Wall clock time and date at job start Wed Apr 1 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47307 * 2 1 4 4 C 1.37099 * 119.99602 * 263.89115 * 3 2 1 5 5 H 1.08003 * 119.99534 * 190.51690 * 4 3 2 6 6 C 1.38951 * 120.00164 * 10.52756 * 4 3 2 7 7 N 1.31409 * 120.00160 * 19.67977 * 6 4 3 8 8 Si 1.86799 * 119.99651 * 199.68472 * 6 4 3 9 9 H 1.48497 * 109.47109 * 89.99831 * 8 6 4 10 10 H 1.48502 * 109.47058 * 209.99556 * 8 6 4 11 11 H 1.48494 * 109.47376 * 329.99523 * 8 6 4 12 12 C 1.34772 * 120.00056 * 83.89602 * 3 2 1 13 13 O 1.21298 * 120.00215 * 5.70820 * 12 3 2 14 14 C 1.50703 * 119.99935 * 185.70720 * 12 3 2 15 15 C 1.53117 * 109.52224 * 162.70280 * 14 12 3 16 16 C 1.53033 * 109.27937 * 177.56016 * 15 14 12 17 17 N 1.46853 * 109.52371 * 300.82500 * 16 15 14 18 18 C 1.39336 * 110.99983 * 185.83823 * 17 16 15 19 19 C 1.39098 * 119.92872 * 299.99647 * 18 17 16 20 20 C 1.37696 * 120.09952 * 179.72267 * 19 18 17 21 21 C 1.39788 * 119.96340 * 0.25586 * 20 19 18 22 22 C 1.43202 * 120.06967 * 180.02562 * 21 20 19 23 23 N 9.45346 * 167.75073 * 150.98288 * 14 1 2 24 24 C 1.39815 * 119.86222 * 359.97438 * 21 20 19 25 25 C 1.37837 * 119.89566 * 359.97438 * 24 21 20 26 26 F 1.35097 * 119.97869 * 179.97438 * 25 24 21 27 27 C 1.46841 * 111.19815 * 61.74003 * 17 16 15 28 28 C 1.53044 * 109.52316 * 298.25607 * 27 17 16 29 29 H 1.08994 * 109.47323 * 173.27391 * 1 2 3 30 30 H 1.09005 * 109.46578 * 293.26836 * 1 2 3 31 31 H 1.08999 * 109.47234 * 53.26574 * 1 2 3 32 32 H 1.09001 * 109.46932 * 239.99715 * 2 1 3 33 33 H 1.09000 * 109.47314 * 119.99908 * 2 1 3 34 34 H 0.96998 * 120.00038 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.57207 * 42.54477 * 14 12 3 36 36 H 1.09000 * 109.50061 * 57.62065 * 15 14 12 37 37 H 1.09000 * 109.50784 * 297.50536 * 15 14 12 38 38 H 1.09000 * 109.46375 * 180.80873 * 16 15 14 39 39 H 1.09000 * 109.46121 * 60.83655 * 16 15 14 40 40 H 1.08000 * 119.94979 * 0.02562 * 19 18 17 41 41 H 1.08001 * 120.01724 * 180.23249 * 20 19 18 42 42 H 1.07997 * 120.05251 * 179.97438 * 24 21 20 43 43 H 1.08999 * 109.46797 * 58.27537 * 27 17 16 44 44 H 1.09000 * 109.46036 * 178.24747 * 27 17 16 45 45 H 1.08996 * 109.50476 * 299.24077 * 28 27 17 46 46 H 1.08997 * 109.49870 * 179.11897 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3660 1.9853 -1.1806 5 1 2.8823 2.9339 -1.1703 6 6 2.0538 1.3773 -2.3904 7 7 1.1170 0.4573 -2.4410 8 14 2.9661 1.8679 -3.9450 9 1 4.1661 1.0083 -4.1068 10 1 2.0724 1.6962 -5.1184 11 1 3.3850 3.2891 -3.8455 12 6 2.1260 2.0579 1.1605 13 8 1.9182 1.4929 2.2136 14 6 2.5045 3.5166 1.1499 15 6 2.1456 4.1482 2.4978 16 6 2.5875 5.6133 2.5029 17 7 4.0365 5.6897 2.2766 18 6 4.4936 6.9996 2.4054 19 6 3.9928 7.9946 1.5723 20 6 4.4379 9.2913 1.7004 21 6 5.3984 9.6076 2.6655 22 6 5.8625 10.9556 2.8011 23 7 6.2308 12.0249 2.9085 24 6 5.9042 8.6054 3.4989 25 6 5.4539 7.3095 3.3664 26 9 5.9419 6.3397 4.1704 27 6 4.3995 5.1320 0.9676 28 6 4.0117 3.6524 0.9167 29 1 -0.3634 -1.0205 -0.1204 30 1 -0.3633 0.4060 0.9441 31 1 -0.3633 0.6146 -0.8236 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.8993 0.0326 -3.2855 35 1 1.9650 4.0281 0.3528 36 1 2.6551 3.6117 3.2982 37 1 1.0678 4.0926 2.6503 38 1 2.3463 6.0621 3.4665 39 1 2.0674 6.1523 1.7110 40 1 3.2502 7.7506 0.8271 41 1 4.0454 10.0635 1.0553 42 1 6.6467 8.8463 4.2453 43 1 3.8709 5.6732 0.1829 44 1 5.4744 5.2311 0.8161 45 1 4.5505 3.1081 1.6922 46 1 4.2671 3.2428 -0.0606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285078868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:14 Heat of formation + Delta-G solvation = -18.476806 kcal Electronic energy + Delta-G solvation = -30176.594859 eV Core-core repulsion = 25980.798038 eV Total energy + Delta-G solvation = -4195.796821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.75341 -41.43763 -40.49413 -38.99760 -37.40196 -36.88082 -34.76783 -33.38558 -32.01965 -31.79842 -31.52582 -30.48795 -26.94019 -26.37683 -24.47432 -24.05071 -23.71110 -23.13754 -21.14799 -20.57385 -20.15400 -18.81135 -18.04207 -17.84789 -17.60835 -16.99547 -16.67741 -16.22537 -16.08864 -15.87813 -15.73137 -15.17804 -15.11203 -14.98200 -14.94784 -14.57882 -14.51183 -14.41843 -14.17216 -14.05290 -13.59399 -13.55208 -13.22023 -13.15967 -13.08815 -12.83046 -12.73961 -12.64460 -12.52740 -12.32147 -12.17750 -12.01117 -11.85355 -11.61464 -11.52352 -11.32935 -10.78028 -10.11325 -10.03875 -9.67413 -9.67188 -9.47849 -8.18967 -5.76303 -0.48008 0.14644 1.47418 1.54401 1.55282 1.63830 1.74369 2.10673 2.35220 2.57579 2.68857 2.75241 3.05085 3.21612 3.36624 3.76943 3.86657 3.96924 4.01203 4.06552 4.17519 4.29894 4.37483 4.46057 4.48566 4.60956 4.61895 4.69627 4.77661 4.85047 4.90873 4.94164 4.97430 4.99535 5.01372 5.06971 5.14738 5.16703 5.24340 5.31751 5.46359 5.51679 5.56590 5.59435 5.81367 5.92320 5.94611 6.31904 6.38528 6.56978 7.21961 7.71479 8.12444 8.79599 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.002721 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.553303 B =10288.815972 C =11375.114472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.132 3.868 3 N -0.452 5.452 4 C -0.348 4.348 5 H 0.120 0.880 6 C -0.007 4.007 7 N -0.884 5.884 8 Si 0.982 3.018 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.252 1.252 12 C 0.443 3.557 13 O -0.647 6.647 14 C -0.080 4.080 15 C -0.088 4.088 16 C 0.074 3.926 17 N -0.522 5.522 18 C 0.086 3.914 19 C -0.118 4.118 20 C -0.051 4.051 21 C -0.008 4.008 22 C 0.283 3.717 23 N -0.455 5.455 24 C -0.092 4.092 25 C 0.105 3.895 26 F -0.137 7.137 27 C 0.074 3.926 28 C -0.100 4.100 29 H 0.052 0.948 30 H 0.013 0.987 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.050 0.950 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 16.011 3.157 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.009 3.991 3 N -0.168 5.168 4 C -0.475 4.475 5 H 0.138 0.862 6 C -0.209 4.209 7 N -0.522 5.522 8 Si 0.807 3.193 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.175 1.175 12 C 0.233 3.767 13 O -0.537 6.537 14 C -0.101 4.101 15 C -0.127 4.127 16 C -0.052 4.052 17 N -0.244 5.244 18 C -0.010 4.010 19 C -0.137 4.137 20 C -0.072 4.072 21 C -0.012 4.012 22 C -0.032 4.032 23 N -0.131 5.131 24 C -0.114 4.114 25 C 0.084 3.916 26 F -0.115 7.115 27 C -0.052 4.052 28 C -0.138 4.138 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.177 0.823 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.391 16.897 4.032 18.510 hybrid contribution -0.300 -0.876 -1.047 1.397 sum 6.091 16.021 2.985 17.398 Atomic orbital electron populations 1.21720 0.96096 1.00850 0.98966 1.21154 0.94905 0.83999 0.99052 1.44093 1.55177 1.11327 1.06246 1.20189 1.36680 1.08017 0.82598 0.86213 1.26042 0.95925 0.97022 1.01882 1.70253 1.27005 1.27589 1.27392 0.85072 0.77687 0.79541 0.77005 1.20761 1.21577 1.17521 1.20879 0.82593 0.90220 0.82986 1.90481 1.59197 1.71606 1.32412 1.21011 0.98108 0.91704 0.99277 1.21287 1.00380 0.95046 0.95941 1.22138 0.84899 0.95756 1.02419 1.59275 1.15822 1.15995 1.33287 1.19184 0.96038 0.90200 0.95596 1.21726 1.00700 0.92036 0.99276 1.21339 0.93291 0.97102 0.95470 1.15685 1.00555 0.84711 1.00223 1.25581 0.92569 0.92418 0.92615 1.81324 1.09738 1.12834 1.09177 1.21104 1.00679 0.89526 1.00105 1.17488 0.96592 0.85525 0.91956 1.91520 1.86322 1.62375 1.71312 1.22134 1.01640 0.93717 0.87701 1.21497 0.93301 0.96724 1.02298 0.92869 0.96804 0.91559 0.89373 0.96001 0.92214 0.89241 0.92896 0.91966 0.89413 0.91840 0.82304 0.81663 0.82160 0.91815 0.89392 0.93164 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 9.53 71.98 0.69 -4.82 16 2 C 0.13 6.56 5.29 86.38 0.46 7.01 16 3 N -0.45 -22.10 2.64 -635.52 -1.68 -23.77 16 4 C -0.35 -16.05 8.61 84.04 0.72 -15.32 16 5 H 0.12 4.96 4.91 -2.91 -0.01 4.95 16 6 C -0.01 -0.31 5.02 84.93 0.43 0.12 16 7 N -0.88 -42.85 8.43 21.66 0.18 -42.67 16 8 Si 0.98 36.16 29.60 68.60 2.03 38.19 16 9 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.29 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 12 C 0.44 20.88 6.80 87.66 0.60 21.48 16 13 O -0.65 -34.72 15.62 -3.08 -0.05 -34.77 16 14 C -0.08 -2.84 1.73 -11.46 -0.02 -2.86 16 15 C -0.09 -2.79 4.86 30.64 0.15 -2.64 16 16 C 0.07 1.63 5.11 86.32 0.44 2.07 16 17 N -0.52 -11.64 4.44 -695.12 -3.09 -14.73 16 18 C 0.09 1.48 4.68 38.42 0.18 1.66 16 19 C -0.12 -1.33 8.66 22.35 0.19 -1.14 16 20 C -0.05 -0.44 9.74 22.52 0.22 -0.23 16 21 C -0.01 -0.09 5.74 -21.28 -0.12 -0.22 16 22 C 0.28 4.28 15.33 88.33 1.35 5.63 16 23 N -0.46 -9.41 18.54 19.00 0.35 -9.06 16 24 C -0.09 -1.18 9.72 22.56 0.22 -0.96 16 25 C 0.10 1.86 7.30 22.44 0.16 2.02 16 26 F -0.14 -3.18 17.07 44.97 0.77 -2.42 16 27 C 0.07 1.66 5.16 86.33 0.45 2.10 16 28 C -0.10 -3.11 5.07 30.65 0.16 -2.95 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 3.29 6.58 -2.39 -0.02 3.27 16 32 H 0.09 4.50 5.82 -2.39 -0.01 4.49 16 33 H 0.02 1.11 7.54 -2.39 -0.02 1.09 16 34 H 0.27 12.40 8.31 -92.71 -0.77 11.63 16 35 H 0.09 3.08 7.36 -2.39 -0.02 3.06 16 36 H 0.05 1.95 7.84 -2.39 -0.02 1.93 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 1.77 8.11 -2.39 -0.02 1.75 16 39 H 0.06 1.15 7.31 -2.39 -0.02 1.13 16 40 H 0.16 1.36 7.10 -2.91 -0.02 1.34 16 41 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.06 1.20 7.53 -2.39 -0.02 1.18 16 44 H 0.09 1.80 8.11 -2.39 -0.02 1.78 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.08 2.61 6.12 -2.39 -0.01 2.60 16 Total: -1.00 -62.89 377.29 5.81 -57.08 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.02 Total: 21.18 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.27 Total: 10.97 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -4.23 Total: -90.23 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.05 Total: -34.77 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.77 Total: -2.42 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -62.89 5.81 -57.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285078868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.602 kcal (2) G-P(sol) polarization free energy of solvation -62.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds