Wall clock time and date at job start Wed Apr 1 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47386 * 2 1 4 4 C 1.46504 * 119.99749 * 265.54282 * 3 2 1 5 5 C 1.50701 * 109.47088 * 273.46030 * 4 3 2 6 6 H 1.07997 * 119.99671 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99782 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99753 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00203 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46886 * 90.00472 * 9 7 5 11 11 H 1.48497 * 109.47186 * 210.00368 * 9 7 5 12 12 H 1.48501 * 109.47290 * 330.00580 * 9 7 5 13 13 C 1.34777 * 120.00430 * 85.53738 * 3 2 1 14 14 O 1.21277 * 119.99906 * 4.01629 * 13 3 2 15 15 C 1.50703 * 120.00134 * 184.01281 * 13 3 2 16 16 H 1.08999 * 110.27095 * 326.45191 * 15 13 3 17 17 C 1.54593 * 110.30994 * 88.65229 * 15 13 3 18 18 C 1.54934 * 102.92376 * 140.87438 * 17 15 13 19 19 N 1.48542 * 103.22270 * 322.58263 * 18 17 15 20 20 C 1.39343 * 110.99515 * 159.72354 * 19 18 17 21 21 C 1.39098 * 119.93278 * 8.41164 * 20 19 18 22 22 C 1.37693 * 120.10160 * 179.72558 * 21 20 19 23 23 C 1.39784 * 119.96267 * 0.02562 * 22 21 20 24 24 C 1.43202 * 120.07105 * 179.97438 * 23 22 21 25 25 N 9.89670 * 160.40439 * 199.91567 * 13 1 2 26 26 C 1.39816 * 119.86609 * 0.02562 * 23 22 21 27 27 C 1.37843 * 119.89129 * 359.97438 * 26 23 22 28 28 F 1.35094 * 119.97790 * 179.97438 * 27 26 23 29 29 C 1.47896 * 105.81890 * 39.21133 * 19 18 17 30 30 H 1.08999 * 109.46954 * 300.00727 * 1 2 3 31 31 H 1.08999 * 109.46534 * 60.00452 * 1 2 3 32 32 H 1.08997 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47603 * 239.99651 * 2 1 3 34 34 H 1.09001 * 109.47022 * 119.99723 * 2 1 3 35 35 H 1.09002 * 109.47374 * 33.46492 * 4 3 2 36 36 H 1.09004 * 109.47154 * 153.46055 * 4 3 2 37 37 H 0.96999 * 119.99440 * 179.97438 * 8 7 5 38 38 H 1.08998 * 110.72057 * 259.23273 * 17 15 13 39 39 H 1.08998 * 110.72297 * 22.33200 * 17 15 13 40 40 H 1.08996 * 110.66562 * 204.15317 * 18 17 15 41 41 H 1.08993 * 110.66871 * 81.01251 * 18 17 15 42 42 H 1.07998 * 119.94655 * 359.70231 * 21 20 19 43 43 H 1.08004 * 120.01864 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.05724 * 179.97438 * 26 23 22 45 45 H 1.09003 * 109.91977 * 94.02256 * 29 19 18 46 46 H 1.09006 * 109.91557 * 215.11235 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3555 2.0389 -1.2650 5 6 3.7826 1.7219 -1.6312 6 1 4.3786 1.0930 -0.9864 7 6 4.3272 2.2346 -2.7894 8 7 5.5725 1.9576 -3.1093 9 14 3.2960 3.3217 -3.9049 10 1 3.4542 4.7408 -3.4970 11 1 3.7466 3.1575 -5.3103 12 1 1.8676 2.9311 -3.7942 13 6 2.1575 2.0469 1.1636 14 8 1.9483 1.4801 2.2152 15 6 2.5730 3.4955 1.1580 16 1 3.2539 3.6898 0.3294 17 6 1.3303 4.4098 1.0600 18 6 1.6850 5.5798 2.0117 19 7 2.3997 4.9064 3.1263 20 6 3.1803 5.8140 3.8394 21 6 3.0749 7.1761 3.5776 22 6 3.8404 8.0764 4.2841 23 6 4.7255 7.6213 5.2657 24 6 5.5232 8.5555 6.0015 25 7 6.1555 9.2968 6.5857 26 6 4.8311 6.2518 5.5269 27 6 4.0619 5.3555 4.8162 28 9 4.1630 4.0319 5.0668 29 6 3.2399 3.8653 2.4959 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6904 1.6792 -2.0501 36 1 2.2393 3.1172 -1.1561 37 1 5.9554 2.3181 -3.9243 38 1 1.1957 4.7695 0.0400 39 1 0.4382 3.8862 1.4037 40 1 0.7807 6.0685 2.3742 41 1 2.3378 6.2965 1.5136 42 1 2.3917 7.5279 2.8187 43 1 3.7578 9.1337 4.0795 44 1 5.5142 5.8967 6.2843 45 1 4.2418 4.2552 2.3161 46 1 3.2932 2.9893 3.1424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285894177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:31 Heat of formation + Delta-G solvation = -25.375566 kcal Electronic energy + Delta-G solvation = -30210.493166 eV Core-core repulsion = 26014.397192 eV Total energy + Delta-G solvation = -4196.095974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.89203 -41.75630 -40.61291 -38.98932 -37.32111 -36.93653 -34.70820 -34.12343 -32.16442 -31.97617 -30.12069 -30.10497 -29.33802 -25.53843 -24.76420 -24.49416 -23.72628 -22.41664 -21.97837 -20.19771 -19.66450 -19.02596 -18.58384 -18.22991 -17.55567 -17.15556 -16.95452 -16.79057 -16.30557 -16.00663 -15.77637 -15.48061 -15.05954 -14.96577 -14.80953 -14.70705 -14.60977 -14.46718 -14.13061 -14.09303 -13.93375 -13.57558 -13.51913 -13.27830 -13.16727 -12.94670 -12.83454 -12.60750 -12.52416 -12.41015 -12.35751 -12.18877 -12.01744 -11.89520 -11.75695 -11.63667 -10.81336 -10.78483 -10.60888 -9.97872 -9.43398 -8.99040 -8.27700 -6.36925 -0.40750 0.12716 1.43079 1.46571 1.56063 1.56727 1.68801 1.74634 2.27468 2.37785 2.56887 2.71021 2.84677 3.06392 3.28322 3.37747 3.52330 3.67590 3.78721 3.98173 4.11695 4.14490 4.20272 4.26765 4.36091 4.39439 4.51036 4.53430 4.61031 4.66293 4.72361 4.82778 4.84812 4.87560 4.88615 4.93862 5.00121 5.03983 5.04700 5.14126 5.17596 5.30313 5.46495 5.49085 5.65579 5.75508 6.06308 6.19423 6.40918 6.63700 6.71304 7.24637 7.36291 8.88891 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003068 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.385165 B = 9125.709498 C =10203.817046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.546 4.546 6 H 0.022 0.978 7 C 0.016 3.984 8 N -0.946 5.946 9 Si 0.943 3.057 10 H -0.252 1.252 11 H -0.291 1.291 12 H -0.234 1.234 13 C 0.520 3.480 14 O -0.589 6.589 15 C -0.123 4.123 16 H 0.106 0.894 17 C -0.104 4.104 18 C 0.034 3.966 19 N -0.476 5.476 20 C 0.099 3.901 21 C -0.137 4.137 22 C -0.030 4.030 23 C -0.040 4.040 24 C 0.286 3.714 25 N -0.462 5.462 26 C -0.076 4.076 27 C 0.046 3.954 28 F -0.147 7.147 29 C 0.063 3.937 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.268 0.732 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.181 0.819 43 H 0.173 0.827 44 H 0.154 0.846 45 H 0.058 0.942 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 13.032 7.939 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 N -0.325 5.325 4 C 0.096 3.904 5 C -0.584 4.584 6 H 0.041 0.959 7 C -0.182 4.182 8 N -0.585 5.585 9 Si 0.765 3.235 10 H -0.176 1.176 11 H -0.217 1.217 12 H -0.157 1.157 13 C 0.309 3.691 14 O -0.471 6.471 15 C -0.145 4.145 16 H 0.124 0.876 17 C -0.143 4.143 18 C -0.091 4.091 19 N -0.189 5.189 20 C -0.003 4.003 21 C -0.158 4.158 22 C -0.051 4.051 23 C -0.045 4.045 24 C -0.028 4.028 25 N -0.138 5.138 26 C -0.097 4.097 27 C 0.024 3.976 28 F -0.125 7.125 29 C -0.063 4.063 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.111 0.889 42 H 0.198 0.802 43 H 0.191 0.809 44 H 0.171 0.829 45 H 0.077 0.923 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.732 13.524 9.560 19.735 hybrid contribution 0.964 -0.885 -1.017 1.658 sum -9.768 12.639 8.543 18.114 Atomic orbital electron populations 1.21994 0.93925 1.03085 1.01734 1.21397 0.95563 0.82658 1.01942 1.48024 1.63174 1.14024 1.07253 1.19696 0.94150 0.94509 0.82065 1.21550 0.97428 1.31894 1.07542 0.95935 1.25887 0.95905 0.97509 0.98936 1.70080 1.15888 1.46502 1.26017 0.85783 0.80500 0.79854 0.77378 1.17606 1.21716 1.15673 1.20656 0.76145 0.89442 0.82832 1.90596 1.53943 1.70476 1.32045 1.22204 1.00801 0.92305 0.99171 0.87556 1.22511 0.95090 0.94691 1.01959 1.23745 1.00358 0.95979 0.89007 1.61470 1.23186 1.10996 1.23239 1.19676 0.91699 0.93616 0.95284 1.21413 1.02821 0.89133 1.02391 1.21407 0.90975 1.01960 0.90720 1.15624 1.00150 0.88623 1.00123 1.25577 0.92349 0.92527 0.92391 1.81303 1.10947 1.10828 1.10695 1.21010 0.98374 0.91187 0.99161 1.17346 1.01923 0.77945 1.00379 1.91508 1.95454 1.32138 1.93435 1.22721 0.94307 0.95545 0.93688 0.93645 0.91733 0.89836 0.90531 0.92581 0.93605 0.92529 0.92303 0.87281 0.90847 0.85765 0.88864 0.80194 0.80910 0.82858 0.92315 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 10.21 71.98 0.73 -3.35 16 2 C 0.11 3.77 6.13 86.38 0.53 4.30 16 3 N -0.60 -23.04 2.46 -826.14 -2.04 -25.07 16 4 C 0.22 8.65 3.86 85.63 0.33 8.98 16 5 C -0.55 -28.01 9.84 25.60 0.25 -27.76 16 6 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 7 C 0.02 0.84 5.47 84.65 0.46 1.31 16 8 N -0.95 -54.77 13.96 21.45 0.30 -54.48 16 9 Si 0.94 36.82 27.47 68.60 1.88 38.70 16 10 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 11 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.23 -7.97 6.54 99.48 0.65 -7.32 16 13 C 0.52 20.19 6.66 87.66 0.58 20.77 16 14 O -0.59 -26.03 15.22 -3.02 -0.05 -26.08 16 15 C -0.12 -3.85 2.43 -10.66 -0.03 -3.88 16 16 H 0.11 3.60 6.55 -2.39 -0.02 3.58 16 17 C -0.10 -2.27 6.36 31.80 0.20 -2.07 16 18 C 0.03 0.55 5.15 86.65 0.45 0.99 16 19 N -0.48 -11.34 5.28 -682.50 -3.61 -14.95 16 20 C 0.10 1.99 5.46 38.42 0.21 2.20 16 21 C -0.14 -1.63 8.78 22.35 0.20 -1.43 16 22 C -0.03 -0.30 9.74 22.51 0.22 -0.08 16 23 C -0.04 -0.60 5.74 -21.28 -0.12 -0.72 16 24 C 0.29 5.19 15.33 88.33 1.35 6.55 16 25 N -0.46 -10.80 18.54 19.00 0.35 -10.45 16 26 C -0.08 -1.33 9.72 22.56 0.22 -1.11 16 27 C 0.05 1.04 6.90 22.44 0.15 1.20 16 28 F -0.15 -4.31 15.36 44.97 0.69 -3.62 16 29 C 0.06 1.93 4.91 86.45 0.42 2.36 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.71 8.04 -2.39 -0.02 2.69 16 34 H 0.06 2.12 7.51 -2.39 -0.02 2.10 16 35 H 0.05 1.74 7.16 -2.39 -0.02 1.72 16 36 H 0.06 1.99 5.17 -2.39 -0.01 1.98 16 37 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.11 1.89 7.86 -2.39 -0.02 1.87 16 39 H 0.07 1.73 7.85 -2.39 -0.02 1.71 16 40 H 0.12 1.32 8.12 -2.39 -0.02 1.30 16 41 H 0.09 1.07 6.60 -2.39 -0.02 1.06 16 42 H 0.18 1.02 5.92 -2.91 -0.02 1.01 16 43 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 44 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 45 H 0.06 1.76 7.67 -2.39 -0.02 1.74 16 46 H 0.07 2.85 6.03 -2.38 -0.01 2.83 16 Total: -1.00 -72.63 383.11 4.67 -67.96 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.96 Total: 19.73 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.17 Total: 8.25 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -4.99 Total: -104.94 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.69 Total: -3.62 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 1.88 Total: 38.70 kcal Total: -72.63 4.67 -67.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285894177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.585 kcal (2) G-P(sol) polarization free energy of solvation -72.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds