Wall clock time and date at job start Wed Apr 1 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35049 * 126.39320 * 2 1 4 4 N 1.30493 * 108.69744 * 180.26794 * 3 2 1 5 5 C 1.34132 * 109.25652 * 359.76834 * 4 3 2 6 6 C 1.34667 * 108.02069 * 359.97438 * 5 4 3 7 7 C 1.50705 * 126.59206 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47087 * 95.02380 * 7 6 5 9 9 C 1.34776 * 119.99988 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00100 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00018 * 179.97438 * 9 8 7 12 12 C 1.39594 * 119.99902 * 179.97438 * 11 9 8 13 13 N 1.32268 * 119.72347 * 0.29564 * 12 11 9 14 14 C 1.31970 * 121.68397 * 180.28583 * 13 12 11 15 15 C 1.38074 * 120.95656 * 359.70589 * 14 13 12 16 16 C 1.38794 * 119.35179 * 359.97438 * 15 14 13 17 17 C 1.38781 * 118.44773 * 359.97438 * 16 15 14 18 18 O 1.35983 * 120.49767 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99537 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46748 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00305 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99832 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46901 * 89.99815 * 25 23 21 27 27 H 1.48488 * 109.47487 * 210.00255 * 25 23 21 28 28 H 1.48503 * 109.47026 * 330.00635 * 25 23 21 29 29 H 1.09003 * 109.47654 * 270.11509 * 1 2 3 30 30 H 1.08998 * 109.47419 * 30.12488 * 1 2 3 31 31 H 1.09007 * 109.47016 * 150.11996 * 1 2 3 32 32 H 1.07999 * 125.64767 * 0.07413 * 3 2 1 33 33 H 1.08006 * 125.98928 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46900 * 335.02360 * 7 6 5 35 35 H 1.08995 * 109.46839 * 215.02656 * 7 6 5 36 36 H 0.97000 * 120.00201 * 0.02562 * 8 7 6 37 37 H 0.97000 * 120.00172 * 0.02562 * 11 9 8 38 38 H 1.08000 * 119.52522 * 179.72561 * 14 13 12 39 39 H 1.07998 * 120.32407 * 180.02562 * 15 14 13 40 40 H 1.07993 * 120.77632 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47490 * 59.99651 * 19 18 17 42 42 H 1.09001 * 109.47232 * 299.99005 * 19 18 17 43 43 H 1.08993 * 109.46955 * 299.99993 * 20 19 18 44 44 H 1.09000 * 109.47050 * 59.99822 * 20 19 18 45 45 H 0.97002 * 120.00008 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5094 0.6905 -0.0058 5 6 3.5460 -0.6504 -0.0045 6 6 2.2772 -1.1017 0.0029 7 6 1.8364 -2.5428 0.0063 8 7 1.5856 -2.9735 1.3839 9 6 1.1782 -4.2339 1.6323 10 8 1.0193 -5.0138 0.7131 11 7 0.9479 -4.6303 2.8997 12 6 0.5255 -5.9357 3.1569 13 7 0.3586 -6.7807 2.1532 14 6 -0.0447 -8.0216 2.3515 15 6 -0.3036 -8.4893 3.6246 16 6 -0.1358 -7.6394 4.7089 17 6 0.2903 -6.3402 4.4708 18 8 0.4680 -5.4722 5.5024 19 6 0.1976 -5.9630 6.8170 20 6 0.4523 -4.8525 7.8383 21 6 0.1666 -5.3698 9.2245 22 1 -0.1640 -6.3886 9.3632 23 6 0.3262 -4.5423 10.3157 24 7 0.0764 -4.9936 11.5254 25 14 0.8974 -2.7799 10.0758 26 1 -0.2830 -1.8978 9.8920 27 1 1.6626 -2.3406 11.2700 28 1 1.7664 -2.7005 8.8742 29 1 -0.3634 0.0021 1.0277 30 1 -0.3634 0.8888 -0.5158 31 1 -0.3633 -0.8911 -0.5120 32 1 1.9333 2.1145 0.0011 33 1 4.4369 -1.2610 -0.0079 34 1 2.6185 -3.1630 -0.4316 35 1 0.9221 -2.6444 -0.5783 36 1 1.7120 -2.3512 2.1172 37 1 1.0750 -4.0083 3.6331 38 1 -0.1737 -8.6809 1.5059 39 1 -0.6328 -9.5068 3.7751 40 1 -0.3313 -7.9812 5.7144 41 1 0.8506 -6.8092 7.0304 42 1 -0.8428 -6.2822 6.8788 43 1 1.4927 -4.5336 7.7763 44 1 -0.2005 -4.0060 7.6250 45 1 0.1890 -4.4114 12.2931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290474992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:28 Heat of formation + Delta-G solvation = 27.059343 kcal Electronic energy + Delta-G solvation = -28863.762530 eV Core-core repulsion = 24689.860266 eV Total energy + Delta-G solvation = -4173.902264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.12810 -42.07121 -40.67972 -39.14522 -36.36521 -35.80617 -35.39225 -34.89149 -33.06123 -32.57587 -31.55146 -30.18435 -27.85541 -27.31241 -26.92532 -24.75509 -23.92757 -22.60309 -22.45197 -21.81785 -21.19196 -19.92560 -19.46878 -19.03723 -18.26574 -17.86557 -17.25047 -17.24462 -16.90400 -16.68596 -16.30550 -16.16819 -15.61774 -15.56410 -15.37952 -15.17443 -14.93452 -14.74281 -14.57777 -14.11510 -13.97255 -13.87809 -13.78976 -13.65631 -13.32995 -13.26483 -12.84269 -12.71308 -12.19481 -11.88765 -11.83024 -11.66598 -11.64457 -11.46107 -11.03055 -10.80881 -10.59863 -10.44932 -10.26814 -10.17971 -9.50491 -8.83198 -8.33860 -6.40573 0.15049 0.30156 0.74695 1.36537 1.39013 1.50075 1.53549 1.84821 2.06789 2.10471 2.14525 2.33500 2.91749 2.98659 3.01833 3.48358 3.58177 3.86069 3.86498 3.94094 3.97244 4.05967 4.13590 4.24673 4.30526 4.34603 4.43898 4.47138 4.57763 4.67637 4.71608 4.76108 4.95675 5.06205 5.15685 5.27031 5.27442 5.32307 5.32428 5.48014 5.56423 5.67423 5.76496 6.16579 6.21928 6.29756 6.66182 6.66316 7.04640 7.13200 7.24748 7.48788 8.81759 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007825 B = 0.002778 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.581874 B =10078.349213 C =13184.065042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.452 5.452 3 C 0.195 3.805 4 N -0.537 5.537 5 C -0.016 4.016 6 C -0.052 4.052 7 C 0.228 3.772 8 N -0.728 5.728 9 C 0.698 3.302 10 O -0.570 6.570 11 N -0.659 5.659 12 C 0.333 3.667 13 N -0.471 5.471 14 C 0.077 3.923 15 C -0.149 4.149 16 C -0.148 4.148 17 C 0.041 3.959 18 O -0.325 6.325 19 C 0.087 3.913 20 C -0.005 4.005 21 C -0.535 4.535 22 H 0.043 0.957 23 C 0.012 3.988 24 N -0.944 5.944 25 Si 0.947 3.053 26 H -0.265 1.265 27 H -0.284 1.284 28 H -0.246 1.246 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.240 0.760 33 H 0.175 0.825 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.407 0.593 37 H 0.425 0.575 38 H 0.186 0.814 39 H 0.173 0.827 40 H 0.153 0.847 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 6.901 -25.369 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.133 5.133 3 C -0.088 4.088 4 N -0.256 5.256 5 C -0.166 4.166 6 C -0.167 4.167 7 C 0.103 3.897 8 N -0.386 5.386 9 C 0.398 3.602 10 O -0.445 6.445 11 N -0.309 5.309 12 C 0.099 3.901 13 N -0.186 5.186 14 C -0.079 4.079 15 C -0.170 4.170 16 C -0.174 4.174 17 C -0.010 4.010 18 O -0.238 6.238 19 C 0.012 3.988 20 C -0.043 4.043 21 C -0.573 4.573 22 H 0.061 0.939 23 C -0.186 4.186 24 N -0.584 5.584 25 Si 0.770 3.230 26 H -0.190 1.190 27 H -0.210 1.210 28 H -0.170 1.170 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.256 0.744 33 H 0.192 0.808 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.242 0.758 37 H 0.263 0.737 38 H 0.203 0.797 39 H 0.190 0.810 40 H 0.171 0.829 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.212 7.324 -26.941 27.920 hybrid contribution -0.569 0.169 2.279 2.355 sum -0.781 7.493 -24.662 25.787 Atomic orbital electron populations 1.22361 0.74324 1.06265 1.04862 1.45539 1.08924 1.05952 1.52916 1.25710 0.84976 0.94882 1.03202 1.70331 1.21325 1.12402 1.21520 1.22428 0.96561 0.91280 1.06327 1.21008 0.91423 0.89499 1.14770 1.19265 1.01712 0.86867 0.81808 1.45133 1.72674 1.10759 1.10020 1.16007 0.78689 0.82875 0.82646 1.91010 1.57038 1.53171 1.43264 1.42464 1.68820 1.10910 1.08723 1.17627 0.99445 0.86634 0.86349 1.67686 1.14568 1.04721 1.31637 1.23039 0.96147 0.90739 0.98017 1.22262 1.00776 1.02164 0.91751 1.21875 1.01303 0.91981 1.02280 1.19605 1.02469 0.91663 0.87264 1.85967 1.83877 1.38925 1.15065 1.22746 1.00271 0.98225 0.77551 1.19431 0.97866 0.95163 0.91804 1.21126 1.46158 0.99331 0.90701 0.93890 1.25880 0.94676 1.03484 0.94520 1.70029 1.50322 1.38625 0.99393 0.85700 0.79480 0.79149 0.78622 1.18990 1.21022 1.16962 0.89601 0.86541 0.89448 0.74394 0.80759 0.89286 0.90580 0.75784 0.73651 0.79734 0.81000 0.82931 0.92065 0.91943 0.95240 0.95241 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 11.01 127.77 1.41 1.75 16 2 N -0.45 -5.46 3.15 -537.88 -1.70 -7.15 16 3 C 0.20 2.65 12.56 180.26 2.26 4.92 16 4 N -0.54 -11.12 11.25 -200.31 -2.25 -13.37 16 5 C -0.02 -0.31 11.79 83.52 0.98 0.68 16 6 C -0.05 -0.81 6.32 40.95 0.26 -0.55 16 7 C 0.23 3.71 5.91 85.64 0.51 4.21 16 8 N -0.73 -13.35 5.55 -482.31 -2.68 -16.03 16 9 C 0.70 18.44 8.53 179.06 1.53 19.97 16 10 O -0.57 -19.18 14.59 -4.00 -0.06 -19.24 16 11 N -0.66 -17.61 5.40 -321.75 -1.74 -19.35 16 12 C 0.33 10.21 7.45 132.98 0.99 11.20 16 13 N -0.47 -14.63 7.87 -192.57 -1.52 -16.14 16 14 C 0.08 1.83 11.17 84.63 0.95 2.78 16 15 C -0.15 -3.12 10.10 22.36 0.23 -2.89 16 16 C -0.15 -3.84 9.14 22.53 0.21 -3.63 16 17 C 0.04 1.24 6.72 22.70 0.15 1.39 16 18 O -0.32 -10.74 9.39 -93.36 -0.88 -11.62 16 19 C 0.09 3.14 4.70 71.98 0.34 3.48 16 20 C -0.01 -0.22 4.41 29.85 0.13 -0.09 16 21 C -0.54 -28.91 9.66 25.60 0.25 -28.67 16 22 H 0.04 2.52 7.99 -2.91 -0.02 2.49 16 23 C 0.01 0.69 5.47 84.65 0.46 1.16 16 24 N -0.94 -56.64 13.96 21.45 0.30 -56.34 16 25 Si 0.95 41.93 27.47 68.60 1.88 43.81 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.25 -10.11 6.54 99.48 0.65 -9.45 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.09 0.51 7.30 -2.38 -0.02 0.50 16 32 H 0.24 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.18 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.22 7.37 -2.39 -0.02 1.20 16 36 H 0.41 6.16 8.48 -92.71 -0.79 5.38 16 37 H 0.43 9.79 8.06 -92.71 -0.75 9.04 16 38 H 0.19 3.16 8.06 -2.91 -0.02 3.13 16 39 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.15 3.70 6.44 -2.91 -0.02 3.68 16 41 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 42 H 0.06 2.19 7.70 -2.39 -0.02 2.17 16 43 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 44 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 45 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -78.10 385.09 1.48 -76.62 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.54 Total: 23.11 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 10.65 Total: 15.69 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -9.58 Total: -128.38 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.93 Total: -30.85 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.81 kcal Total: -78.10 1.48 -76.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290474992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.678 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds