Wall clock time and date at job start Wed Apr 1 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47386 * 2 1 4 4 C 1.46504 * 119.99749 * 265.54282 * 3 2 1 5 5 C 1.50701 * 109.47088 * 273.46030 * 4 3 2 6 6 H 1.07997 * 119.99671 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99782 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99753 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00203 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46886 * 90.00472 * 9 7 5 11 11 H 1.48497 * 109.47186 * 210.00368 * 9 7 5 12 12 H 1.48501 * 109.47290 * 330.00580 * 9 7 5 13 13 C 1.34777 * 120.00430 * 85.53738 * 3 2 1 14 14 O 1.21277 * 119.99906 * 4.01629 * 13 3 2 15 15 C 1.50703 * 120.00134 * 184.01281 * 13 3 2 16 16 H 1.08999 * 110.27095 * 326.45191 * 15 13 3 17 17 C 1.54593 * 110.30994 * 88.65229 * 15 13 3 18 18 C 1.54934 * 102.92376 * 140.87438 * 17 15 13 19 19 N 1.48542 * 103.22270 * 322.58263 * 18 17 15 20 20 C 1.39343 * 110.99515 * 159.72354 * 19 18 17 21 21 C 1.39098 * 119.93278 * 8.41164 * 20 19 18 22 22 C 1.37693 * 120.10160 * 179.72558 * 21 20 19 23 23 C 1.39784 * 119.96267 * 0.02562 * 22 21 20 24 24 C 1.43202 * 120.07105 * 179.97438 * 23 22 21 25 25 N 9.89670 * 160.40439 * 199.91567 * 13 1 2 26 26 C 1.39816 * 119.86609 * 0.02562 * 23 22 21 27 27 C 1.37843 * 119.89129 * 359.97438 * 26 23 22 28 28 F 1.35094 * 119.97790 * 179.97438 * 27 26 23 29 29 C 1.47896 * 105.81890 * 39.21133 * 19 18 17 30 30 H 1.08999 * 109.46954 * 300.00727 * 1 2 3 31 31 H 1.08999 * 109.46534 * 60.00452 * 1 2 3 32 32 H 1.08997 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47603 * 239.99651 * 2 1 3 34 34 H 1.09001 * 109.47022 * 119.99723 * 2 1 3 35 35 H 1.09002 * 109.47374 * 33.46492 * 4 3 2 36 36 H 1.09004 * 109.47154 * 153.46055 * 4 3 2 37 37 H 0.96999 * 119.99440 * 179.97438 * 8 7 5 38 38 H 1.08998 * 110.72057 * 259.23273 * 17 15 13 39 39 H 1.08998 * 110.72297 * 22.33200 * 17 15 13 40 40 H 1.08996 * 110.66562 * 204.15317 * 18 17 15 41 41 H 1.08993 * 110.66871 * 81.01251 * 18 17 15 42 42 H 1.07998 * 119.94655 * 359.70231 * 21 20 19 43 43 H 1.08004 * 120.01864 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.05724 * 179.97438 * 26 23 22 45 45 H 1.09003 * 109.91977 * 94.02256 * 29 19 18 46 46 H 1.09006 * 109.91557 * 215.11235 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3555 2.0389 -1.2650 5 6 3.7826 1.7219 -1.6312 6 1 4.3786 1.0930 -0.9864 7 6 4.3272 2.2346 -2.7894 8 7 5.5725 1.9576 -3.1093 9 14 3.2960 3.3217 -3.9049 10 1 3.4542 4.7408 -3.4970 11 1 3.7466 3.1575 -5.3103 12 1 1.8676 2.9311 -3.7942 13 6 2.1575 2.0469 1.1636 14 8 1.9483 1.4801 2.2152 15 6 2.5730 3.4955 1.1580 16 1 3.2539 3.6898 0.3294 17 6 1.3303 4.4098 1.0600 18 6 1.6850 5.5798 2.0117 19 7 2.3997 4.9064 3.1263 20 6 3.1803 5.8140 3.8394 21 6 3.0749 7.1761 3.5776 22 6 3.8404 8.0764 4.2841 23 6 4.7255 7.6213 5.2657 24 6 5.5232 8.5555 6.0015 25 7 6.1555 9.2968 6.5857 26 6 4.8311 6.2518 5.5269 27 6 4.0619 5.3555 4.8162 28 9 4.1630 4.0319 5.0668 29 6 3.2399 3.8653 2.4959 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6904 1.6792 -2.0501 36 1 2.2393 3.1172 -1.1561 37 1 5.9554 2.3181 -3.9243 38 1 1.1957 4.7695 0.0400 39 1 0.4382 3.8862 1.4037 40 1 0.7807 6.0685 2.3742 41 1 2.3378 6.2965 1.5136 42 1 2.3917 7.5279 2.8187 43 1 3.7578 9.1337 4.0795 44 1 5.5142 5.8967 6.2843 45 1 4.2418 4.2552 2.3161 46 1 3.2932 2.9893 3.1424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285894177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:32 Heat of formation + Delta-G solvation = -7.184242 kcal Electronic energy + Delta-G solvation = -30209.704331 eV Core-core repulsion = 26014.397192 eV Total energy + Delta-G solvation = -4195.307139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.95979 -40.72819 -39.44919 -38.00310 -36.42628 -35.36014 -33.22411 -32.71189 -31.26389 -30.81258 -29.21447 -29.03272 -27.66339 -24.50999 -23.82758 -22.83959 -22.65138 -21.47866 -20.88054 -19.41958 -18.24932 -17.57340 -17.09790 -16.96373 -16.68693 -16.19031 -15.83256 -15.68293 -15.05461 -14.66002 -14.58656 -14.37649 -14.12699 -14.02640 -13.79191 -13.70150 -13.40423 -13.09673 -13.01364 -12.92539 -12.60782 -12.48266 -12.39688 -12.10051 -11.98662 -11.89216 -11.68908 -11.57922 -11.40800 -11.21587 -11.04135 -10.81833 -10.75217 -10.46000 -10.35336 -9.95333 -9.70447 -9.27604 -9.14096 -8.81175 -8.14445 -7.83512 -6.29833 -4.32477 0.34091 0.81839 2.36927 2.50968 3.07862 3.16233 3.17604 3.18890 3.35746 3.46715 3.63627 3.71712 4.04457 4.17446 4.29235 4.42918 4.54934 4.69493 4.88729 4.93541 5.00242 5.08168 5.16022 5.28257 5.41598 5.43145 5.50643 5.54718 5.66786 5.68152 5.71177 5.75969 5.77526 5.82978 5.84587 6.09708 6.13552 6.17734 6.25179 6.30056 6.40268 6.49489 6.59646 6.61229 6.87768 7.19535 7.26535 7.36102 8.04099 8.33452 8.74534 8.84513 9.28834 10.82768 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003068 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.385165 B = 9125.709498 C =10203.817046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.588 5.588 4 C 0.208 3.792 5 C -0.544 4.544 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.889 5.889 9 Si 0.870 3.130 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.527 3.473 14 O -0.560 6.560 15 C -0.123 4.123 16 H 0.120 0.880 17 C -0.109 4.109 18 C 0.031 3.969 19 N -0.461 5.461 20 C 0.115 3.885 21 C -0.150 4.150 22 C -0.048 4.048 23 C -0.041 4.041 24 C 0.262 3.738 25 N -0.421 5.421 26 C -0.080 4.080 27 C 0.076 3.924 28 F -0.123 7.123 29 C 0.053 3.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.267 0.733 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.061 0.939 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 9.548 9.183 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.318 5.318 4 C 0.086 3.914 5 C -0.583 4.583 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.526 5.526 9 Si 0.696 3.304 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.188 1.188 13 C 0.315 3.685 14 O -0.439 6.439 15 C -0.144 4.144 16 H 0.138 0.862 17 C -0.147 4.147 18 C -0.095 4.095 19 N -0.174 5.174 20 C 0.012 3.988 21 C -0.171 4.171 22 C -0.070 4.070 23 C -0.046 4.046 24 C -0.053 4.053 25 N -0.097 5.097 26 C -0.102 4.102 27 C 0.054 3.946 28 F -0.101 7.101 29 C -0.071 4.071 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.080 0.920 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.797 10.037 10.776 16.663 hybrid contribution -0.052 0.298 -1.500 1.531 sum -7.849 10.335 9.276 15.951 Atomic orbital electron populations 1.22120 0.96859 1.01457 1.01753 1.21260 0.93178 0.83410 1.02951 1.47908 1.63104 1.13390 1.07412 1.19840 0.97184 0.92980 0.81361 1.21396 0.95479 1.33070 1.08309 0.90340 1.24894 0.94773 0.95874 0.97199 1.69893 1.13269 1.44341 1.25077 0.86950 0.81211 0.81389 0.80842 1.19804 1.20812 1.18810 1.20041 0.76935 0.88110 0.83440 1.90617 1.52679 1.69477 1.31171 1.22202 0.99106 0.93803 0.99339 0.86211 1.22440 0.97535 0.94807 0.99918 1.23554 0.99032 0.96702 0.90225 1.61522 1.23107 1.10522 1.22239 1.19481 0.91371 0.92558 0.95376 1.21101 1.02942 0.90792 1.02263 1.21040 0.92926 1.00394 0.92595 1.15581 0.99858 0.89431 0.99699 1.25517 0.93220 0.93270 0.93315 1.81269 1.09631 1.09379 1.09392 1.20953 0.98809 0.91014 0.99399 1.16989 1.00163 0.78598 0.98823 1.91570 1.95124 1.30333 1.93081 1.23020 0.93816 0.95625 0.94645 0.92735 0.92828 0.92217 0.90086 0.90951 0.94918 0.95154 0.92280 0.89491 0.90079 0.88742 0.91254 0.83300 0.84286 0.83606 0.92022 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.21 37.16 0.38 -1.97 16 2 C 0.12 1.99 6.13 -4.04 -0.02 1.97 16 3 N -0.59 -11.28 2.46 -175.05 -0.43 -11.71 16 4 C 0.21 4.24 3.86 -5.19 -0.02 4.22 16 5 C -0.54 -13.62 9.84 -34.44 -0.34 -13.96 16 6 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 7 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.89 -24.92 13.96 55.43 0.77 -24.15 16 9 Si 0.87 18.60 27.47 -169.99 -4.67 13.93 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 13 C 0.53 9.98 6.66 -10.98 -0.07 9.91 16 14 O -0.56 -11.82 15.22 5.56 0.08 -11.73 16 15 C -0.12 -1.94 2.43 -90.41 -0.22 -2.16 16 16 H 0.12 2.04 6.55 -51.93 -0.34 1.70 16 17 C -0.11 -1.34 6.36 -24.87 -0.16 -1.49 16 18 C 0.03 0.31 5.15 -1.89 -0.01 0.30 16 19 N -0.46 -5.81 5.28 -167.07 -0.88 -6.69 16 20 C 0.11 1.25 5.46 -83.72 -0.46 0.80 16 21 C -0.15 -1.20 8.78 -39.46 -0.35 -1.55 16 22 C -0.05 -0.35 9.74 -39.20 -0.38 -0.73 16 23 C -0.04 -0.35 5.74 -106.80 -0.61 -0.96 16 24 C 0.26 2.62 15.33 -22.47 -0.34 2.28 16 25 N -0.42 -5.18 18.54 41.84 0.78 -4.41 16 26 C -0.08 -0.73 9.72 -39.14 -0.38 -1.11 16 27 C 0.08 0.87 6.90 -39.32 -0.27 0.60 16 28 F -0.12 -1.68 15.36 2.25 0.03 -1.65 16 29 C 0.05 0.80 4.91 -2.76 -0.01 0.79 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 34 H 0.07 1.29 7.51 -51.93 -0.39 0.91 16 35 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 36 H 0.03 0.58 5.17 -51.93 -0.27 0.31 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.09 0.95 7.86 -51.93 -0.41 0.55 16 39 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 40 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.07 0.58 6.60 -51.93 -0.34 0.24 16 42 H 0.15 0.88 5.92 -52.49 -0.31 0.57 16 43 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 45 H 0.06 0.88 7.67 -51.93 -0.40 0.48 16 46 H 0.11 1.95 6.03 -51.93 -0.31 1.63 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -30.64 383.11 -8.01 -38.64 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.09 Total: 3.20 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.37 Total: -1.21 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.23 Total: -46.96 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.03 Total: -1.65 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.67 Total: 13.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.64 -8.01 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285894177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.458 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds