Wall clock time and date at job start Wed Apr 1 2020 03:51:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.34942 * 126.03823 * 2 1
4 4 C 1.35322 * 107.74449 * 180.14660 * 3 2 1
5 5 C 1.50704 * 126.03687 * 179.87403 * 4 3 2
6 6 N 1.46496 * 109.47076 * 269.71683 * 5 4 3
7 7 C 1.34775 * 119.99986 * 180.02562 * 6 5 4
8 8 O 1.21589 * 120.00064 * 359.97438 * 7 6 5
9 9 N 1.34774 * 120.00006 * 180.02562 * 7 6 5
10 10 C 1.39594 * 119.99891 * 179.97438 * 9 7 6
11 11 N 1.32266 * 119.72727 * 0.26464 * 10 9 7
12 12 C 1.31963 * 121.69068 * 180.26509 * 11 10 9
13 13 C 1.38075 * 120.95403 * 359.72759 * 12 11 10
14 14 C 1.38794 * 119.35183 * 359.97438 * 13 12 11
15 15 C 1.38781 * 118.44752 * 359.97438 * 14 13 12
16 16 O 1.35983 * 120.49767 * 179.97438 * 15 14 13
17 17 C 1.42906 * 116.99537 * 0.02562 * 16 15 14
18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15
19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16
20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17
21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17
22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18
23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18
24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19
25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19
26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19
27 27 C 1.39870 * 107.91850 * 359.61736 * 4 3 2
28 28 N 1.30835 * 108.20345 * 0.23718 * 27 4 3
29 29 H 1.09002 * 109.47419 * 270.25683 * 1 2 3
30 30 H 1.09001 * 109.47254 * 30.25389 * 1 2 3
31 31 H 1.09002 * 109.47537 * 150.25867 * 1 2 3
32 32 H 1.07995 * 126.12797 * 0.02562 * 3 2 1
33 33 H 1.08998 * 109.46536 * 149.72086 * 5 4 3
34 34 H 1.09003 * 109.47038 * 29.72128 * 5 4 3
35 35 H 0.97000 * 120.00232 * 0.02562 * 6 5 4
36 36 H 0.97000 * 120.00212 * 359.97438 * 9 7 6
37 37 H 1.08000 * 119.52770 * 179.74706 * 12 11 10
38 38 H 1.07998 * 120.32425 * 180.02562 * 13 12 11
39 39 H 1.07993 * 120.77636 * 180.02562 * 14 13 12
40 40 H 1.09000 * 109.47490 * 59.99651 * 17 16 15
41 41 H 1.09001 * 109.47232 * 299.99005 * 17 16 15
42 42 H 1.08993 * 109.46955 * 299.99993 * 18 17 16
43 43 H 1.09000 * 109.47050 * 59.99822 * 18 17 16
44 44 H 0.97002 * 120.00008 * 179.97438 * 22 21 19
45 45 H 1.08004 * 125.89461 * 180.26043 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2589 1.0912 0.0000
4 6 3.5437 0.6664 -0.0033
5 6 4.7680 1.5452 -0.0072
6 7 5.1649 1.8236 -1.3896
7 6 6.2417 2.5947 -1.6393
8 8 6.8835 3.0596 -0.7172
9 7 6.6065 2.8512 -2.9111
10 6 7.7215 3.6503 -3.1697
11 7 8.4191 4.1486 -2.1625
12 6 9.4763 4.9126 -2.3624
13 6 9.9003 5.2183 -3.6404
14 6 9.2021 4.7123 -4.7280
15 6 8.0949 3.9108 -4.4880
16 8 7.3801 3.3934 -5.5227
17 6 7.8243 3.7143 -6.8425
18 6 6.9038 3.0473 -7.8667
19 6 7.3719 3.3862 -9.2585
20 1 8.2389 4.0148 -9.3986
21 6 6.6927 2.8947 -10.3530
22 7 7.1008 3.1908 -11.5676
23 14 5.1926 1.8080 -10.1108
24 1 3.9739 2.6540 -10.0461
25 1 5.0782 0.8613 -11.2489
26 1 5.3333 1.0452 -8.8445
27 6 3.5346 -0.7322 0.0035
28 7 2.2891 -1.1328 0.0055
29 1 -0.3634 0.0046 1.0276
30 1 -0.3634 0.8877 -0.5178
31 1 -0.3634 -0.8923 -0.5098
32 1 1.9281 2.1192 0.0004
33 1 5.5820 1.0363 0.5090
34 1 4.5442 2.4824 0.5024
35 1 4.6527 1.4529 -2.1253
36 1 6.0943 2.4806 -3.6468
37 1 10.0180 5.3043 -1.5141
38 1 10.7672 5.8442 -3.7922
39 1 9.5138 4.9363 -5.7375
40 1 8.8434 3.3530 -6.9809
41 1 7.8000 4.7951 -6.9814
42 1 6.9285 1.9665 -7.7277
43 1 5.8846 3.4082 -7.7285
44 1 6.6232 2.8447 -12.3377
45 1 4.4054 -1.3712 0.0069
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000186447462.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:51:50
Heat of formation + Delta-G solvation = 40.710501 kcal
Electronic energy + Delta-G solvation = -28514.041963 eV
Core-core repulsion = 24340.731658 eV
Total energy + Delta-G solvation = -4173.310305 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.25853 -41.98073 -40.57821 -39.10973 -36.31896 -35.73947 -35.37253 -34.03171
-33.03726 -32.51618 -31.62597 -30.27499 -28.40091 -27.28830 -26.09291 -24.64087
-23.87349 -22.55451 -22.06869 -21.72333 -21.36879 -19.85733 -19.43107 -18.99290
-18.22973 -17.66698 -17.20245 -17.16897 -16.59432 -16.53155 -16.28497 -16.10915
-15.52975 -15.41844 -15.29965 -15.13581 -14.99852 -14.72758 -14.38748 -14.09054
-13.92953 -13.76456 -13.49933 -13.38575 -13.30671 -12.96919 -12.81971 -12.69856
-12.17909 -11.85550 -11.80413 -11.65241 -11.61531 -11.55506 -11.44191 -10.79866
-10.43816 -10.39714 -10.22626 -10.00765 -9.52373 -8.78439 -8.32858 -6.39464
0.18832 0.33238 0.85093 1.33550 1.37493 1.39622 1.51016 1.64936
1.91887 2.13322 2.16702 2.34496 2.95760 3.02779 3.13509 3.58608
3.62028 3.88669 3.95027 4.01527 4.16041 4.20090 4.26397 4.28228
4.32896 4.43654 4.48526 4.50251 4.69306 4.70472 4.78316 4.84428
4.99207 5.08264 5.15118 5.18666 5.32848 5.33976 5.48815 5.51250
5.59485 5.61938 5.87253 6.06547 6.17777 6.33038 6.67256 6.67329
6.78343 7.21329 7.25746 7.60139 8.82733
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.007348 B = 0.002684 C = 0.002008
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3809.515239 B =10428.938027 C =13937.611940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.091 3.909
2 N -0.379 5.379
3 C 0.088 3.912
4 C -0.272 4.272
5 C 0.229 3.771
6 N -0.726 5.726
7 C 0.694 3.306
8 O -0.575 6.575
9 N -0.661 5.661
10 C 0.334 3.666
11 N -0.472 5.472
12 C 0.077 3.923
13 C -0.150 4.150
14 C -0.148 4.148
15 C 0.040 3.960
16 O -0.325 6.325
17 C 0.086 3.914
18 C -0.005 4.005
19 C -0.535 4.535
20 H 0.043 0.957
21 C 0.012 3.988
22 N -0.944 5.944
23 Si 0.948 3.052
24 H -0.265 1.265
25 H -0.284 1.284
26 H -0.246 1.246
27 C 0.059 3.941
28 N -0.336 5.336
29 H 0.088 0.912
30 H 0.114 0.886
31 H 0.088 0.912
32 H 0.206 0.794
33 H 0.067 0.933
34 H 0.072 0.928
35 H 0.406 0.594
36 H 0.425 0.575
37 H 0.185 0.815
38 H 0.172 0.828
39 H 0.153 0.847
40 H 0.061 0.939
41 H 0.062 0.938
42 H 0.030 0.970
43 H 0.029 0.971
44 H 0.269 0.731
45 H 0.195 0.805
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.490 -2.198 25.418 27.221
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 N -0.160 5.160
3 C -0.061 4.061
4 C -0.284 4.284
5 C 0.105 3.895
6 N -0.383 5.383
7 C 0.393 3.607
8 O -0.450 6.450
9 N -0.311 5.311
10 C 0.101 3.899
11 N -0.187 5.187
12 C -0.080 4.080
13 C -0.171 4.171
14 C -0.174 4.174
15 C -0.011 4.011
16 O -0.238 6.238
17 C 0.012 3.988
18 C -0.043 4.043
19 C -0.573 4.573
20 H 0.061 0.939
21 C -0.186 4.186
22 N -0.584 5.584
23 Si 0.771 3.229
24 H -0.190 1.190
25 H -0.210 1.210
26 H -0.169 1.169
27 C -0.127 4.127
28 N -0.157 5.157
29 H 0.106 0.894
30 H 0.133 0.867
31 H 0.107 0.893
32 H 0.223 0.777
33 H 0.086 0.914
34 H 0.090 0.910
35 H 0.242 0.758
36 H 0.263 0.737
37 H 0.202 0.798
38 H 0.190 0.810
39 H 0.170 0.830
40 H 0.079 0.921
41 H 0.080 0.920
42 H 0.048 0.952
43 H 0.048 0.952
44 H 0.078 0.922
45 H 0.212 0.788
Dipole moment (debyes) X Y Z Total
from point charges -10.447 -3.206 26.998 29.126
hybrid contribution 0.051 0.177 -2.248 2.256
sum -10.397 -3.029 24.750 27.015
Atomic orbital electron populations
1.22221 0.71966 1.05969 1.04738 1.48883 1.08073 1.03478 1.55529
1.22937 0.90386 0.94649 0.98135 1.19986 0.94317 0.93656 1.20416
1.19175 0.92452 0.97243 0.80675 1.45289 1.29360 1.53519 1.10147
1.16124 0.81806 0.80212 0.82526 1.90993 1.55370 1.55378 1.43238
1.42513 1.28698 1.51447 1.08413 1.17661 0.90519 0.95551 0.86219
1.67694 1.08008 1.11185 1.31792 1.23036 0.92344 0.94587 0.97997
1.22249 1.01833 1.01330 0.91703 1.21867 0.94953 0.98377 1.02242
1.19608 0.95167 0.99188 0.87182 1.85968 1.53170 1.70160 1.14501
1.22741 0.98776 0.99869 0.77421 1.19433 0.96027 0.97056 0.91760
1.21128 1.14030 1.31866 0.90247 0.93908 1.25885 1.00782 0.97417
0.94523 1.70031 1.42493 1.46860 0.98996 0.85692 0.79259 0.79137
0.78816 1.19025 1.21026 1.16924 1.24155 0.95427 0.95088 0.98055
1.77380 1.02439 1.09811 1.26119 0.89369 0.86714 0.89325 0.77689
0.91446 0.90981 0.75820 0.73694 0.79793 0.81041 0.82955 0.92081
0.91993 0.95209 0.95243 0.92227 0.78815
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.53 11.47 127.77 1.47 2.00 16
2 N -0.38 -5.28 4.01 -369.57 -1.48 -6.77 16
3 C 0.09 1.05 11.40 83.54 0.95 2.00 16
4 C -0.27 -4.07 5.47 -20.14 -0.11 -4.18 16
5 C 0.23 3.91 6.15 85.64 0.53 4.43 16
6 N -0.73 -14.11 5.55 -482.30 -2.68 -16.79 16
7 C 0.69 19.35 8.53 179.06 1.53 20.87 16
8 O -0.57 -20.32 14.59 -4.00 -0.06 -20.38 16
9 N -0.66 -18.44 5.40 -321.76 -1.74 -20.17 16
10 C 0.33 10.61 7.45 132.98 0.99 11.61 16
11 N -0.47 -15.19 7.87 -192.58 -1.52 -16.71 16
12 C 0.08 1.90 11.17 84.63 0.95 2.85 16
13 C -0.15 -3.27 10.10 22.36 0.23 -3.05 16
14 C -0.15 -3.96 9.14 22.53 0.21 -3.75 16
15 C 0.04 1.23 6.72 22.70 0.15 1.39 16
16 O -0.32 -10.96 9.39 -93.36 -0.88 -11.84 16
17 C 0.09 3.18 4.70 71.98 0.34 3.52 16
18 C -0.01 -0.23 4.41 29.85 0.13 -0.10 16
19 C -0.53 -29.07 9.66 25.60 0.25 -28.82 16
20 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16
21 C 0.01 0.67 5.47 84.65 0.46 1.13 16
22 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16
23 Si 0.95 42.13 27.47 68.60 1.88 44.01 16
24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16
25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16
26 H -0.25 -10.13 6.54 99.48 0.65 -9.48 16
27 C 0.06 1.00 11.96 85.24 1.02 2.02 16
28 N -0.34 -6.60 12.58 -57.02 -0.72 -7.31 16
29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16
30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16
31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16
32 H 0.21 1.08 8.06 -2.91 -0.02 1.05 16
33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
34 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16
35 H 0.41 6.36 8.48 -92.71 -0.79 5.57 16
36 H 0.42 10.20 8.06 -92.71 -0.75 9.45 16
37 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16
38 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16
39 H 0.15 3.80 6.44 -2.91 -0.02 3.78 16
40 H 0.06 2.19 7.70 -2.39 -0.02 2.17 16
41 H 0.06 2.21 7.70 -2.39 -0.02 2.19 16
42 H 0.03 1.30 7.20 -2.39 -0.02 1.29 16
43 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16
44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16
45 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16
Total: -1.00 -78.91 387.76 1.66 -77.25
By element:
Atomic # 1 Polarization: 23.86 SS G_CDS: -0.54 Total: 23.32 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: 9.08 Total: 11.92 kcal
Atomic # 7 Polarization: -116.46 SS G_CDS: -7.83 Total: -124.29 kcal
Atomic # 8 Polarization: -31.28 SS G_CDS: -0.93 Total: -32.21 kcal
Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.01 kcal
Total: -78.91 1.66 -77.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186447462.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.964 kcal
(2) G-P(sol) polarization free energy of solvation -78.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.053 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.711 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds