Wall clock time and date at job start Wed Apr 1 2020 03:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47307 * 2 1 4 4 C 1.37099 * 119.99602 * 263.89115 * 3 2 1 5 5 H 1.08003 * 119.99534 * 190.51690 * 4 3 2 6 6 C 1.38951 * 120.00164 * 10.52756 * 4 3 2 7 7 N 1.31409 * 120.00160 * 19.67977 * 6 4 3 8 8 Si 1.86799 * 119.99651 * 199.68472 * 6 4 3 9 9 H 1.48497 * 109.47109 * 89.99831 * 8 6 4 10 10 H 1.48502 * 109.47058 * 209.99556 * 8 6 4 11 11 H 1.48494 * 109.47376 * 329.99523 * 8 6 4 12 12 C 1.34772 * 120.00056 * 83.89602 * 3 2 1 13 13 O 1.21298 * 120.00215 * 5.70820 * 12 3 2 14 14 C 1.50703 * 119.99935 * 185.70720 * 12 3 2 15 15 C 1.53117 * 109.52224 * 162.70280 * 14 12 3 16 16 C 1.53033 * 109.27937 * 177.56016 * 15 14 12 17 17 N 1.46853 * 109.52371 * 300.82500 * 16 15 14 18 18 C 1.39336 * 110.99983 * 185.83823 * 17 16 15 19 19 C 1.39098 * 119.92872 * 299.99647 * 18 17 16 20 20 C 1.37696 * 120.09952 * 179.72267 * 19 18 17 21 21 C 1.39788 * 119.96340 * 0.25586 * 20 19 18 22 22 C 1.43202 * 120.06967 * 180.02562 * 21 20 19 23 23 N 9.45346 * 167.75073 * 150.98288 * 14 1 2 24 24 C 1.39815 * 119.86222 * 359.97438 * 21 20 19 25 25 C 1.37837 * 119.89566 * 359.97438 * 24 21 20 26 26 F 1.35097 * 119.97869 * 179.97438 * 25 24 21 27 27 C 1.46841 * 111.19815 * 61.74003 * 17 16 15 28 28 C 1.53044 * 109.52316 * 298.25607 * 27 17 16 29 29 H 1.08994 * 109.47323 * 173.27391 * 1 2 3 30 30 H 1.09005 * 109.46578 * 293.26836 * 1 2 3 31 31 H 1.08999 * 109.47234 * 53.26574 * 1 2 3 32 32 H 1.09001 * 109.46932 * 239.99715 * 2 1 3 33 33 H 1.09000 * 109.47314 * 119.99908 * 2 1 3 34 34 H 0.96998 * 120.00038 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.57207 * 42.54477 * 14 12 3 36 36 H 1.09000 * 109.50061 * 57.62065 * 15 14 12 37 37 H 1.09000 * 109.50784 * 297.50536 * 15 14 12 38 38 H 1.09000 * 109.46375 * 180.80873 * 16 15 14 39 39 H 1.09000 * 109.46121 * 60.83655 * 16 15 14 40 40 H 1.08000 * 119.94979 * 0.02562 * 19 18 17 41 41 H 1.08001 * 120.01724 * 180.23249 * 20 19 18 42 42 H 1.07997 * 120.05251 * 179.97438 * 24 21 20 43 43 H 1.08999 * 109.46797 * 58.27537 * 27 17 16 44 44 H 1.09000 * 109.46036 * 178.24747 * 27 17 16 45 45 H 1.08996 * 109.50476 * 299.24077 * 28 27 17 46 46 H 1.08997 * 109.49870 * 179.11897 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3660 1.9853 -1.1806 5 1 2.8823 2.9339 -1.1703 6 6 2.0538 1.3773 -2.3904 7 7 1.1170 0.4573 -2.4410 8 14 2.9661 1.8679 -3.9450 9 1 4.1661 1.0083 -4.1068 10 1 2.0724 1.6962 -5.1184 11 1 3.3850 3.2891 -3.8455 12 6 2.1260 2.0579 1.1605 13 8 1.9182 1.4929 2.2136 14 6 2.5045 3.5166 1.1499 15 6 2.1456 4.1482 2.4978 16 6 2.5875 5.6133 2.5029 17 7 4.0365 5.6897 2.2766 18 6 4.4936 6.9996 2.4054 19 6 3.9928 7.9946 1.5723 20 6 4.4379 9.2913 1.7004 21 6 5.3984 9.6076 2.6655 22 6 5.8625 10.9556 2.8011 23 7 6.2308 12.0249 2.9085 24 6 5.9042 8.6054 3.4989 25 6 5.4539 7.3095 3.3664 26 9 5.9419 6.3397 4.1704 27 6 4.3995 5.1320 0.9676 28 6 4.0117 3.6524 0.9167 29 1 -0.3634 -1.0205 -0.1204 30 1 -0.3633 0.4060 0.9441 31 1 -0.3633 0.6146 -0.8236 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.8993 0.0326 -3.2855 35 1 1.9650 4.0281 0.3528 36 1 2.6551 3.6117 3.2982 37 1 1.0678 4.0926 2.6503 38 1 2.3463 6.0621 3.4665 39 1 2.0674 6.1523 1.7110 40 1 3.2502 7.7506 0.8271 41 1 4.0454 10.0635 1.0553 42 1 6.6467 8.8463 4.2453 43 1 3.8709 5.6732 0.1829 44 1 5.4744 5.2311 0.8161 45 1 4.5505 3.1081 1.6922 46 1 4.2671 3.2428 -0.0606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285078868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:15 Heat of formation + Delta-G solvation = -4.851948 kcal Electronic energy + Delta-G solvation = -30176.004041 eV Core-core repulsion = 25980.798038 eV Total energy + Delta-G solvation = -4195.206003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -48.96674 -40.48313 -39.12041 -37.89585 -36.53699 -35.08657 -33.57881 -31.56135 -31.18895 -30.75439 -30.20870 -29.26496 -25.61031 -24.78483 -23.42651 -22.96354 -22.87530 -21.68695 -19.83458 -19.43825 -18.90186 -17.49395 -16.91112 -16.78077 -16.29879 -16.10801 -15.86271 -14.79744 -14.75925 -14.52587 -14.46935 -14.34278 -14.25195 -13.95019 -13.74379 -13.62732 -13.23064 -13.13400 -12.90464 -12.66099 -12.37954 -12.32457 -12.27682 -12.02885 -11.91672 -11.63473 -11.32275 -11.14187 -11.01970 -10.91058 -10.69331 -10.48548 -10.26703 -10.15579 -10.01549 -9.73616 -9.43210 -8.97798 -8.92745 -8.62614 -8.28351 -7.79563 -6.40405 -3.91760 0.16747 0.73719 2.23436 2.41716 3.04609 3.15206 3.16661 3.29476 3.31712 3.55479 3.86947 4.01333 4.02593 4.34857 4.51111 4.68888 4.76397 4.89417 4.97833 5.13252 5.18006 5.26086 5.39452 5.41530 5.55953 5.59129 5.68876 5.72755 5.77818 5.85785 5.95999 6.03313 6.19779 6.23464 6.35054 6.44335 6.62132 6.65444 6.78147 6.83650 6.86948 6.93303 7.04560 7.04899 7.15891 7.30822 7.43159 7.72072 7.76331 8.40829 9.03682 9.54177 9.94671 10.57151 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.002721 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.553303 B =10288.815972 C =11375.114472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.133 3.867 3 N -0.440 5.440 4 C -0.333 4.333 5 H 0.103 0.897 6 C 0.034 3.966 7 N -0.858 5.858 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.271 1.271 12 C 0.458 3.542 13 O -0.610 6.610 14 C -0.089 4.089 15 C -0.094 4.094 16 C 0.063 3.937 17 N -0.506 5.506 18 C 0.098 3.902 19 C -0.124 4.124 20 C -0.070 4.070 21 C -0.011 4.011 22 C 0.258 3.742 23 N -0.413 5.413 24 C -0.105 4.105 25 C 0.124 3.876 26 F -0.118 7.118 27 C 0.065 3.935 28 C -0.107 4.107 29 H 0.034 0.966 30 H 0.022 0.978 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 13.229 4.580 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.461 4.461 5 H 0.120 0.880 6 C -0.171 4.171 7 N -0.497 5.497 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.247 3.753 13 O -0.497 6.497 14 C -0.110 4.110 15 C -0.132 4.132 16 C -0.062 4.062 17 N -0.228 5.228 18 C 0.001 3.999 19 C -0.144 4.144 20 C -0.091 4.091 21 C -0.014 4.014 22 C -0.058 4.058 23 N -0.088 5.088 24 C -0.126 4.126 25 C 0.104 3.896 26 F -0.096 7.096 27 C -0.061 4.061 28 C -0.146 4.146 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.870 14.092 5.453 16.211 hybrid contribution -0.112 0.063 -1.527 1.532 sum 5.757 14.155 3.927 15.778 Atomic orbital electron populations 1.21903 0.96983 1.00119 1.00301 1.21223 0.94204 0.83336 1.00275 1.43835 1.55159 1.11378 1.05373 1.19766 1.36322 1.07160 0.82819 0.87973 1.25219 0.95613 0.97024 0.99198 1.70159 1.26102 1.26700 1.26705 0.86104 0.79493 0.79023 0.81100 1.20317 1.21041 1.19521 1.19929 0.83358 0.88187 0.83868 1.90519 1.57702 1.70260 1.31230 1.21041 0.96645 0.95420 0.97937 1.21381 1.01068 0.92615 0.98167 1.22258 0.84419 0.98710 1.00838 1.59472 1.15939 1.14053 1.33316 1.19168 0.95323 0.90850 0.94556 1.21640 1.00752 0.92363 0.99652 1.21093 0.94740 0.96972 0.96290 1.15695 1.00207 0.85674 0.99847 1.25527 0.93732 0.92615 0.93896 1.81284 1.08304 1.11485 1.07731 1.21038 1.01014 0.90419 1.00175 1.17296 0.95684 0.85177 0.91475 1.91567 1.85904 1.61506 1.70618 1.22243 1.00700 0.96371 0.86750 1.21610 0.95268 0.93990 1.03683 0.94685 0.95878 0.90082 0.88498 0.94712 0.92197 0.89841 0.90131 0.91228 0.90604 0.94099 0.83876 0.84314 0.83507 0.93835 0.90544 0.90987 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.53 37.16 0.35 -2.73 16 2 C 0.13 3.19 5.29 -4.04 -0.02 3.17 16 3 N -0.44 -10.56 2.64 -114.81 -0.30 -10.86 16 4 C -0.33 -7.74 8.61 -14.93 -0.13 -7.87 16 5 H 0.10 2.19 4.91 -52.48 -0.26 1.93 16 6 C 0.03 0.79 5.02 -17.47 -0.09 0.70 16 7 N -0.86 -20.76 8.43 55.50 0.47 -20.29 16 8 Si 0.92 18.14 29.60 -169.99 -5.03 13.11 16 9 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 12 C 0.46 10.52 6.80 -10.99 -0.07 10.44 16 13 O -0.61 -15.69 15.62 5.54 0.09 -15.61 16 14 C -0.09 -1.59 1.73 -91.65 -0.16 -1.75 16 15 C -0.09 -1.49 4.86 -26.65 -0.13 -1.62 16 16 C 0.06 0.77 5.11 -3.83 -0.02 0.75 16 17 N -0.51 -6.17 4.44 -171.06 -0.76 -6.93 16 18 C 0.10 0.98 4.68 -83.72 -0.39 0.59 16 19 C -0.12 -0.97 8.66 -39.46 -0.34 -1.31 16 20 C -0.07 -0.46 9.74 -39.20 -0.38 -0.84 16 21 C -0.01 -0.08 5.74 -106.80 -0.61 -0.69 16 22 C 0.26 2.30 15.33 -22.47 -0.34 1.95 16 23 N -0.41 -4.65 18.54 41.84 0.78 -3.87 16 24 C -0.10 -0.80 9.72 -39.14 -0.38 -1.18 16 25 C 0.12 1.23 7.30 -39.32 -0.29 0.94 16 26 F -0.12 -1.41 17.07 2.25 0.04 -1.37 16 27 C 0.06 0.81 5.16 -3.83 -0.02 0.79 16 28 C -0.11 -1.70 5.07 -26.65 -0.14 -1.84 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.98 6.58 -51.93 -0.34 1.64 16 32 H 0.10 2.41 5.82 -51.93 -0.30 2.11 16 33 H 0.03 0.84 7.54 -51.93 -0.39 0.45 16 34 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 35 H 0.08 1.49 7.36 -51.93 -0.38 1.11 16 36 H 0.08 1.43 7.84 -51.93 -0.41 1.03 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 39 H 0.04 0.45 7.31 -51.93 -0.38 0.07 16 40 H 0.14 1.00 7.10 -52.49 -0.37 0.62 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.04 0.50 7.53 -51.93 -0.39 0.11 16 44 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.09 1.48 6.12 -51.93 -0.32 1.16 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -28.12 377.29 -8.26 -36.38 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.06 Total: 4.26 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.16 Total: -0.50 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.18 Total: -41.96 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.09 Total: -15.61 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.12 -8.26 -36.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285078868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.529 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds