Wall clock time and date at job start Wed Apr 1 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47445 * 2 1 4 4 C 1.53010 * 109.46982 * 119.99738 * 2 1 3 5 5 C 1.52994 * 109.47057 * 184.99861 * 4 2 1 6 6 C 1.53006 * 109.46728 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.46711 * 180.02562 * 6 5 4 8 8 C 1.36935 * 119.99737 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99840 * 0.02562 * 8 7 6 10 10 C 1.38814 * 120.00122 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99816 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00176 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47141 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47452 * 120.00154 * 12 10 8 15 15 H 1.48506 * 109.46997 * 240.00222 * 12 10 8 16 16 N 1.46499 * 109.47444 * 239.99684 * 2 1 3 17 17 C 1.34773 * 119.99864 * 85.00173 * 16 2 1 18 18 O 1.21558 * 120.00087 * 359.97438 * 17 16 2 19 19 C 1.47756 * 119.99963 * 180.02562 * 17 16 2 20 20 C 1.40609 * 120.27030 * 0.02562 * 19 17 16 21 21 N 1.30792 * 121.53944 * 179.97438 * 20 19 17 22 22 C 1.33823 * 121.73343 * 359.67747 * 21 20 19 23 23 C 1.40539 * 120.79256 * 179.74341 * 22 21 20 24 24 C 1.36095 * 119.84769 * 180.33514 * 23 22 21 25 25 C 1.39563 * 121.06271 * 0.26512 * 24 23 22 26 26 F 1.35097 * 119.61190 * 180.02562 * 25 24 23 27 27 C 1.36353 * 120.77579 * 359.97438 * 25 24 23 28 28 C 1.40503 * 119.60480 * 0.02887 * 27 25 24 29 29 C 1.39003 * 120.27328 * 179.97438 * 19 17 16 30 30 H 1.09005 * 109.47512 * 300.00505 * 1 2 3 31 31 H 1.09004 * 109.46901 * 59.99822 * 1 2 3 32 32 H 1.08997 * 109.47445 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46934 * 304.99961 * 4 2 1 34 34 H 1.08998 * 109.46368 * 64.99846 * 4 2 1 35 35 H 1.08999 * 109.47330 * 299.99858 * 5 4 2 36 36 H 1.08994 * 109.47225 * 60.00048 * 5 4 2 37 37 H 1.08999 * 109.47013 * 299.99947 * 6 5 4 38 38 H 1.08993 * 109.46934 * 60.00383 * 6 5 4 39 39 H 0.96996 * 120.00528 * 359.97438 * 7 6 5 40 40 H 0.96993 * 119.99940 * 179.97438 * 11 10 8 41 41 H 0.96996 * 119.99861 * 265.00790 * 16 2 1 42 42 H 1.07993 * 119.22695 * 359.97438 * 20 19 17 43 43 H 1.08002 * 120.07845 * 0.62047 * 23 22 21 44 44 H 1.08002 * 119.46826 * 180.27526 * 24 23 22 45 45 H 1.08002 * 120.19467 * 179.97438 * 27 25 24 46 46 H 1.08005 * 121.01316 * 0.02562 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.6133 1.3138 6 6 4.0747 -1.3351 2.5628 7 7 5.5347 -1.2312 2.6248 8 6 6.2185 -1.8062 3.6626 9 1 5.6815 -2.3366 4.4351 10 6 7.6020 -1.7083 3.7212 11 7 8.2565 -1.0632 2.7789 12 14 8.5348 -2.4933 5.1364 13 1 7.5744 -3.1546 6.0560 14 1 9.4855 -3.5021 4.6037 15 1 9.2861 -1.4467 5.8750 16 7 2.0184 -0.6907 -1.1961 17 6 2.1471 -0.0183 -2.3570 18 8 1.8576 1.1610 -2.4118 19 6 2.6392 -0.7150 -3.5636 20 6 2.9742 -2.0795 -3.5070 21 7 3.4116 -2.7207 -4.5597 22 6 3.5563 -2.1140 -5.7437 23 6 4.0331 -2.8209 -6.8609 24 6 4.1793 -2.1830 -8.0542 25 6 3.8680 -0.8294 -8.1900 26 9 4.0237 -0.2256 -9.3885 27 6 3.4075 -0.1093 -7.1276 28 6 3.2451 -0.7376 -5.8814 29 6 2.7737 -0.0273 -4.7640 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -0.2617 2.1370 34 1 1.7515 -1.7715 1.2056 35 1 3.9994 -1.0729 0.4261 36 1 3.8531 0.4369 1.3574 37 1 3.6400 -0.8759 3.4507 38 1 3.7863 -2.3853 2.5187 39 1 6.0171 -0.7558 1.9305 40 1 9.2231 -0.9945 2.8200 41 1 2.2490 -1.6318 -1.1525 42 1 2.8679 -2.6103 -2.5726 43 1 4.2785 -3.8690 -6.7738 44 1 4.5420 -2.7333 -8.9098 45 1 3.1698 0.9378 -7.2433 46 1 2.5233 1.0209 -4.8359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755523582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:11 Heat of formation + Delta-G solvation = -28.015915 kcal Electronic energy + Delta-G solvation = -28385.107306 eV Core-core repulsion = 24188.896838 eV Total energy + Delta-G solvation = -4196.210468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.39735 -41.40179 -39.88510 -37.28841 -36.79725 -34.90309 -33.95062 -32.81155 -31.69306 -30.51789 -30.26205 -29.36799 -25.83237 -25.30242 -24.41182 -23.09754 -22.79694 -21.76170 -20.87591 -20.78372 -19.12601 -18.32222 -17.98163 -17.12766 -17.01161 -16.37824 -16.14371 -15.69241 -15.34018 -15.12534 -14.78172 -14.68394 -14.45894 -14.30444 -14.16441 -13.78260 -13.67236 -13.56618 -13.49093 -13.14135 -12.99757 -12.75828 -12.25482 -12.13712 -11.89243 -11.88124 -11.35062 -11.21985 -11.03182 -10.87835 -10.82669 -10.58431 -10.44342 -10.40499 -9.99119 -9.83450 -9.69822 -9.36886 -9.16217 -8.87100 -8.76740 -6.91334 -5.75925 -3.04680 -0.31941 0.04368 1.31687 1.99845 2.83300 2.87218 3.43429 3.48694 3.51260 3.58293 3.63716 3.71580 3.99735 4.17616 4.26582 4.33510 4.46048 4.53617 4.59844 4.74048 4.87816 4.98473 5.08341 5.13023 5.27209 5.34464 5.38205 5.50357 5.51570 5.56058 5.57557 5.58523 5.62175 5.74187 5.90573 5.93628 6.02201 6.06630 6.17243 6.21035 6.33360 6.36395 6.39428 6.85072 6.88454 7.25406 7.35940 7.70597 7.94855 8.43111 9.53966 10.12923 10.46972 11.47111 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010100 B = 0.002161 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.690168 B =12955.165279 C =14926.537436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.124 4.124 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.713 5.713 17 C 0.566 3.434 18 O -0.534 6.534 19 C -0.183 4.183 20 C 0.164 3.836 21 N -0.466 5.466 22 C 0.132 3.868 23 C -0.062 4.062 24 C -0.125 4.125 25 C 0.102 3.898 26 F -0.135 7.135 27 C -0.125 4.125 28 C -0.090 4.090 29 C 0.011 3.989 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.401 0.599 42 H 0.166 0.834 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.474 -0.973 -21.656 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.364 5.364 17 C 0.352 3.648 18 O -0.412 6.412 19 C -0.188 4.188 20 C -0.010 4.010 21 N -0.173 5.173 22 C 0.010 3.990 23 C -0.081 4.081 24 C -0.146 4.146 25 C 0.082 3.918 26 F -0.113 7.113 27 C -0.144 4.144 28 C -0.092 4.092 29 C -0.016 4.016 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.236 0.764 42 H 0.183 0.817 43 H 0.169 0.831 44 H 0.164 0.836 45 H 0.165 0.835 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.402 -1.102 -21.595 27.141 hybrid contribution 0.783 0.257 0.339 0.891 sum -15.619 -0.846 -21.256 26.391 Atomic orbital electron populations 1.22177 0.95203 1.02148 1.02555 1.21118 0.93742 0.97894 0.83516 0.89026 1.21869 0.96946 1.00852 0.96535 1.21744 0.93571 1.01543 0.99584 1.20649 0.86211 0.96449 0.94183 1.42389 1.00205 1.66195 1.29088 1.19285 0.89447 1.26963 1.01319 0.91146 1.24761 0.96479 1.01258 0.98677 1.69672 1.07139 1.47044 1.34374 0.86115 0.79903 0.78511 0.81661 1.20552 1.21854 1.21866 1.46019 1.66709 1.14171 1.09542 1.17894 0.77714 0.86406 0.82821 1.90788 1.50259 1.15247 1.84895 1.21030 1.06220 0.96044 0.95492 1.23120 0.90484 0.90220 0.97143 1.67963 1.12994 1.38006 0.98372 1.19051 0.97069 0.90107 0.92728 1.20754 0.96645 1.00914 0.89753 1.21004 1.01138 0.92983 0.99434 1.17366 1.01601 0.91549 0.81240 1.91539 1.93289 1.83408 1.43111 1.20984 1.01291 1.01175 0.90992 1.18505 1.02022 0.94410 0.94271 1.21927 0.89466 1.00508 0.89649 0.91353 0.92280 0.92402 0.90052 0.91278 0.92079 0.91883 0.96480 0.96529 0.78347 0.93570 0.76351 0.81724 0.83147 0.83613 0.83500 0.82554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.15 0.35 -1.10 16 2 C 0.14 1.47 2.57 -67.93 -0.17 1.30 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 4 C -0.12 -1.34 4.75 -26.73 -0.13 -1.47 16 5 C -0.13 -1.91 5.22 -26.73 -0.14 -2.05 16 6 C 0.15 2.99 6.26 -4.04 -0.03 2.96 16 7 N -0.73 -18.82 5.60 -59.90 -0.34 -19.15 16 8 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 12 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 N -0.71 -7.11 4.48 -54.78 -0.25 -7.35 16 17 C 0.57 6.64 7.74 -12.37 -0.10 6.54 16 18 O -0.53 -7.90 16.04 5.31 0.09 -7.82 16 19 C -0.18 -1.89 5.89 -104.83 -0.62 -2.51 16 20 C 0.16 1.58 10.68 -17.10 -0.18 1.40 16 21 N -0.47 -5.04 10.30 -10.67 -0.11 -5.15 16 22 C 0.13 1.32 6.61 -84.78 -0.56 0.76 16 23 C -0.06 -0.48 9.97 -39.48 -0.39 -0.88 16 24 C -0.13 -0.85 9.92 -39.86 -0.40 -1.24 16 25 C 0.10 0.81 7.24 -39.77 -0.29 0.52 16 26 F -0.13 -1.15 17.25 2.25 0.04 -1.11 16 27 C -0.12 -1.00 9.73 -39.41 -0.38 -1.38 16 28 C -0.09 -0.85 5.74 -106.82 -0.61 -1.46 16 29 C 0.01 0.11 9.46 -38.43 -0.36 -0.26 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.93 7.75 -51.93 -0.40 0.52 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.40 3.17 6.63 -40.82 -0.27 2.90 16 42 H 0.17 1.16 6.37 -52.49 -0.33 0.83 16 43 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.16 1.36 7.70 -52.48 -0.40 0.96 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -34.61 393.51 -9.50 -44.12 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.31 Total: 7.23 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -4.25 Total: -6.34 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.03 Total: -59.55 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.61 -9.50 -44.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755523582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.100 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds