Wall clock time and date at job start Wed Apr 1 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.35972 * 119.60739 * 270.00202 * 3 2 1 5 5 C 1.35868 * 120.59285 * 180.02562 * 4 3 2 6 6 N 1.40442 * 120.08481 * 180.27388 * 5 4 3 7 7 C 1.34783 * 119.99886 * 237.00033 * 6 5 4 8 8 O 1.21597 * 120.00108 * 5.06310 * 7 6 5 9 9 N 1.34777 * 119.99657 * 185.06030 * 7 6 5 10 10 C 1.40187 * 119.99683 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.97166 * 359.71646 * 10 9 7 12 12 C 1.35245 * 107.86186 * 179.88546 * 11 10 9 13 13 C 1.50705 * 126.06889 * 180.09529 * 12 11 10 14 14 N 1.34966 * 107.86168 * 0.37233 * 12 11 10 15 15 C 1.46495 * 125.97664 * 179.72797 * 14 12 11 16 16 C 1.50704 * 109.47056 * 270.01669 * 15 14 12 17 17 H 1.08001 * 120.00119 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00013 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99847 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99816 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47208 * 90.00114 * 20 18 16 22 22 H 1.48504 * 109.47164 * 209.99926 * 20 18 16 23 23 H 1.48505 * 109.47355 * 330.00234 * 20 18 16 24 24 N 1.31206 * 125.96954 * 180.02562 * 10 9 7 25 25 C 1.40627 * 119.83055 * 359.97438 * 5 4 3 26 26 C 1.36353 * 119.24389 * 0.02562 * 25 5 4 27 27 C 1.34627 * 119.61109 * 90.00040 * 3 2 1 28 28 O 1.22104 * 119.92632 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.46783 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47047 * 300.00084 * 1 2 3 31 31 H 1.08996 * 109.47121 * 60.00129 * 1 2 3 32 32 H 1.09001 * 109.47047 * 239.99916 * 2 1 3 33 33 H 1.08996 * 109.47121 * 119.99871 * 2 1 3 34 34 H 1.07998 * 119.70863 * 0.02562 * 4 3 2 35 35 H 0.96994 * 120.00100 * 57.00173 * 6 5 4 36 36 H 0.96995 * 119.99991 * 359.97438 * 9 7 6 37 37 H 1.07997 * 126.06498 * 0.03490 * 11 10 9 38 38 H 1.08998 * 109.47073 * 270.32683 * 13 12 11 39 39 H 1.09005 * 109.46417 * 30.32255 * 13 12 11 40 40 H 1.08994 * 109.47172 * 150.32001 * 13 12 11 41 41 H 1.09000 * 109.47037 * 30.01350 * 15 14 12 42 42 H 1.08998 * 109.47429 * 150.01834 * 15 14 12 43 43 H 0.97005 * 119.99862 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.37541 * 180.02562 * 25 5 4 45 45 H 1.08001 * 120.30210 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2422 2.0146 -1.1822 5 6 2.6955 3.2952 -1.2056 6 7 2.9176 3.9412 -2.4327 7 6 4.1339 4.4475 -2.7173 8 8 5.0622 4.2653 -1.9534 9 7 4.3211 5.1557 -3.8486 10 6 5.5862 5.6818 -4.1449 11 6 6.7389 5.5529 -3.3537 12 6 7.7485 6.1954 -3.9838 13 6 9.1691 6.3112 -3.4941 14 7 7.2565 6.7197 -5.1260 15 6 8.0106 7.5021 -6.1086 16 6 7.9334 8.9644 -5.7524 17 1 7.3778 9.2795 -4.8814 18 6 8.5720 9.9001 -6.5384 19 7 8.5051 11.1761 -6.2272 20 14 9.5335 9.3551 -8.0443 21 1 8.6350 9.3400 -9.2266 22 1 10.6532 10.3004 -8.2856 23 1 10.0768 7.9916 -7.8181 24 7 5.8987 6.3857 -5.2072 25 6 2.9357 3.9744 0.0022 26 6 2.7089 3.3328 1.1837 27 6 2.2401 2.0084 1.1704 28 8 2.0333 1.4249 2.2229 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0581 1.4952 -2.1110 35 1 2.1958 4.0229 -3.0754 36 1 3.5806 5.3006 -4.4581 37 1 6.8077 5.0310 -2.4107 38 1 9.2684 7.2027 -2.8749 39 1 9.4233 5.4298 -2.9054 40 1 9.8428 6.3848 -4.3477 41 1 9.0525 7.1820 -6.1056 42 1 7.5856 7.3468 -7.1002 43 1 8.9541 11.8344 -6.7804 44 1 3.2956 4.9927 -0.0061 45 1 2.8872 3.8383 2.1213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271082052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:18 Heat of formation + Delta-G solvation = 39.549694 kcal Electronic energy + Delta-G solvation = -28923.307717 eV Core-core repulsion = 24749.947076 eV Total energy + Delta-G solvation = -4173.360641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.60621 -42.25240 -41.02193 -38.28069 -36.88213 -36.18319 -35.30429 -34.75369 -33.10124 -32.76954 -31.79463 -29.96697 -28.78061 -27.86681 -25.79610 -25.07882 -24.38445 -23.61473 -22.42219 -21.41548 -21.08487 -19.49989 -19.21137 -18.85011 -18.42089 -17.87020 -17.50087 -17.03695 -16.73307 -16.65339 -16.33117 -15.97502 -15.71322 -15.43077 -15.30858 -14.87730 -14.84064 -14.53401 -14.17078 -13.96400 -13.84383 -13.75454 -13.64427 -13.49073 -13.22352 -13.04485 -12.85611 -12.71872 -12.55466 -12.24772 -12.09842 -11.81329 -11.60126 -11.42482 -11.31148 -11.20217 -11.07266 -10.87868 -10.64079 -9.57727 -9.09695 -8.81218 -8.38327 -6.49203 -0.20252 0.57655 0.95411 1.09020 1.37222 1.39139 1.48599 1.57992 1.68345 2.08198 2.28431 2.35066 2.58353 2.94326 3.05517 3.65289 3.69319 3.84068 3.88868 4.04492 4.13812 4.14951 4.21620 4.41804 4.44990 4.54644 4.61973 4.75561 4.76409 4.81951 4.86135 4.93030 4.98044 5.02376 5.10135 5.13450 5.23356 5.23775 5.26231 5.34408 5.63173 5.81996 5.90678 5.98600 6.03276 6.39061 6.54446 6.68822 6.91401 7.09837 7.14690 7.39137 8.78213 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.029228 B = 0.001879 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.753137 B =14901.386483 C =15120.162104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 N -0.483 5.483 4 C 0.150 3.850 5 C 0.040 3.960 6 N -0.653 5.653 7 C 0.715 3.285 8 O -0.587 6.587 9 N -0.629 5.629 10 C 0.296 3.704 11 C -0.296 4.296 12 C 0.089 3.911 13 C -0.085 4.085 14 N -0.343 5.343 15 C 0.241 3.759 16 C -0.549 4.549 17 H 0.023 0.977 18 C 0.020 3.980 19 N -0.938 5.938 20 Si 0.951 3.049 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.233 1.233 24 N -0.354 5.354 25 C 0.003 3.997 26 C -0.255 4.255 27 C 0.503 3.497 28 O -0.598 6.598 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.214 0.786 35 H 0.429 0.571 36 H 0.425 0.575 37 H 0.167 0.833 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.273 0.727 44 H 0.131 0.869 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 -23.673 5.128 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.039 4.039 3 N -0.192 5.192 4 C 0.020 3.980 5 C -0.058 4.058 6 N -0.307 5.307 7 C 0.415 3.585 8 O -0.462 6.462 9 N -0.281 5.281 10 C 0.040 3.960 11 C -0.327 4.327 12 C -0.041 4.041 13 C -0.143 4.143 14 N -0.126 5.126 15 C 0.121 3.879 16 C -0.587 4.587 17 H 0.042 0.958 18 C -0.180 4.180 19 N -0.576 5.576 20 Si 0.772 3.228 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.156 1.156 24 N -0.184 5.184 25 C -0.020 4.020 26 C -0.277 4.277 27 C 0.307 3.693 28 O -0.485 6.485 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.269 0.731 36 H 0.264 0.736 37 H 0.184 0.816 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.149 0.851 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.116 -23.505 5.259 27.918 hybrid contribution -0.121 0.819 -0.156 0.843 sum -14.238 -22.685 5.102 27.265 Atomic orbital electron populations 1.22101 0.93194 1.04377 1.02377 1.22287 0.96581 0.78789 1.06228 1.45529 1.52419 1.15507 1.05788 1.22300 0.93894 0.90839 0.90972 1.16318 1.12108 0.92423 0.84932 1.41723 1.10655 1.60015 1.18339 1.15734 0.83744 0.78421 0.80611 1.90904 1.41491 1.63544 1.50294 1.41216 1.08712 1.54303 1.23850 1.18872 0.86888 0.96352 0.93870 1.21423 0.90621 1.15074 1.05568 1.21724 0.98870 0.95778 0.87751 1.20498 0.87515 1.04224 1.02055 1.48401 1.05266 1.40531 1.18369 1.19774 0.91622 0.88974 0.87499 1.21261 1.34119 0.90796 1.12531 0.95811 1.25842 0.96676 0.94332 1.01104 1.70037 1.44391 1.02311 1.40894 0.85676 0.78557 0.80172 0.78369 1.18998 1.20157 1.15603 1.77163 0.94855 1.23385 1.23040 1.21587 0.89087 0.99896 0.91433 1.21957 1.10869 0.94809 1.00114 1.17296 0.80361 0.88461 0.83206 1.90934 1.57482 1.68876 1.31207 0.88655 0.94462 0.90371 0.85000 0.89826 0.76931 0.73065 0.73641 0.81590 0.90538 0.87487 0.90437 0.90901 0.93235 0.91805 0.85062 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.24 71.98 0.74 -0.36 16 2 C 0.08 0.69 6.05 86.38 0.52 1.22 16 3 N -0.48 -6.74 2.59 -650.34 -1.68 -8.42 16 4 C 0.15 1.36 10.20 83.50 0.85 2.21 16 5 C 0.04 0.57 5.70 37.79 0.22 0.78 16 6 N -0.65 -8.33 5.30 -317.61 -1.68 -10.01 16 7 C 0.71 16.74 8.34 179.05 1.49 18.23 16 8 O -0.59 -18.58 12.87 -4.02 -0.05 -18.63 16 9 N -0.63 -16.00 5.45 -321.23 -1.75 -17.75 16 10 C 0.30 10.96 8.11 133.32 1.08 12.04 16 11 C -0.30 -11.36 9.52 22.11 0.21 -11.15 16 12 C 0.09 3.51 6.92 41.39 0.29 3.79 16 13 C -0.08 -2.65 10.11 71.24 0.72 -1.93 16 14 N -0.34 -15.38 3.59 -338.45 -1.22 -16.59 16 15 C 0.24 11.17 5.06 85.64 0.43 11.60 16 16 C -0.55 -30.96 9.94 25.60 0.25 -30.70 16 17 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 18 C 0.02 1.11 5.47 84.66 0.46 1.57 16 19 N -0.94 -56.53 13.96 21.45 0.30 -56.23 16 20 Si 0.95 40.07 27.47 68.60 1.88 41.95 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.23 -8.60 6.54 99.48 0.65 -7.95 16 24 N -0.35 -15.30 12.59 -54.44 -0.69 -15.98 16 25 C 0.00 0.06 9.05 22.41 0.20 0.27 16 26 C -0.26 -5.49 9.98 22.38 0.22 -5.27 16 27 C 0.50 11.52 7.40 84.82 0.63 12.15 16 28 O -0.60 -18.25 16.63 -5.66 -0.09 -18.35 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.13 0.11 8.02 -2.39 -0.02 0.10 16 33 H 0.08 1.10 7.38 -2.39 -0.02 1.08 16 34 H 0.21 -0.14 8.04 -2.91 -0.02 -0.16 16 35 H 0.43 1.87 8.84 -92.71 -0.82 1.05 16 36 H 0.43 7.69 8.84 -92.71 -0.82 6.87 16 37 H 0.17 6.25 5.91 -2.91 -0.02 6.23 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 40 H 0.08 2.30 7.07 -2.39 -0.02 2.28 16 41 H 0.07 3.02 6.09 -2.39 -0.01 3.00 16 42 H 0.05 2.24 7.57 -2.39 -0.02 2.22 16 43 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 44 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -86.70 384.27 2.70 -84.00 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -0.64 Total: 21.58 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 8.32 Total: 14.45 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -6.72 Total: -124.99 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.15 Total: -36.98 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.88 Total: 41.95 kcal Total: -86.70 2.70 -84.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271082052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.550 kcal (2) G-P(sol) polarization free energy of solvation -86.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds