Wall clock time and date at job start Wed Apr 1 2020 03:51:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.34942 * 126.03823 * 2 1
4 4 C 1.35322 * 107.74449 * 180.14660 * 3 2 1
5 5 C 1.50704 * 126.03687 * 179.87403 * 4 3 2
6 6 N 1.46496 * 109.47076 * 269.71683 * 5 4 3
7 7 C 1.34775 * 119.99986 * 180.02562 * 6 5 4
8 8 O 1.21589 * 120.00064 * 359.97438 * 7 6 5
9 9 N 1.34774 * 120.00006 * 180.02562 * 7 6 5
10 10 C 1.39594 * 119.99891 * 179.97438 * 9 7 6
11 11 N 1.32266 * 119.72727 * 0.26464 * 10 9 7
12 12 C 1.31963 * 121.69068 * 180.26509 * 11 10 9
13 13 C 1.38075 * 120.95403 * 359.72759 * 12 11 10
14 14 C 1.38794 * 119.35183 * 359.97438 * 13 12 11
15 15 C 1.38781 * 118.44752 * 359.97438 * 14 13 12
16 16 O 1.35983 * 120.49767 * 179.97438 * 15 14 13
17 17 C 1.42906 * 116.99537 * 0.02562 * 16 15 14
18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15
19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16
20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17
21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17
22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18
23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18
24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19
25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19
26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19
27 27 C 1.39870 * 107.91850 * 359.61736 * 4 3 2
28 28 N 1.30835 * 108.20345 * 0.23718 * 27 4 3
29 29 H 1.09002 * 109.47419 * 270.25683 * 1 2 3
30 30 H 1.09001 * 109.47254 * 30.25389 * 1 2 3
31 31 H 1.09002 * 109.47537 * 150.25867 * 1 2 3
32 32 H 1.07995 * 126.12797 * 0.02562 * 3 2 1
33 33 H 1.08998 * 109.46536 * 149.72086 * 5 4 3
34 34 H 1.09003 * 109.47038 * 29.72128 * 5 4 3
35 35 H 0.97000 * 120.00232 * 0.02562 * 6 5 4
36 36 H 0.97000 * 120.00212 * 359.97438 * 9 7 6
37 37 H 1.08000 * 119.52770 * 179.74706 * 12 11 10
38 38 H 1.07998 * 120.32425 * 180.02562 * 13 12 11
39 39 H 1.07993 * 120.77636 * 180.02562 * 14 13 12
40 40 H 1.09000 * 109.47490 * 59.99651 * 17 16 15
41 41 H 1.09001 * 109.47232 * 299.99005 * 17 16 15
42 42 H 1.08993 * 109.46955 * 299.99993 * 18 17 16
43 43 H 1.09000 * 109.47050 * 59.99822 * 18 17 16
44 44 H 0.97002 * 120.00008 * 179.97438 * 22 21 19
45 45 H 1.08004 * 125.89461 * 180.26043 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2589 1.0912 0.0000
4 6 3.5437 0.6664 -0.0033
5 6 4.7680 1.5452 -0.0072
6 7 5.1649 1.8236 -1.3896
7 6 6.2417 2.5947 -1.6393
8 8 6.8835 3.0596 -0.7172
9 7 6.6065 2.8512 -2.9111
10 6 7.7215 3.6503 -3.1697
11 7 8.4191 4.1486 -2.1625
12 6 9.4763 4.9126 -2.3624
13 6 9.9003 5.2183 -3.6404
14 6 9.2021 4.7123 -4.7280
15 6 8.0949 3.9108 -4.4880
16 8 7.3801 3.3934 -5.5227
17 6 7.8243 3.7143 -6.8425
18 6 6.9038 3.0473 -7.8667
19 6 7.3719 3.3862 -9.2585
20 1 8.2389 4.0148 -9.3986
21 6 6.6927 2.8947 -10.3530
22 7 7.1008 3.1908 -11.5676
23 14 5.1926 1.8080 -10.1108
24 1 3.9739 2.6540 -10.0461
25 1 5.0782 0.8613 -11.2489
26 1 5.3333 1.0452 -8.8445
27 6 3.5346 -0.7322 0.0035
28 7 2.2891 -1.1328 0.0055
29 1 -0.3634 0.0046 1.0276
30 1 -0.3634 0.8877 -0.5178
31 1 -0.3634 -0.8923 -0.5098
32 1 1.9281 2.1192 0.0004
33 1 5.5820 1.0363 0.5090
34 1 4.5442 2.4824 0.5024
35 1 4.6527 1.4529 -2.1253
36 1 6.0943 2.4806 -3.6468
37 1 10.0180 5.3043 -1.5141
38 1 10.7672 5.8442 -3.7922
39 1 9.5138 4.9363 -5.7375
40 1 8.8434 3.3530 -6.9809
41 1 7.8000 4.7951 -6.9814
42 1 6.9285 1.9665 -7.7277
43 1 5.8846 3.4082 -7.7285
44 1 6.6232 2.8447 -12.3377
45 1 4.4054 -1.3712 0.0069
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186447462.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:51:51
Heat of formation + Delta-G solvation = 65.866407 kcal
Electronic energy + Delta-G solvation = -28512.951121 eV
Core-core repulsion = 24340.731658 eV
Total energy + Delta-G solvation = -4172.219463 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.64453 -40.88334 -39.47168 -37.84958 -35.45190 -34.61432 -33.46351 -33.43830
-31.68569 -31.16970 -30.64724 -29.17638 -27.84648 -25.66118 -25.33741 -23.38484
-22.74169 -21.51372 -21.06557 -20.75061 -20.45999 -18.74744 -18.20692 -17.67586
-17.04145 -16.57555 -16.00929 -15.93724 -15.90583 -15.40948 -15.33545 -14.83176
-14.56667 -14.29431 -14.21521 -14.02637 -13.94595 -13.54436 -13.34747 -13.13692
-13.03908 -12.80094 -12.55689 -12.38449 -12.17258 -12.03323 -11.23943 -11.02544
-10.98581 -10.69215 -10.45672 -10.29586 -10.14805 -9.93572 -9.85268 -9.44620
-9.26516 -9.15377 -9.06598 -8.87588 -8.69969 -7.64842 -6.20648 -4.22224
1.27485 1.41872 1.45832 2.06958 2.15465 2.74946 3.21453 3.24005
3.29499 3.32637 3.46794 4.03519 4.06089 4.08856 4.31402 4.40501
4.64826 4.66726 4.69958 4.82822 4.93869 4.96293 5.06469 5.09976
5.13188 5.25423 5.34489 5.48028 5.55781 5.78429 5.79335 5.80522
6.04861 6.17960 6.20275 6.32055 6.36824 6.41244 6.53242 6.56133
6.81173 6.97764 7.12168 7.26541 7.51288 7.64302 7.77363 8.26089
8.30671 8.64595 8.79839 9.39076 10.91802
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.007348 B = 0.002684 C = 0.002008
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3809.515239 B =10428.938027 C =13937.611940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.100 3.900
2 N -0.376 5.376
3 C 0.079 3.921
4 C -0.261 4.261
5 C 0.222 3.778
6 N -0.743 5.743
7 C 0.696 3.304
8 O -0.536 6.536
9 N -0.663 5.663
10 C 0.349 3.651
11 N -0.441 5.441
12 C 0.078 3.922
13 C -0.163 4.163
14 C -0.144 4.144
15 C 0.062 3.938
16 O -0.321 6.321
17 C 0.074 3.926
18 C -0.007 4.007
19 C -0.529 4.529
20 H 0.075 0.925
21 C 0.073 3.927
22 N -0.896 5.896
23 Si 0.881 3.119
24 H -0.275 1.275
25 H -0.286 1.286
26 H -0.264 1.264
27 C 0.066 3.934
28 N -0.298 5.298
29 H 0.076 0.924
30 H 0.089 0.911
31 H 0.090 0.910
32 H 0.177 0.823
33 H 0.075 0.925
34 H 0.071 0.929
35 H 0.396 0.604
36 H 0.419 0.581
37 H 0.157 0.843
38 H 0.134 0.866
39 H 0.146 0.854
40 H 0.058 0.942
41 H 0.058 0.942
42 H 0.028 0.972
43 H 0.023 0.977
44 H 0.266 0.734
45 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.407 -2.412 24.013 25.556
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.042 4.042
2 N -0.157 5.157
3 C -0.069 4.069
4 C -0.273 4.273
5 C 0.098 3.902
6 N -0.401 5.401
7 C 0.395 3.605
8 O -0.408 6.408
9 N -0.312 5.312
10 C 0.115 3.885
11 N -0.156 5.156
12 C -0.078 4.078
13 C -0.185 4.185
14 C -0.171 4.171
15 C 0.010 3.990
16 O -0.234 6.234
17 C 0.000 4.000
18 C -0.045 4.045
19 C -0.566 4.566
20 H 0.093 0.907
21 C -0.130 4.130
22 N -0.534 5.534
23 Si 0.708 3.292
24 H -0.201 1.201
25 H -0.211 1.211
26 H -0.188 1.188
27 C -0.120 4.120
28 N -0.118 5.118
29 H 0.094 0.906
30 H 0.107 0.893
31 H 0.109 0.891
32 H 0.194 0.806
33 H 0.093 0.907
34 H 0.089 0.911
35 H 0.230 0.770
36 H 0.256 0.744
37 H 0.174 0.826
38 H 0.152 0.848
39 H 0.163 0.837
40 H 0.077 0.923
41 H 0.076 0.924
42 H 0.046 0.954
43 H 0.041 0.959
44 H 0.076 0.924
45 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges -9.324 -3.391 25.580 27.437
hybrid contribution -0.363 0.150 -1.888 1.928
sum -9.687 -3.241 23.692 25.801
Atomic orbital electron populations
1.21909 0.73926 1.04795 1.03526 1.48562 1.06876 1.03909 1.56334
1.22475 0.90825 0.93594 1.00004 1.20088 0.94188 0.94118 1.18933
1.19220 0.92243 0.97151 0.81614 1.45342 1.30674 1.54923 1.09146
1.15965 0.81384 0.80126 0.83022 1.91030 1.53874 1.53639 1.42250
1.42515 1.28942 1.51653 1.08108 1.17489 0.89868 0.94979 0.86191
1.67641 1.06724 1.10008 1.31248 1.22433 0.93217 0.95782 0.96387
1.21894 1.01507 1.02174 0.92908 1.21606 0.95426 0.98928 1.01142
1.19496 0.94066 0.97662 0.87730 1.86044 1.52724 1.69559 1.15039
1.23123 0.99718 1.00129 0.77056 1.19580 0.95131 0.96705 0.93078
1.20816 1.15155 1.32895 0.87770 0.90706 1.24935 0.97352 0.95758
0.94939 1.69887 1.40573 1.45005 0.97912 0.86757 0.83272 0.80958
0.78244 1.20086 1.21149 1.18805 1.23898 0.95277 0.94446 0.98423
1.77437 1.01700 1.08122 1.24581 0.90591 0.89252 0.89101 0.80601
0.90700 0.91050 0.76998 0.74445 0.82613 0.84762 0.83662 0.92332
0.92369 0.95398 0.95864 0.92379 0.79745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.39 11.47 59.85 0.69 1.08 16
2 N -0.38 -2.92 4.01 -68.16 -0.27 -3.19 16
3 C 0.08 0.55 11.40 -17.22 -0.20 0.36 16
4 C -0.26 -2.11 5.47 -105.05 -0.57 -2.68 16
5 C 0.22 1.99 6.15 -5.19 -0.03 1.95 16
6 N -0.74 -7.56 5.55 -66.42 -0.37 -7.93 16
7 C 0.70 9.85 8.53 -86.92 -0.74 9.11 16
8 O -0.54 -9.49 14.59 5.29 0.08 -9.42 16
9 N -0.66 -9.42 5.40 -15.67 -0.08 -9.50 16
10 C 0.35 5.66 7.45 -154.43 -1.15 4.51 16
11 N -0.44 -7.32 7.87 -12.22 -0.10 -7.42 16
12 C 0.08 1.05 11.17 -17.56 -0.20 0.86 16
13 C -0.16 -2.01 10.10 -39.44 -0.40 -2.41 16
14 C -0.14 -2.06 9.14 -39.17 -0.36 -2.42 16
15 C 0.06 1.00 6.72 -38.92 -0.26 0.74 16
16 O -0.32 -5.58 9.39 -19.69 -0.18 -5.76 16
17 C 0.07 1.39 4.70 37.16 0.17 1.56 16
18 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16
19 C -0.53 -14.25 9.66 -34.44 -0.33 -14.58 16
20 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16
21 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16
22 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16
23 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16
24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
26 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16
27 C 0.07 0.58 11.96 -17.37 -0.21 0.38 16
28 N -0.30 -3.02 12.58 30.62 0.39 -2.63 16
29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16
31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16
33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.40 3.35 8.48 -40.82 -0.35 3.01 16
36 H 0.42 5.17 8.06 -40.82 -0.33 4.84 16
37 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16
38 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16
39 H 0.15 1.93 6.44 -52.49 -0.34 1.60 16
40 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16
41 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16
42 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16
43 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16
44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
45 H 0.19 1.24 8.06 -52.48 -0.42 0.82 16
LS Contribution 387.76 15.07 5.84 5.84
Total: -1.00 -36.01 387.76 -8.38 -44.38
By element:
Atomic # 1 Polarization: 11.17 SS G_CDS: -5.97 Total: 5.20 kcal
Atomic # 6 Polarization: 3.91 SS G_CDS: -3.81 Total: 0.10 kcal
Atomic # 7 Polarization: -56.73 SS G_CDS: 0.34 Total: -56.40 kcal
Atomic # 8 Polarization: -15.07 SS G_CDS: -0.11 Total: -15.18 kcal
Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -36.01 -8.38 -44.38 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186447462.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.251 kcal
(2) G-P(sol) polarization free energy of solvation -36.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.866 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds