7783 12 14 8.5349 -2.4898 -5.1379 13 1 8.6671 -1.5093 -6.2455 14 1 9.8853 -2.8989 -4.6752 15 1 7.7937 -3.6832 -5.6191 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8582 1.1617 2.4116 19 6 2.6383 -0.7140 3.5624 20 6 2.8541 -2.0834 3.5434 21 6 3.3123 -2.7473 4.6785 22 9 3.5142 -4.0823 4.6308 23 6 3.5610 -2.0721 5.8390 24 6 3.3542 -0.6858 5.9001 25 6 3.5953 0.0548 7.0720 26 6 3.3705 1.3984 7.0540 27 7 2.9334 2.0194 5.9679 28 6 2.6884 1.3913 4.8410 29 6 2.8874 0.0071 4.7547 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.7517 -1.7716 -1.2055 34 1 1.6054 -0.2619 -2.1369 35 1 3.8532 0.4369 -1.3573 36 1 3.9994 -1.0728 -0.4258 37 1 3.7865 -2.3844 -2.5198 38 1 3.6403 -0.8743 -3.4506 39 1 6.0173 -0.7563 -1.9297 40 1 9.2234 -0.9951 -2.8188 41 1 2.2489 -1.6318 1.1528 42 1 2.6649 -2.6415 2.6383 43 1 3.9164 -2.6044 6.7089 44 1 3.9515 -0.4322 7.9678 45 1 3.5529 1.9733 7.9499 46 1 2.3334 1.9410 3.9817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755498711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:30 Heat of formation + Delta-G solvation = -42.142566 kcal Electronic energy + Delta-G solvation = -29068.644295 eV Core-core repulsion = 24871.821250 eV Total energy + Delta-G solvation = -4196.823045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.10894 -42.22756 -40.71977 -38.22114 -37.95652 -36.56586 -34.44121 -34.06037 -32.70154 -31.92115 -31.12414 -30.36050 -27.24428 -26.11394 -24.98383 -24.63834 -24.41909 -22.47806 -22.04413 -21.75683 -19.65779 -19.13657 -19.02146 -18.44363 -17.57638 -17.39422 -16.89175 -16.74831 -16.63688 -16.27246 -16.16157 -15.81871 -15.63688 -15.39953 -15.22712 -15.07048 -14.62476 -14.44169 -14.30228 -14.08627 -13.84739 -13.49182 -13.42013 -13.18979 -13.01238 -12.87521 -12.80276 -12.77236 -12.38018 -12.24877 -12.06875 -11.86005 -11.70942 -11.49721 -11.36104 -10.98557 -10.93494 -10.51818 -10.21297 -10.15978 -9.25899 -9.00897 -7.96290 -5.25589 -1.15374 -0.39384 0.45226 1.41063 1.46490 1.48605 1.57054 1.92771 2.06873 2.55332 2.86396 2.91522 3.26548 3.37542 3.38570 3.55516 3.62038 3.64608 3.72123 3.82672 3.97609 4.11385 4.17365 4.27709 4.29318 4.41312 4.44821 4.53015 4.59304 4.66660 4.71618 4.75048 4.83688 4.86204 4.88404 4.97780 5.02702 5.04380 5.13473 5.33775 5.35664 5.43389 5.45431 5.50590 5.52557 5.65917 6.26308 6.36465 6.92409 7.05657 7.31782 8.09514 8.30867 9.27486 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.002441 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.757766 B =11470.034645 C =12420.533425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.115 4.115 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.078 0.922 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.975 3.025 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.267 1.267 16 N -0.701 5.701 17 C 0.561 3.439 18 O -0.557 6.557 19 C -0.084 4.084 20 C -0.101 4.101 21 C 0.105 3.895 22 F -0.132 7.132 23 C -0.109 4.109 24 C -0.022 4.022 25 C -0.144 4.144 26 C 0.068 3.932 27 N -0.511 5.511 28 C 0.127 3.873 29 C -0.104 4.104 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.026 0.974 38 H 0.020 0.980 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.412 0.588 42 H 0.167 0.833 43 H 0.181 0.819 44 H 0.182 0.818 45 H 0.184 0.816 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.453 -2.978 20.669 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.214 1.214 14 H -0.222 1.222 15 H -0.191 1.191 16 N -0.352 5.352 17 C 0.348 3.652 18 O -0.438 6.438 19 C -0.089 4.089 20 C -0.120 4.120 21 C 0.085 3.915 22 F -0.110 7.110 23 C -0.128 4.128 24 C -0.028 4.028 25 C -0.164 4.164 26 C -0.075 4.075 27 N -0.220 5.220 28 C -0.042 4.042 29 C -0.107 4.107 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.250 0.750 42 H 0.185 0.815 43 H 0.198 0.802 44 H 0.199 0.801 45 H 0.201 0.799 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.763 -1.414 20.673 27.293 hybrid contribution 1.395 -1.493 -0.660 2.147 sum -16.368 -2.906 20.013 26.017 Atomic orbital electron populations 1.22109 0.93405 1.03192 1.02633 1.21087 0.95005 0.96830 0.83159 0.90940 1.21774 0.93440 1.02395 0.97224 1.21618 0.96582 0.99815 0.97272 1.20870 0.83073 0.97457 0.96282 1.42670 1.02630 1.65963 1.28112 1.19674 0.89997 1.26369 1.01726 0.90459 1.25621 0.97575 1.02503 1.01414 1.69826 1.07060 1.48973 1.36411 0.85118 0.77659 0.78288 0.78574 1.21418 1.22195 1.19148 1.46006 1.65614 1.14663 1.08942 1.18106 0.77429 0.86147 0.83481 1.90582 1.52000 1.16512 1.84663 1.19648 1.02464 0.93345 0.93492 1.21620 0.97638 0.93445 0.99346 1.17287 1.01272 0.77953 0.94994 1.91576 1.92567 1.29859 1.97001 1.21391 0.99739 0.92899 0.98758 1.18103 0.97324 0.93623 0.93732 1.22285 1.00612 0.95095 0.98360 1.22908 0.94581 0.93268 0.96766 1.67639 1.11994 1.41973 1.00363 1.24373 0.92234 0.91160 0.96449 1.19010 1.02092 0.95809 0.93816 0.90101 0.90819 0.93461 0.89180 0.88798 0.93457 0.92428 0.95578 0.96198 0.79740 0.94031 0.75033 0.81529 0.80187 0.80058 0.79908 0.79942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 71.98 0.68 -1.76 16 2 C 0.14 2.77 2.57 44.99 0.12 2.89 16 3 H 0.07 1.76 7.57 -2.39 -0.02 1.74 16 4 C -0.11 -2.14 4.75 30.60 0.15 -1.99 16 5 C -0.11 -3.37 5.22 30.60 0.16 -3.21 16 6 C 0.15 5.68 6.26 86.38 0.54 6.22 16 7 N -0.75 -38.56 5.60 -343.46 -1.92 -40.48 16 8 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 9 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 10 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 11 N -0.97 -60.41 13.06 21.65 0.28 -60.12 16 12 Si 0.97 46.28 29.55 68.60 2.03 48.30 16 13 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 14 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 N -0.70 -13.27 4.48 -445.66 -2.00 -15.27 16 17 C 0.56 13.24 7.70 86.71 0.67 13.91 16 18 O -0.56 -16.39 13.13 -4.00 -0.05 -16.44 16 19 C -0.08 -1.79 5.90 -19.90 -0.12 -1.91 16 20 C -0.10 -1.68 9.48 22.61 0.21 -1.47 16 21 C 0.11 1.71 7.22 22.12 0.16 1.87 16 22 F -0.13 -2.24 17.24 44.97 0.78 -1.46 16 23 C -0.11 -1.52 9.75 22.38 0.22 -1.31 16 24 C -0.02 -0.40 5.74 -21.30 -0.12 -0.52 16 25 C -0.14 -1.99 9.88 22.41 0.22 -1.77 16 26 C 0.07 1.18 11.07 84.12 0.93 2.11 16 27 N -0.51 -12.77 10.30 -195.75 -2.02 -14.79 16 28 C 0.13 3.35 10.49 85.22 0.89 4.24 16 29 C -0.10 -2.40 5.76 -21.13 -0.12 -2.52 16 30 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.71 7.75 -2.39 -0.02 1.70 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.37 20.48 7.67 -92.70 -0.71 19.77 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.41 5.90 6.67 -92.71 -0.62 5.29 16 42 H 0.17 1.93 6.42 -2.91 -0.02 1.91 16 43 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 46 H 0.18 5.36 4.97 -2.95 -0.01 5.35 16 Total: -1.00 -75.09 387.96 2.69 -72.39 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.30 Total: 30.22 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.89 Total: -2.35 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -5.65 Total: -130.66 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.05 Total: -16.44 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.78 Total: -1.46 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -75.09 2.69 -72.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755498711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.251 kcal (2) G-P(sol) polarization free energy of solvation -75.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds