Wall clock time and date at job start Wed Apr 1 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35049 * 126.39320 * 2 1 4 4 N 1.30493 * 108.69744 * 180.26794 * 3 2 1 5 5 C 1.34132 * 109.25652 * 359.76834 * 4 3 2 6 6 C 1.34667 * 108.02069 * 359.97438 * 5 4 3 7 7 C 1.50705 * 126.59206 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47087 * 95.02380 * 7 6 5 9 9 C 1.34776 * 119.99988 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00100 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00018 * 179.97438 * 9 8 7 12 12 C 1.39594 * 119.99902 * 179.97438 * 11 9 8 13 13 N 1.32268 * 119.72347 * 0.29564 * 12 11 9 14 14 C 1.31970 * 121.68397 * 180.28583 * 13 12 11 15 15 C 1.38074 * 120.95656 * 359.70589 * 14 13 12 16 16 C 1.38794 * 119.35179 * 359.97438 * 15 14 13 17 17 C 1.38781 * 118.44773 * 359.97438 * 16 15 14 18 18 O 1.35983 * 120.49767 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99537 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46748 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00305 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99832 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46901 * 89.99815 * 25 23 21 27 27 H 1.48488 * 109.47487 * 210.00255 * 25 23 21 28 28 H 1.48503 * 109.47026 * 330.00635 * 25 23 21 29 29 H 1.09003 * 109.47654 * 270.11509 * 1 2 3 30 30 H 1.08998 * 109.47419 * 30.12488 * 1 2 3 31 31 H 1.09007 * 109.47016 * 150.11996 * 1 2 3 32 32 H 1.07999 * 125.64767 * 0.07413 * 3 2 1 33 33 H 1.08006 * 125.98928 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46900 * 335.02360 * 7 6 5 35 35 H 1.08995 * 109.46839 * 215.02656 * 7 6 5 36 36 H 0.97000 * 120.00201 * 0.02562 * 8 7 6 37 37 H 0.97000 * 120.00172 * 0.02562 * 11 9 8 38 38 H 1.08000 * 119.52522 * 179.72561 * 14 13 12 39 39 H 1.07998 * 120.32407 * 180.02562 * 15 14 13 40 40 H 1.07993 * 120.77632 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47490 * 59.99651 * 19 18 17 42 42 H 1.09001 * 109.47232 * 299.99005 * 19 18 17 43 43 H 1.08993 * 109.46955 * 299.99993 * 20 19 18 44 44 H 1.09000 * 109.47050 * 59.99822 * 20 19 18 45 45 H 0.97002 * 120.00008 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5094 0.6905 -0.0058 5 6 3.5460 -0.6504 -0.0045 6 6 2.2772 -1.1017 0.0029 7 6 1.8364 -2.5428 0.0063 8 7 1.5856 -2.9735 1.3839 9 6 1.1782 -4.2339 1.6323 10 8 1.0193 -5.0138 0.7131 11 7 0.9479 -4.6303 2.8997 12 6 0.5255 -5.9357 3.1569 13 7 0.3586 -6.7807 2.1532 14 6 -0.0447 -8.0216 2.3515 15 6 -0.3036 -8.4893 3.6246 16 6 -0.1358 -7.6394 4.7089 17 6 0.2903 -6.3402 4.4708 18 8 0.4680 -5.4722 5.5024 19 6 0.1976 -5.9630 6.8170 20 6 0.4523 -4.8525 7.8383 21 6 0.1666 -5.3698 9.2245 22 1 -0.1640 -6.3886 9.3632 23 6 0.3262 -4.5423 10.3157 24 7 0.0764 -4.9936 11.5254 25 14 0.8974 -2.7799 10.0758 26 1 -0.2830 -1.8978 9.8920 27 1 1.6626 -2.3406 11.2700 28 1 1.7664 -2.7005 8.8742 29 1 -0.3634 0.0021 1.0277 30 1 -0.3634 0.8888 -0.5158 31 1 -0.3633 -0.8911 -0.5120 32 1 1.9333 2.1145 0.0011 33 1 4.4369 -1.2610 -0.0079 34 1 2.6185 -3.1630 -0.4316 35 1 0.9221 -2.6444 -0.5783 36 1 1.7120 -2.3512 2.1172 37 1 1.0750 -4.0083 3.6331 38 1 -0.1737 -8.6809 1.5059 39 1 -0.6328 -9.5068 3.7751 40 1 -0.3313 -7.9812 5.7144 41 1 0.8506 -6.8092 7.0304 42 1 -0.8428 -6.2822 6.8788 43 1 1.4927 -4.5336 7.7763 44 1 -0.2005 -4.0060 7.6250 45 1 0.1890 -4.4114 12.2931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290474992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:29 Heat of formation + Delta-G solvation = 50.487275 kcal Electronic energy + Delta-G solvation = -28862.746618 eV Core-core repulsion = 24689.860266 eV Total energy + Delta-G solvation = -4172.886352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.52615 -40.98675 -39.60573 -37.91334 -35.49032 -34.72828 -34.33729 -33.46934 -31.75874 -31.18240 -30.55745 -29.10937 -27.44209 -26.19509 -25.63628 -23.50998 -22.81488 -21.85650 -21.17113 -20.64983 -20.46796 -18.87071 -18.29191 -17.75679 -17.23579 -16.63075 -16.29073 -16.06325 -16.02829 -15.60099 -15.39945 -14.87196 -14.63664 -14.41342 -14.26930 -14.03832 -13.93667 -13.84755 -13.39437 -13.32691 -13.10564 -13.00590 -12.80926 -12.59225 -12.23010 -12.08369 -11.27536 -11.01335 -10.80809 -10.57858 -10.37038 -10.33986 -10.18319 -10.02024 -9.96098 -9.47340 -9.41169 -9.21647 -9.19844 -8.84684 -8.72093 -7.72703 -6.22717 -4.24537 1.20248 1.39446 1.40799 2.30028 2.44095 2.82690 3.09568 3.19700 3.28050 3.30817 3.41029 3.87502 3.98546 4.11149 4.24842 4.29433 4.33712 4.59801 4.62181 4.70947 4.90138 4.90642 4.99933 5.05895 5.11047 5.17725 5.30223 5.35276 5.42095 5.73751 5.76582 5.91771 5.98387 6.10754 6.11844 6.26136 6.30382 6.34699 6.46418 6.68273 6.73575 6.92645 7.08948 7.47179 7.55927 7.64997 7.66636 8.15752 8.28319 8.49673 8.77559 9.36893 10.89721 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007825 B = 0.002778 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.581874 B =10078.349213 C =13184.065042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.454 5.454 3 C 0.191 3.809 4 N -0.495 5.495 5 C 0.003 3.997 6 C -0.053 4.053 7 C 0.222 3.778 8 N -0.746 5.746 9 C 0.698 3.302 10 O -0.534 6.534 11 N -0.661 5.661 12 C 0.346 3.654 13 N -0.442 5.442 14 C 0.078 3.922 15 C -0.161 4.161 16 C -0.144 4.144 17 C 0.064 3.936 18 O -0.321 6.321 19 C 0.074 3.926 20 C -0.007 4.007 21 C -0.529 4.529 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.881 3.119 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.264 1.264 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.207 0.793 33 H 0.173 0.827 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.398 0.602 37 H 0.419 0.581 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 5.959 -23.865 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.137 5.137 3 C -0.092 4.092 4 N -0.213 5.213 5 C -0.147 4.147 6 C -0.167 4.167 7 C 0.097 3.903 8 N -0.404 5.404 9 C 0.398 3.602 10 O -0.405 6.405 11 N -0.311 5.311 12 C 0.113 3.887 13 N -0.156 5.156 14 C -0.078 4.078 15 C -0.183 4.183 16 C -0.171 4.171 17 C 0.012 3.988 18 O -0.234 6.234 19 C 0.000 4.000 20 C -0.045 4.045 21 C -0.567 4.567 22 H 0.093 0.907 23 C -0.130 4.130 24 N -0.533 5.533 25 Si 0.708 3.292 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.188 1.188 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.224 0.776 33 H 0.190 0.810 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.232 0.768 37 H 0.256 0.744 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.309 6.354 -25.424 26.208 hybrid contribution -0.671 0.579 1.887 2.085 sum -0.362 6.932 -23.537 24.539 Atomic orbital electron populations 1.22119 0.76264 1.04935 1.04114 1.45365 1.07804 1.06632 1.53867 1.25061 0.85600 0.93532 1.04991 1.70361 1.19383 1.11880 1.19667 1.22239 0.95745 0.91143 1.05569 1.21169 0.91528 0.89390 1.14599 1.19302 1.01714 0.86708 0.82583 1.45250 1.74016 1.11939 1.09161 1.15898 0.78913 0.82277 0.83156 1.91044 1.55260 1.51873 1.42320 1.42468 1.69002 1.11187 1.08402 1.17464 0.98990 0.85926 0.86349 1.67628 1.13462 1.03409 1.31131 1.22435 0.97645 0.91308 0.96454 1.21910 1.02494 1.00930 0.92948 1.21620 1.01920 0.92338 1.01207 1.19490 1.00548 0.90953 0.87786 1.86045 1.83208 1.38530 1.15605 1.23137 0.99954 0.99778 0.77164 1.19580 0.97865 0.93928 0.93096 1.20809 1.47121 1.00552 0.88233 0.90702 1.24933 0.94427 0.98663 0.94931 1.69885 1.48418 1.36721 0.98305 0.86759 0.79448 0.84886 0.78148 1.20083 1.21101 1.18824 0.90118 0.89145 0.89389 0.77647 0.81007 0.88915 0.90888 0.76826 0.74371 0.82558 0.84681 0.83588 0.92286 0.92342 0.95389 0.95888 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.01 59.85 0.66 0.92 16 2 N -0.45 -3.14 3.15 -121.36 -0.38 -3.52 16 3 C 0.19 1.47 12.56 -90.38 -1.14 0.33 16 4 N -0.50 -5.29 11.25 -14.66 -0.16 -5.45 16 5 C 0.00 0.03 11.79 -17.81 -0.21 -0.18 16 6 C -0.05 -0.43 6.32 -81.60 -0.52 -0.95 16 7 C 0.22 1.87 5.91 -5.19 -0.03 1.84 16 8 N -0.75 -7.13 5.55 -66.42 -0.37 -7.50 16 9 C 0.70 9.38 8.53 -86.92 -0.74 8.64 16 10 O -0.53 -9.02 14.59 5.29 0.08 -8.94 16 11 N -0.66 -9.01 5.40 -15.67 -0.08 -9.09 16 12 C 0.35 5.44 7.45 -154.43 -1.15 4.29 16 13 N -0.44 -7.09 7.87 -12.22 -0.10 -7.18 16 14 C 0.08 1.02 11.17 -17.55 -0.20 0.82 16 15 C -0.16 -1.92 10.10 -39.44 -0.40 -2.32 16 16 C -0.14 -2.00 9.14 -39.17 -0.36 -2.36 16 17 C 0.06 1.00 6.72 -38.92 -0.26 0.74 16 18 O -0.32 -5.46 9.39 -19.69 -0.18 -5.65 16 19 C 0.07 1.37 4.70 37.16 0.17 1.54 16 20 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 21 C -0.53 -14.17 9.66 -34.44 -0.33 -14.51 16 22 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 23 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 24 N -0.90 -26.38 13.96 55.43 0.77 -25.60 16 25 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.34 7.30 -51.93 -0.38 -0.04 16 32 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.17 1.40 8.06 -52.48 -0.42 0.97 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.62 7.37 -51.93 -0.38 0.23 16 36 H 0.40 3.24 8.48 -40.82 -0.35 2.89 16 37 H 0.42 4.97 8.06 -40.82 -0.33 4.64 16 38 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.15 1.89 6.44 -52.49 -0.34 1.55 16 41 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 42 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 43 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 44 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -35.60 385.09 -9.90 -45.50 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.89 Total: 5.23 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -4.72 Total: 0.46 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.32 Total: -58.35 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.11 Total: -14.59 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.60 -9.90 -45.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290474992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.984 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds