Wall clock time and date at job start Wed Apr 1 2020 03:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.35972 * 119.60739 * 270.00202 * 3 2 1 5 5 C 1.35868 * 120.59285 * 180.02562 * 4 3 2 6 6 N 1.40442 * 120.08481 * 180.27388 * 5 4 3 7 7 C 1.34783 * 119.99886 * 237.00033 * 6 5 4 8 8 O 1.21597 * 120.00108 * 5.06310 * 7 6 5 9 9 N 1.34777 * 119.99657 * 185.06030 * 7 6 5 10 10 C 1.40187 * 119.99683 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.97166 * 359.71646 * 10 9 7 12 12 C 1.35245 * 107.86186 * 179.88546 * 11 10 9 13 13 C 1.50705 * 126.06889 * 180.09529 * 12 11 10 14 14 N 1.34966 * 107.86168 * 0.37233 * 12 11 10 15 15 C 1.46495 * 125.97664 * 179.72797 * 14 12 11 16 16 C 1.50704 * 109.47056 * 270.01669 * 15 14 12 17 17 H 1.08001 * 120.00119 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00013 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99847 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99816 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47208 * 90.00114 * 20 18 16 22 22 H 1.48504 * 109.47164 * 209.99926 * 20 18 16 23 23 H 1.48505 * 109.47355 * 330.00234 * 20 18 16 24 24 N 1.31206 * 125.96954 * 180.02562 * 10 9 7 25 25 C 1.40627 * 119.83055 * 359.97438 * 5 4 3 26 26 C 1.36353 * 119.24389 * 0.02562 * 25 5 4 27 27 C 1.34627 * 119.61109 * 90.00040 * 3 2 1 28 28 O 1.22104 * 119.92632 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.46783 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47047 * 300.00084 * 1 2 3 31 31 H 1.08996 * 109.47121 * 60.00129 * 1 2 3 32 32 H 1.09001 * 109.47047 * 239.99916 * 2 1 3 33 33 H 1.08996 * 109.47121 * 119.99871 * 2 1 3 34 34 H 1.07998 * 119.70863 * 0.02562 * 4 3 2 35 35 H 0.96994 * 120.00100 * 57.00173 * 6 5 4 36 36 H 0.96995 * 119.99991 * 359.97438 * 9 7 6 37 37 H 1.07997 * 126.06498 * 0.03490 * 11 10 9 38 38 H 1.08998 * 109.47073 * 270.32683 * 13 12 11 39 39 H 1.09005 * 109.46417 * 30.32255 * 13 12 11 40 40 H 1.08994 * 109.47172 * 150.32001 * 13 12 11 41 41 H 1.09000 * 109.47037 * 30.01350 * 15 14 12 42 42 H 1.08998 * 109.47429 * 150.01834 * 15 14 12 43 43 H 0.97005 * 119.99862 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.37541 * 180.02562 * 25 5 4 45 45 H 1.08001 * 120.30210 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2422 2.0146 -1.1822 5 6 2.6955 3.2952 -1.2056 6 7 2.9176 3.9412 -2.4327 7 6 4.1339 4.4475 -2.7173 8 8 5.0622 4.2653 -1.9534 9 7 4.3211 5.1557 -3.8486 10 6 5.5862 5.6818 -4.1449 11 6 6.7389 5.5529 -3.3537 12 6 7.7485 6.1954 -3.9838 13 6 9.1691 6.3112 -3.4941 14 7 7.2565 6.7197 -5.1260 15 6 8.0106 7.5021 -6.1086 16 6 7.9334 8.9644 -5.7524 17 1 7.3778 9.2795 -4.8814 18 6 8.5720 9.9001 -6.5384 19 7 8.5051 11.1761 -6.2272 20 14 9.5335 9.3551 -8.0443 21 1 8.6350 9.3400 -9.2266 22 1 10.6532 10.3004 -8.2856 23 1 10.0768 7.9916 -7.8181 24 7 5.8987 6.3857 -5.2072 25 6 2.9357 3.9744 0.0022 26 6 2.7089 3.3328 1.1837 27 6 2.2401 2.0084 1.1704 28 8 2.0333 1.4249 2.2229 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0581 1.4952 -2.1110 35 1 2.1958 4.0229 -3.0754 36 1 3.5806 5.3006 -4.4581 37 1 6.8077 5.0310 -2.4107 38 1 9.2684 7.2027 -2.8749 39 1 9.4233 5.4298 -2.9054 40 1 9.8428 6.3848 -4.3477 41 1 9.0525 7.1820 -6.1056 42 1 7.5856 7.3468 -7.1002 43 1 8.9541 11.8344 -6.7804 44 1 3.2956 4.9927 -0.0061 45 1 2.8872 3.8383 2.1213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271082052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:19 Heat of formation + Delta-G solvation = 65.781860 kcal Electronic energy + Delta-G solvation = -28922.170205 eV Core-core repulsion = 24749.947076 eV Total energy + Delta-G solvation = -4172.223129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80320 -40.91145 -39.88212 -37.37522 -36.08491 -34.89460 -34.09387 -33.26046 -31.57280 -31.25035 -31.13565 -29.07729 -27.08790 -26.44359 -25.16410 -24.06618 -23.22070 -22.38909 -21.45635 -20.17034 -19.71443 -18.50820 -17.98954 -17.58105 -17.14604 -16.98756 -16.31221 -16.02237 -15.68599 -15.41635 -15.08047 -14.68562 -14.61576 -14.48728 -14.30512 -13.86243 -13.48116 -13.37456 -13.17214 -12.81331 -12.64200 -12.62183 -12.43998 -12.33480 -12.03590 -11.94044 -11.69320 -11.62104 -11.30040 -10.83580 -10.65210 -10.56406 -10.24104 -10.20154 -10.01109 -9.85574 -9.80089 -9.61453 -8.80636 -8.14039 -8.02439 -7.51252 -6.28509 -4.31708 0.48847 1.41400 1.95365 2.44161 2.48692 2.93333 3.13330 3.19104 3.20692 3.32772 3.39718 3.68500 4.05856 4.13916 4.19122 4.24976 4.55107 4.60074 4.66566 4.79759 4.88459 4.99831 5.13862 5.26313 5.30678 5.45729 5.57407 5.59441 5.70724 5.74654 5.79427 6.00731 6.03145 6.08190 6.28550 6.33538 6.39762 6.43954 6.55564 6.68667 6.74317 6.89991 7.26212 7.36145 7.71571 7.73372 7.81942 8.28541 8.38432 8.52568 8.76826 9.26529 10.83945 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.029228 B = 0.001879 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.753137 B =14901.386483 C =15120.162104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.088 3.912 3 N -0.489 5.489 4 C 0.117 3.883 5 C 0.065 3.935 6 N -0.682 5.682 7 C 0.714 3.286 8 O -0.549 6.549 9 N -0.639 5.639 10 C 0.284 3.716 11 C -0.286 4.286 12 C 0.096 3.904 13 C -0.085 4.085 14 N -0.317 5.317 15 C 0.232 3.768 16 C -0.541 4.541 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.886 5.886 20 Si 0.874 3.126 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.319 5.319 25 C -0.002 4.002 26 C -0.231 4.231 27 C 0.513 3.487 28 O -0.553 6.553 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.406 0.594 36 H 0.409 0.591 37 H 0.163 0.837 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.269 0.731 44 H 0.139 0.861 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 -20.787 7.526 26.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.033 4.033 3 N -0.201 5.201 4 C -0.013 4.013 5 C -0.033 4.033 6 N -0.336 5.336 7 C 0.413 3.587 8 O -0.422 6.422 9 N -0.289 5.289 10 C 0.031 3.969 11 C -0.317 4.317 12 C -0.035 4.035 13 C -0.144 4.144 14 N -0.099 5.099 15 C 0.113 3.887 16 C -0.579 4.579 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.523 5.523 20 Si 0.700 3.300 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.189 1.189 24 N -0.149 5.149 25 C -0.025 4.025 26 C -0.253 4.253 27 C 0.315 3.685 28 O -0.436 6.436 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.181 0.819 35 H 0.243 0.757 36 H 0.243 0.757 37 H 0.180 0.820 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.157 0.843 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.789 -20.574 7.666 25.927 hybrid contribution -0.039 -0.032 -1.025 1.026 sum -13.828 -20.606 6.642 25.689 Atomic orbital electron populations 1.22125 0.94124 1.03302 1.03016 1.21984 0.95833 0.80361 1.05147 1.45404 1.53959 1.14593 1.06151 1.21710 0.97658 0.91739 0.90159 1.16280 1.10177 0.91307 0.85549 1.42126 1.11794 1.61422 1.18265 1.15599 0.82850 0.78730 0.81484 1.90927 1.39719 1.62295 1.49299 1.41274 1.09964 1.54563 1.23056 1.18599 0.85171 0.98044 0.95124 1.21244 0.90273 1.14771 1.05384 1.21064 0.97122 0.96756 0.88545 1.20361 0.89491 1.02979 1.01546 1.48502 1.04721 1.39199 1.17455 1.20006 0.90160 0.91533 0.87039 1.21171 1.34674 0.87893 1.14169 0.90101 1.24811 0.95692 0.94666 0.97387 1.69871 1.42861 1.00599 1.38945 0.86891 0.80344 0.79139 0.83616 1.19658 1.20540 1.18890 1.77251 0.94736 1.21620 1.21320 1.21562 0.89930 1.00175 0.90832 1.22024 1.08942 0.94569 0.99788 1.17165 0.80331 0.88232 0.82726 1.90967 1.55213 1.67922 1.29519 0.90519 0.91569 0.92085 0.89023 0.87943 0.81857 0.75722 0.75653 0.81994 0.90027 0.90623 0.91109 0.93189 0.93666 0.92110 0.84285 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.09 0.49 6.05 -4.04 -0.02 0.47 16 3 N -0.49 -3.93 2.59 -119.57 -0.31 -4.24 16 4 C 0.12 0.76 10.20 -16.57 -0.17 0.59 16 5 C 0.07 0.55 5.70 -83.86 -0.48 0.07 16 6 N -0.68 -5.41 5.30 -14.36 -0.08 -5.48 16 7 C 0.71 9.07 8.34 -86.91 -0.72 8.34 16 8 O -0.55 -9.02 12.87 5.28 0.07 -8.95 16 9 N -0.64 -8.67 5.45 -15.51 -0.08 -8.75 16 10 C 0.28 5.36 8.11 -154.37 -1.25 4.11 16 11 C -0.29 -5.55 9.52 -39.83 -0.38 -5.93 16 12 C 0.10 1.92 6.92 -82.28 -0.57 1.35 16 13 C -0.09 -1.39 10.11 36.01 0.36 -1.02 16 14 N -0.32 -7.10 3.59 -58.33 -0.21 -7.31 16 15 C 0.23 5.43 5.06 -5.19 -0.03 5.41 16 16 C -0.54 -14.86 9.94 -34.44 -0.34 -15.21 16 17 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 18 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 19 N -0.89 -25.97 13.96 55.43 0.77 -25.19 16 20 Si 0.87 19.81 27.47 -169.99 -4.67 15.14 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 24 N -0.32 -6.90 12.59 31.44 0.40 -6.51 16 25 C 0.00 -0.02 9.05 -39.36 -0.36 -0.38 16 26 C -0.23 -2.39 9.98 -39.41 -0.39 -2.78 16 27 C 0.51 5.83 7.40 -15.47 -0.11 5.71 16 28 O -0.55 -8.05 16.63 4.82 0.08 -7.97 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.27 8.02 -51.93 -0.42 -0.15 16 33 H 0.10 0.72 7.38 -51.93 -0.38 0.33 16 34 H 0.16 0.49 8.04 -52.49 -0.42 0.07 16 35 H 0.41 1.72 8.84 -40.82 -0.36 1.36 16 36 H 0.41 4.15 8.84 -40.82 -0.36 3.79 16 37 H 0.16 3.09 5.91 -52.49 -0.31 2.78 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.11 7.07 -51.93 -0.37 0.75 16 41 H 0.05 1.09 6.09 -51.93 -0.32 0.78 16 42 H 0.05 1.05 7.57 -51.93 -0.39 0.66 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -37.03 384.27 -8.30 -45.34 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.88 Total: 5.75 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -4.18 Total: 2.40 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.49 Total: -57.49 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.15 Total: -16.93 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.03 -8.30 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271082052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.117 kcal (2) G-P(sol) polarization free energy of solvation -37.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds