Wall clock time and date at job start Wed Apr 1 2020 03:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36038 * 126.34435 * 2 1 4 4 C 1.50698 * 124.95409 * 0.02562 * 3 2 1 5 5 C 1.50694 * 109.47166 * 269.72202 * 4 3 2 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 3 8 8 N 1.40100 * 119.99901 * 179.72421 * 7 5 4 9 9 C 1.34774 * 119.99909 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00273 * 179.97438 * 9 8 7 11 11 N 1.34783 * 119.99881 * 0.02562 * 9 8 7 12 12 C 1.46496 * 119.99849 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47226 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47495 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99534 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00323 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99900 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99549 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46921 * 90.00563 * 18 16 14 20 20 H 1.48507 * 109.46923 * 209.99935 * 18 16 14 21 21 H 1.48496 * 109.47586 * 330.00225 * 18 16 14 22 22 N 1.30120 * 110.09583 * 179.73943 * 3 2 1 23 23 C 1.35785 * 109.64479 * 0.22595 * 22 3 2 24 24 C 1.39737 * 133.60574 * 179.97438 * 23 22 3 25 25 C 1.36609 * 119.88590 * 180.02562 * 24 23 22 26 26 C 1.38771 * 120.67194 * 359.97438 * 25 24 23 27 27 C 1.37851 * 120.44933 * 0.04440 * 26 25 24 28 28 C 1.38048 * 126.35244 * 180.12416 * 2 1 3 29 29 H 1.08998 * 109.47439 * 90.02562 * 1 2 3 30 30 H 1.09000 * 109.47017 * 210.02607 * 1 2 3 31 31 H 1.08993 * 109.47464 * 330.02206 * 1 2 3 32 32 H 1.08998 * 109.46890 * 149.72192 * 4 3 2 33 33 H 1.09002 * 109.46875 * 29.71994 * 4 3 2 34 34 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 35 35 H 0.97004 * 120.00056 * 0.02562 * 8 7 5 36 36 H 0.97000 * 119.99580 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.47247 * 299.99314 * 12 11 9 38 38 H 1.08997 * 109.47526 * 59.99406 * 12 11 9 39 39 H 1.09008 * 109.46910 * 299.99987 * 13 12 11 40 40 H 1.08997 * 109.47324 * 59.99317 * 13 12 11 41 41 H 0.96998 * 119.99342 * 180.02562 * 17 16 14 42 42 H 1.08001 * 120.05698 * 359.97438 * 24 23 22 43 43 H 1.08000 * 119.65802 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.77922 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.15663 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0957 0.0000 4 6 1.7880 2.5232 0.0006 5 6 1.6330 3.0015 -1.4200 6 8 1.8900 2.2569 -2.3422 7 7 1.2086 4.2570 -1.6658 8 7 1.0700 4.7036 -2.9864 9 6 0.6452 5.9588 -3.2322 10 8 0.5253 6.3467 -4.3783 11 7 0.3542 6.7846 -2.2075 12 6 -0.1070 8.1491 -2.4746 13 6 -0.3656 8.8687 -1.1494 14 6 -0.8394 10.2726 -1.4242 15 1 -0.9459 10.6170 -2.4423 16 6 -1.1380 11.1171 -0.3759 17 7 -1.5520 12.3421 -0.6158 18 14 -0.9558 10.5206 1.3849 19 1 0.4182 10.8125 1.8667 20 1 -1.9419 11.2186 2.2485 21 1 -1.1989 9.0567 1.4394 22 7 3.5204 0.7317 0.0056 23 6 3.6009 -0.6238 0.0045 24 6 4.6680 -1.5259 0.0081 25 6 4.4233 -2.8699 0.0051 26 6 3.1222 -3.3524 -0.0010 27 6 2.0539 -2.4811 -0.0051 28 6 2.2833 -1.1118 -0.0024 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 2.5123 3.1517 0.5186 33 1 0.8263 2.5810 0.5104 34 1 1.0034 4.8526 -0.9282 35 1 1.2791 4.1092 -3.7239 36 1 0.4502 6.4753 -1.2931 37 1 0.6560 8.6869 -3.0376 38 1 -1.0292 8.1140 -3.0546 39 1 -1.1287 8.3309 -0.5868 40 1 0.5564 8.9039 -0.5691 41 1 -1.7617 12.9362 0.1217 42 1 5.6846 -1.1612 0.0125 43 1 5.2508 -3.5638 0.0084 44 1 2.9452 -4.4178 -0.0029 45 1 1.0433 -2.8619 -0.0103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273105520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:51 Heat of formation + Delta-G solvation = 49.533520 kcal Electronic energy + Delta-G solvation = -28505.221419 eV Core-core repulsion = 24332.293709 eV Total energy + Delta-G solvation = -4172.927710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59883 -40.64193 -39.36591 -37.74533 -35.88225 -35.21255 -34.63697 -32.89691 -32.74758 -30.99817 -30.71450 -29.93184 -28.20121 -27.38158 -25.05581 -23.10946 -22.53546 -21.78061 -21.45809 -20.80203 -20.34484 -19.02905 -18.17840 -17.81269 -17.39630 -16.94495 -16.58326 -16.05227 -15.87978 -15.82951 -15.28203 -15.11098 -14.50512 -14.45192 -14.43665 -14.19418 -13.92321 -13.80625 -13.72544 -13.66946 -13.21103 -12.84354 -12.68870 -12.30127 -11.94470 -11.83013 -11.66364 -11.57413 -11.26745 -10.79660 -10.72239 -10.51468 -10.43066 -10.28254 -10.13229 -9.98464 -9.42081 -8.94573 -8.68917 -8.67200 -8.43563 -8.43293 -6.17728 -4.18602 0.54881 1.18002 1.51583 1.99289 2.16599 2.41228 3.10681 3.18286 3.18934 3.23841 3.27242 3.53051 3.54644 3.90989 4.01738 4.17803 4.30115 4.39311 4.58051 4.63892 4.65799 4.76715 4.80983 4.94129 5.03864 5.08854 5.14665 5.20084 5.39320 5.76092 5.81888 6.05052 6.10540 6.12221 6.16916 6.18838 6.44384 6.50555 6.52242 6.53662 6.68893 7.03734 7.04760 7.11853 7.46791 7.52024 7.58148 8.08801 8.36840 8.52299 8.86664 9.41503 10.95222 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.001863 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.728242 B =15027.572955 C =15854.536839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.484 5.484 3 C 0.301 3.699 4 C -0.057 4.057 5 C 0.519 3.481 6 O -0.521 6.521 7 N -0.524 5.524 8 N -0.537 5.537 9 C 0.709 3.291 10 O -0.570 6.570 11 N -0.738 5.738 12 C 0.144 3.856 13 C -0.021 4.021 14 C -0.525 4.525 15 H 0.077 0.923 16 C 0.070 3.930 17 N -0.896 5.896 18 Si 0.883 3.117 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.267 1.267 22 N -0.477 5.477 23 C 0.048 3.952 24 C -0.061 4.061 25 C -0.131 4.131 26 C -0.102 4.102 27 C -0.111 4.111 28 C 0.052 3.948 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.423 0.577 35 H 0.439 0.561 36 H 0.386 0.614 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.018 0.982 41 H 0.265 0.735 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -31.819 7.563 33.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.173 5.173 3 C 0.035 3.965 4 C -0.100 4.100 5 C 0.302 3.698 6 O -0.394 6.394 7 N -0.276 5.276 8 N -0.296 5.296 9 C 0.408 3.592 10 O -0.443 6.443 11 N -0.394 5.394 12 C 0.022 3.978 13 C -0.059 4.059 14 C -0.563 4.563 15 H 0.095 0.905 16 C -0.133 4.133 17 N -0.534 5.534 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.192 1.192 22 N -0.196 5.196 23 C -0.070 4.070 24 C -0.081 4.081 25 C -0.151 4.151 26 C -0.122 4.122 27 C -0.132 4.132 28 C -0.057 4.057 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.265 0.735 35 H 0.285 0.715 36 H 0.219 0.781 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.783 -31.162 6.206 32.490 hybrid contribution -0.734 -0.703 1.486 1.800 sum 6.049 -31.864 7.692 33.333 Atomic orbital electron populations 1.22039 0.76069 1.04669 1.03964 1.45000 1.07101 1.04943 1.60281 1.22320 0.85575 0.89094 0.99553 1.20023 1.05469 0.89690 0.94823 1.20331 0.77606 0.80404 0.91412 1.90816 1.48879 1.54123 1.45588 1.44762 1.69628 1.14004 0.99159 1.44734 1.74443 1.13549 0.96863 1.15843 0.78524 0.79092 0.85748 1.91032 1.60441 1.72920 1.19943 1.45590 1.71316 1.15518 1.06940 1.21515 0.99172 0.77044 1.00062 1.19805 0.96753 0.96943 0.92422 1.20885 1.45320 0.94515 0.95591 0.90518 1.25008 0.94398 0.94683 0.99191 1.69900 1.44977 1.06307 1.32221 0.86744 0.78198 0.79198 0.84826 1.20187 1.21268 1.19177 1.70355 1.16872 1.11130 1.21208 1.19019 0.92303 0.89971 1.05727 1.20053 0.97499 0.91563 0.98957 1.20650 0.97054 0.94802 1.02598 1.20886 0.91978 0.99249 1.00065 1.19941 0.99737 0.88709 1.04796 1.18852 0.91119 0.89282 1.06477 0.90340 0.89469 0.89306 0.84202 0.85996 0.73541 0.71504 0.78052 0.91633 0.91642 0.95992 0.96366 0.92477 0.85283 0.85315 0.85281 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 10.96 59.85 0.66 1.02 16 2 N -0.48 -4.35 3.21 -118.50 -0.38 -4.73 16 3 C 0.30 3.02 6.35 -154.82 -0.98 2.04 16 4 C -0.06 -0.35 5.99 -29.04 -0.17 -0.52 16 5 C 0.52 4.84 7.94 -10.98 -0.09 4.76 16 6 O -0.52 -7.19 15.87 5.56 0.09 -7.11 16 7 N -0.52 -4.54 6.26 31.22 0.20 -4.34 16 8 N -0.54 -6.60 6.26 27.64 0.17 -6.43 16 9 C 0.71 11.06 8.68 -86.91 -0.75 10.30 16 10 O -0.57 -11.37 17.18 5.29 0.09 -11.28 16 11 N -0.74 -10.80 5.52 -65.23 -0.36 -11.16 16 12 C 0.14 2.72 5.61 -4.04 -0.02 2.70 16 13 C -0.02 -0.45 4.16 -27.89 -0.12 -0.57 16 14 C -0.52 -14.01 9.66 -34.44 -0.33 -14.34 16 15 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -26.43 13.96 55.43 0.77 -25.66 16 18 Si 0.88 19.89 27.47 -169.99 -4.67 15.22 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -5.53 6.54 56.52 0.37 -5.16 16 22 N -0.48 -6.09 11.27 -8.23 -0.09 -6.18 16 23 C 0.05 0.58 7.23 -84.70 -0.61 -0.03 16 24 C -0.06 -0.60 10.05 -39.61 -0.40 -1.00 16 25 C -0.13 -0.97 9.96 -39.97 -0.40 -1.37 16 26 C -0.10 -0.71 10.03 -39.53 -0.40 -1.10 16 27 C -0.11 -0.89 10.05 -39.50 -0.40 -1.29 16 28 C 0.05 0.54 6.87 -83.99 -0.58 -0.04 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.21 6.99 -51.93 -0.36 -0.15 16 32 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.12 0.25 7.00 -51.93 -0.36 -0.11 16 34 H 0.42 2.43 6.70 -182.60 -1.22 1.21 16 35 H 0.44 5.62 8.10 -182.59 -1.48 4.14 16 36 H 0.39 4.27 6.39 -40.82 -0.26 4.01 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.44 7.20 -51.92 -0.37 0.07 16 40 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -38.64 385.96 -10.90 -49.54 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.85 Total: 3.95 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -4.69 Total: 2.36 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.31 Total: -58.50 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.67 Total: 15.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.64 -10.90 -49.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273105520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.078 kcal (2) G-P(sol) polarization free energy of solvation -38.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds