Wall clock time and date at job start Wed Apr 1 2020 03:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36038 * 126.34435 * 2 1 4 4 C 1.50698 * 124.95409 * 0.02562 * 3 2 1 5 5 C 1.50694 * 109.47166 * 269.72202 * 4 3 2 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 3 8 8 N 1.40100 * 119.99901 * 179.72421 * 7 5 4 9 9 C 1.34774 * 119.99909 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00273 * 179.97438 * 9 8 7 11 11 N 1.34783 * 119.99881 * 0.02562 * 9 8 7 12 12 C 1.46496 * 119.99849 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47226 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47495 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99534 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00323 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99900 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99549 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46921 * 90.00563 * 18 16 14 20 20 H 1.48507 * 109.46923 * 209.99935 * 18 16 14 21 21 H 1.48496 * 109.47586 * 330.00225 * 18 16 14 22 22 N 1.30120 * 110.09583 * 179.73943 * 3 2 1 23 23 C 1.35785 * 109.64479 * 0.22595 * 22 3 2 24 24 C 1.39737 * 133.60574 * 179.97438 * 23 22 3 25 25 C 1.36609 * 119.88590 * 180.02562 * 24 23 22 26 26 C 1.38771 * 120.67194 * 359.97438 * 25 24 23 27 27 C 1.37851 * 120.44933 * 0.04440 * 26 25 24 28 28 C 1.38048 * 126.35244 * 180.12416 * 2 1 3 29 29 H 1.08998 * 109.47439 * 90.02562 * 1 2 3 30 30 H 1.09000 * 109.47017 * 210.02607 * 1 2 3 31 31 H 1.08993 * 109.47464 * 330.02206 * 1 2 3 32 32 H 1.08998 * 109.46890 * 149.72192 * 4 3 2 33 33 H 1.09002 * 109.46875 * 29.71994 * 4 3 2 34 34 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 35 35 H 0.97004 * 120.00056 * 0.02562 * 8 7 5 36 36 H 0.97000 * 119.99580 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.47247 * 299.99314 * 12 11 9 38 38 H 1.08997 * 109.47526 * 59.99406 * 12 11 9 39 39 H 1.09008 * 109.46910 * 299.99987 * 13 12 11 40 40 H 1.08997 * 109.47324 * 59.99317 * 13 12 11 41 41 H 0.96998 * 119.99342 * 180.02562 * 17 16 14 42 42 H 1.08001 * 120.05698 * 359.97438 * 24 23 22 43 43 H 1.08000 * 119.65802 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.77922 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.15663 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0957 0.0000 4 6 1.7880 2.5232 0.0006 5 6 1.6330 3.0015 -1.4200 6 8 1.8900 2.2569 -2.3422 7 7 1.2086 4.2570 -1.6658 8 7 1.0700 4.7036 -2.9864 9 6 0.6452 5.9588 -3.2322 10 8 0.5253 6.3467 -4.3783 11 7 0.3542 6.7846 -2.2075 12 6 -0.1070 8.1491 -2.4746 13 6 -0.3656 8.8687 -1.1494 14 6 -0.8394 10.2726 -1.4242 15 1 -0.9459 10.6170 -2.4423 16 6 -1.1380 11.1171 -0.3759 17 7 -1.5520 12.3421 -0.6158 18 14 -0.9558 10.5206 1.3849 19 1 0.4182 10.8125 1.8667 20 1 -1.9419 11.2186 2.2485 21 1 -1.1989 9.0567 1.4394 22 7 3.5204 0.7317 0.0056 23 6 3.6009 -0.6238 0.0045 24 6 4.6680 -1.5259 0.0081 25 6 4.4233 -2.8699 0.0051 26 6 3.1222 -3.3524 -0.0010 27 6 2.0539 -2.4811 -0.0051 28 6 2.2833 -1.1118 -0.0024 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 2.5123 3.1517 0.5186 33 1 0.8263 2.5810 0.5104 34 1 1.0034 4.8526 -0.9282 35 1 1.2791 4.1092 -3.7239 36 1 0.4502 6.4753 -1.2931 37 1 0.6560 8.6869 -3.0376 38 1 -1.0292 8.1140 -3.0546 39 1 -1.1287 8.3309 -0.5868 40 1 0.5564 8.9039 -0.5691 41 1 -1.7617 12.9362 0.1217 42 1 5.6846 -1.1612 0.0125 43 1 5.2508 -3.5638 0.0084 44 1 2.9452 -4.4178 -0.0029 45 1 1.0433 -2.8619 -0.0103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273105520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:50 Heat of formation + Delta-G solvation = 19.586186 kcal Electronic energy + Delta-G solvation = -28506.520033 eV Core-core repulsion = 24332.293709 eV Total energy + Delta-G solvation = -4174.226324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.21544 -41.66603 -40.42237 -38.33488 -36.91555 -36.73809 -35.22009 -34.73178 -33.52189 -32.10739 -31.46055 -31.19136 -28.83945 -27.83133 -26.81423 -23.81933 -23.14822 -23.06937 -22.40411 -22.16057 -21.05855 -20.12447 -19.07742 -18.83771 -18.38630 -17.95174 -17.48044 -17.08187 -16.70170 -16.52137 -16.31324 -16.29190 -16.02695 -15.49097 -15.20419 -15.08416 -15.00981 -14.97538 -14.55618 -14.35427 -14.18964 -13.67753 -13.31140 -13.25788 -13.05550 -12.81002 -12.57450 -12.53192 -12.39961 -12.25404 -12.13442 -11.78535 -11.70595 -11.45006 -11.36235 -11.30662 -10.96998 -10.74511 -10.28306 -9.45737 -9.29531 -9.06073 -8.25091 -6.32993 -0.07306 0.55675 0.66752 1.25741 1.44072 1.47631 1.58285 1.61913 1.73302 1.95618 1.99027 2.42063 2.90326 2.97997 3.10524 3.25181 3.43956 3.84256 3.93318 4.02675 4.11756 4.16408 4.29853 4.32797 4.41810 4.47754 4.50198 4.51749 4.65419 4.70427 4.78849 4.87114 5.05112 5.21098 5.23056 5.36128 5.45477 5.45957 5.55740 5.57516 5.59016 5.66445 5.97218 6.10599 6.20347 6.26465 6.56368 6.75726 6.85481 7.14826 7.30650 7.33231 8.91640 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.001863 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.728242 B =15027.572955 C =15854.536839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.484 5.484 3 C 0.290 3.710 4 C -0.050 4.050 5 C 0.525 3.475 6 O -0.569 6.569 7 N -0.508 5.508 8 N -0.531 5.531 9 C 0.712 3.288 10 O -0.619 6.619 11 N -0.721 5.721 12 C 0.160 3.840 13 C -0.012 4.012 14 C -0.540 4.540 15 H 0.026 0.974 16 C 0.000 4.000 17 N -0.953 5.953 18 Si 0.961 3.039 19 H -0.267 1.267 20 H -0.293 1.293 21 H -0.225 1.225 22 N -0.522 5.522 23 C 0.008 3.992 24 C -0.089 4.089 25 C -0.126 4.126 26 C -0.102 4.102 27 C -0.117 4.117 28 C 0.031 3.969 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.440 0.560 35 H 0.439 0.561 36 H 0.408 0.592 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.266 0.734 42 H 0.128 0.872 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -34.774 10.781 36.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.173 5.173 3 C 0.023 3.977 4 C -0.092 4.092 5 C 0.311 3.689 6 O -0.445 6.445 7 N -0.263 5.263 8 N -0.286 5.286 9 C 0.411 3.589 10 O -0.496 6.496 11 N -0.379 5.379 12 C 0.036 3.964 13 C -0.050 4.050 14 C -0.578 4.578 15 H 0.045 0.955 16 C -0.197 4.197 17 N -0.593 5.593 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.147 1.147 22 N -0.242 5.242 23 C -0.110 4.110 24 C -0.108 4.108 25 C -0.146 4.146 26 C -0.121 4.121 27 C -0.138 4.138 28 C -0.078 4.078 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.182 0.818 33 H 0.189 0.811 34 H 0.285 0.715 35 H 0.284 0.716 36 H 0.246 0.754 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.173 0.827 44 H 0.179 0.821 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.343 -34.169 9.470 36.020 hybrid contribution -0.582 0.156 0.384 0.715 sum 5.761 -34.013 9.854 35.877 Atomic orbital electron populations 1.22365 0.73812 1.07067 1.04277 1.45249 1.08399 1.04253 1.59420 1.22946 0.85307 0.90734 0.98684 1.20264 1.08647 0.87676 0.92598 1.20951 0.76008 0.79668 0.92292 1.90815 1.50866 1.55429 1.47378 1.44784 1.69471 1.14314 0.97691 1.44422 1.73019 1.12284 0.98872 1.15785 0.78328 0.79775 0.84988 1.91005 1.62317 1.74292 1.21989 1.45074 1.70960 1.13820 1.08022 1.21025 0.97913 0.78789 0.98723 1.19668 0.97969 0.93728 0.93655 1.21261 1.45284 0.97679 0.93588 0.95517 1.26149 0.93788 0.94544 1.05176 1.70094 1.46939 1.08296 1.34011 0.85522 0.78265 0.80877 0.77068 1.19176 1.21902 1.14728 1.70280 1.18898 1.11911 1.23135 1.19487 0.93896 0.90334 1.07267 1.20292 0.97323 0.92611 1.00607 1.21015 0.98438 0.94244 1.00925 1.21332 0.91405 1.00792 0.98567 1.20332 1.01327 0.87948 1.04150 1.19228 0.90973 0.90561 1.07078 0.90960 0.87806 0.86359 0.81824 0.81087 0.71514 0.71613 0.75434 0.93648 0.93414 0.93719 0.94117 0.92484 0.85434 0.82742 0.82092 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 10.96 127.77 1.40 1.84 16 2 N -0.48 -7.92 3.21 -528.83 -1.70 -9.62 16 3 C 0.29 5.40 6.35 137.92 0.88 6.28 16 4 C -0.05 -0.44 5.99 29.10 0.17 -0.26 16 5 C 0.52 8.49 7.94 87.65 0.70 9.19 16 6 O -0.57 -15.25 15.87 -3.04 -0.05 -15.30 16 7 N -0.51 -7.21 6.26 -173.53 -1.09 -8.29 16 8 N -0.53 -12.16 6.26 -184.74 -1.16 -13.32 16 9 C 0.71 21.35 8.68 179.05 1.55 22.90 16 10 O -0.62 -24.92 17.18 -3.99 -0.07 -24.98 16 11 N -0.72 -19.37 5.52 -478.54 -2.64 -22.01 16 12 C 0.16 5.89 5.61 86.38 0.48 6.37 16 13 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 14 C -0.54 -29.14 9.66 25.60 0.25 -28.89 16 15 H 0.03 1.64 7.99 -2.91 -0.02 1.62 16 16 C 0.00 0.01 5.47 84.66 0.46 0.47 16 17 N -0.95 -57.79 13.96 21.45 0.30 -57.49 16 18 Si 0.96 39.16 27.47 68.60 1.88 41.04 16 19 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.22 -7.60 6.54 99.48 0.65 -6.95 16 22 N -0.52 -13.45 11.27 -179.96 -2.03 -15.47 16 23 C 0.01 0.21 7.23 39.45 0.29 0.49 16 24 C -0.09 -1.78 10.05 22.25 0.22 -1.56 16 25 C -0.13 -1.74 9.96 22.02 0.22 -1.52 16 26 C -0.10 -1.20 10.03 22.31 0.22 -0.97 16 27 C -0.12 -1.67 10.05 22.32 0.22 -1.45 16 28 C 0.03 0.62 6.87 38.86 0.27 0.89 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.12 0.05 6.99 -2.39 -0.02 0.03 16 32 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.17 -0.26 7.00 -2.39 -0.02 -0.27 16 34 H 0.44 3.01 6.70 -213.32 -1.43 1.58 16 35 H 0.44 10.93 8.10 -213.32 -1.73 9.20 16 36 H 0.41 7.24 6.39 -92.71 -0.59 6.65 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.60 7.20 -2.38 -0.02 1.58 16 40 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 44 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -91.46 385.96 -1.82 -93.28 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -2.74 Total: 18.75 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 7.46 Total: 13.42 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -8.31 Total: -126.20 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.12 Total: -40.29 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.88 Total: 41.04 kcal Total: -91.46 -1.82 -93.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273105520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.866 kcal (2) G-P(sol) polarization free energy of solvation -91.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds