Wall clock time and date at job start Wed Apr 1 2020 03:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37361 * 125.82833 * 2 1 4 4 N 1.29406 * 108.82559 * 179.76944 * 3 2 1 5 5 N 1.40167 * 108.14166 * 0.38095 * 4 3 2 6 6 C 1.46500 * 126.35128 * 179.87330 * 5 4 3 7 7 C 1.52997 * 109.47306 * 269.69583 * 6 5 4 8 8 C 1.50699 * 109.46986 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99970 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00222 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99626 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.47198 * 269.99560 * 11 10 8 13 13 H 1.08001 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99899 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00183 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99986 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46884 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47511 * 119.99911 * 16 14 12 19 19 H 1.48501 * 109.47079 * 240.00351 * 16 14 12 20 20 C 1.46503 * 120.00342 * 179.97438 * 10 8 7 21 21 C 1.50695 * 109.47313 * 270.00350 * 20 10 8 22 22 C 1.38678 * 120.41675 * 270.25293 * 21 20 10 23 23 C 1.38627 * 118.41930 * 180.24221 * 22 21 20 24 24 C 1.38232 * 119.16085 * 359.75178 * 23 22 21 25 25 N 1.31857 * 120.76541 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.72235 * 0.02562 * 25 24 23 27 27 C 1.34817 * 125.83549 * 180.02562 * 2 1 3 28 28 O 1.21811 * 126.29874 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.47551 * 269.97611 * 1 2 3 30 30 H 1.09002 * 109.47233 * 29.98374 * 1 2 3 31 31 H 1.09003 * 109.47001 * 149.97530 * 1 2 3 32 32 H 1.08000 * 125.58973 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.46792 * 149.69253 * 6 5 4 34 34 H 1.09001 * 109.46647 * 29.69757 * 6 5 4 35 35 H 1.08999 * 109.47464 * 60.00081 * 7 6 5 36 36 H 1.09002 * 109.46917 * 299.99515 * 7 6 5 37 37 H 1.09000 * 109.46928 * 30.00295 * 11 10 8 38 38 H 1.09006 * 109.46774 * 149.99687 * 11 10 8 39 39 H 0.97003 * 120.00022 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46632 * 150.00159 * 20 10 8 41 41 H 1.08996 * 109.46728 * 30.00153 * 20 10 8 42 42 H 1.07994 * 120.78944 * 359.96926 * 22 21 20 43 43 H 1.07997 * 120.42083 * 179.72800 * 23 22 21 44 44 H 1.07999 * 119.61954 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.61237 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1137 0.0000 4 7 3.5065 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0005 6 6 4.7314 -1.5108 -0.0003 7 6 5.1480 -1.8054 -1.4427 8 6 6.3796 -2.6738 -1.4423 9 8 6.8756 -3.0223 -0.3918 10 7 6.9300 -3.0632 -2.6094 11 6 6.3305 -2.6427 -3.8783 12 6 5.3067 -3.6601 -4.3118 13 1 5.1209 -4.5324 -3.7027 14 6 4.6066 -3.4766 -5.4853 15 7 4.8326 -2.4141 -6.2266 16 14 3.3371 -4.7373 -6.0223 17 1 3.2727 -5.8323 -5.0212 18 1 2.0070 -4.0857 -6.1300 19 1 3.7227 -5.2966 -7.3427 20 6 8.1276 -3.9070 -2.6091 21 6 9.3566 -3.0349 -2.6105 22 6 9.9255 -2.6254 -3.8071 23 6 11.0585 -1.8280 -3.7602 24 6 11.5767 -1.4657 -2.5310 25 7 11.0059 -1.8692 -1.4129 26 6 9.9274 -2.6283 -1.4196 27 6 2.2543 -1.0930 -0.0005 28 8 1.8806 -2.2523 -0.0006 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9249 2.1374 0.0004 33 1 4.5151 -2.4472 0.5140 34 1 5.5414 -0.9929 0.5133 35 1 5.3643 -0.8690 -1.9569 36 1 4.3380 -2.3234 -1.9562 37 1 5.8479 -1.6740 -3.7487 38 1 7.1077 -2.5627 -4.6384 39 1 4.3402 -2.2852 -7.0524 40 1 8.1282 -4.5372 -3.4984 41 1 8.1291 -4.5353 -1.7184 42 1 9.4987 -2.9244 -4.7530 43 1 11.5305 -1.4943 -4.6724 44 1 12.4588 -0.8443 -2.4857 45 1 9.4880 -2.9395 -0.4834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293328229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:47 Heat of formation + Delta-G solvation = 48.617341 kcal Electronic energy + Delta-G solvation = -30089.228268 eV Core-core repulsion = 25916.260829 eV Total energy + Delta-G solvation = -4172.967439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30846 -40.07701 -39.01875 -37.10508 -35.70962 -35.20285 -33.18630 -32.52783 -32.09552 -31.35197 -29.65149 -27.65857 -27.43724 -26.14553 -24.24697 -23.40599 -22.84115 -22.32436 -21.66932 -20.88451 -18.45443 -17.61595 -16.98024 -16.75014 -16.59374 -16.38209 -15.98210 -15.77089 -15.52654 -15.38159 -15.14004 -14.60478 -14.54150 -14.11194 -13.84516 -13.56846 -13.33632 -12.90841 -12.81107 -12.75836 -12.59875 -12.49327 -12.29933 -12.06619 -11.84362 -11.80084 -11.40374 -11.34608 -10.97086 -10.85238 -10.78703 -10.25669 -10.11829 -10.00756 -9.85468 -9.58465 -9.30716 -9.20559 -8.76341 -8.60245 -8.44060 -7.86678 -6.24654 -4.32178 1.30979 1.52418 1.84314 1.99596 2.80329 3.14783 3.19086 3.25905 3.28476 3.34950 3.78499 4.20253 4.30626 4.45660 4.67518 4.69463 4.99420 5.03009 5.05762 5.09065 5.17011 5.22286 5.26470 5.31837 5.34659 5.37634 5.45812 5.65343 5.76238 5.84974 5.90987 6.06017 6.09553 6.15864 6.32052 6.34439 6.40581 6.57047 6.61400 6.65834 6.94984 7.09194 7.39584 7.69604 7.70250 7.97502 8.16635 8.17832 8.20034 8.71037 8.87874 9.36593 10.82013 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.003959 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.144735 B = 7071.043340 C = 9647.669216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.564 5.564 3 C 0.246 3.754 4 N -0.278 5.278 5 N -0.446 5.446 6 C 0.178 3.822 7 C -0.152 4.152 8 C 0.528 3.472 9 O -0.573 6.573 10 N -0.589 5.589 11 C 0.238 3.762 12 C -0.539 4.539 13 H 0.063 0.937 14 C 0.066 3.934 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.161 3.839 21 C -0.145 4.145 22 C -0.059 4.059 23 C -0.179 4.179 24 C 0.089 3.911 25 N -0.492 5.492 26 C 0.117 3.883 27 C 0.642 3.358 28 O -0.550 6.550 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.150 0.850 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 8.050 7.599 11.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.294 5.294 3 C -0.053 4.053 4 N -0.099 5.099 5 N -0.267 5.267 6 C 0.058 3.942 7 C -0.193 4.193 8 C 0.316 3.684 9 O -0.455 6.455 10 N -0.318 5.318 11 C 0.119 3.881 12 C -0.577 4.577 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.723 3.277 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.037 3.963 21 C -0.149 4.149 22 C -0.085 4.085 23 C -0.199 4.199 24 C -0.069 4.069 25 N -0.200 5.200 26 C -0.041 4.041 27 C 0.342 3.658 28 O -0.423 6.423 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.245 0.755 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.167 0.833 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.542 7.609 8.750 11.608 hybrid contribution -1.982 -0.831 -1.684 2.730 sum -1.441 6.778 7.066 9.897 Atomic orbital electron populations 1.21777 0.74513 1.04726 1.03190 1.45935 1.08779 1.06798 1.67902 1.25863 0.85963 0.94638 0.98868 1.76968 1.18118 0.92473 1.22301 1.49064 1.06370 1.02842 1.68429 1.21254 0.82739 0.93092 0.97161 1.21962 0.98294 1.01488 0.97571 1.20142 0.84482 0.80340 0.83434 1.90593 1.64760 1.58714 1.31393 1.48216 1.26000 1.49493 1.08089 1.19469 0.93603 0.96023 0.79052 1.21526 1.21329 1.07972 1.06911 0.91852 1.24929 0.96977 0.95632 0.96151 1.69934 1.41641 1.27059 1.14243 0.86473 0.81154 0.81518 0.78602 1.19498 1.20831 1.20804 1.20139 0.80992 0.91252 1.03947 1.21440 0.98432 1.00840 0.94155 1.21641 0.93907 0.94332 0.98658 1.22101 0.97910 1.00428 0.99436 1.22701 0.98813 0.97280 0.88067 1.67717 1.10012 1.11058 1.31261 1.22858 0.90719 0.92319 0.98157 1.16806 0.82197 0.85095 0.81727 1.91102 1.77639 1.15159 1.58371 0.91116 0.89480 0.89420 0.75538 0.88104 0.88318 0.88606 0.87238 0.94432 0.94592 0.92565 0.89152 0.89541 0.84551 0.85108 0.83310 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.05 59.85 0.66 1.42 16 2 N -0.56 -6.72 3.14 -130.10 -0.41 -7.13 16 3 C 0.25 2.42 12.66 -89.11 -1.13 1.29 16 4 N -0.28 -3.85 12.53 29.87 0.37 -3.48 16 5 N -0.45 -7.33 3.63 -65.12 -0.24 -7.56 16 6 C 0.18 3.01 5.68 -4.04 -0.02 2.99 16 7 C -0.15 -2.87 4.58 -27.89 -0.13 -2.99 16 8 C 0.53 10.57 7.67 -10.99 -0.08 10.48 16 9 O -0.57 -11.80 15.12 5.55 0.08 -11.72 16 10 N -0.59 -11.86 2.44 -176.43 -0.43 -12.29 16 11 C 0.24 5.46 4.97 -5.19 -0.03 5.43 16 12 C -0.54 -13.74 9.28 -34.44 -0.32 -14.06 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -24.17 13.29 55.43 0.74 -23.44 16 16 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.16 2.83 5.56 -5.19 -0.03 2.80 16 21 C -0.15 -2.39 5.48 -104.48 -0.57 -2.96 16 22 C -0.06 -0.89 9.86 -39.28 -0.39 -1.28 16 23 C -0.18 -2.36 10.11 -39.44 -0.40 -2.76 16 24 C 0.09 1.21 11.18 -17.54 -0.20 1.02 16 25 N -0.49 -8.02 10.36 -13.25 -0.14 -8.16 16 26 C 0.12 1.95 10.86 -17.55 -0.19 1.76 16 27 C 0.64 10.92 8.60 -86.73 -0.75 10.18 16 28 O -0.55 -11.32 17.71 5.09 0.09 -11.23 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.23 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.10 1.77 8.07 -51.93 -0.42 1.35 16 34 H 0.10 1.57 8.10 -51.93 -0.42 1.14 16 35 H 0.10 1.79 7.40 -51.93 -0.38 1.41 16 36 H 0.11 2.32 8.00 -51.93 -0.42 1.91 16 37 H 0.04 0.91 6.44 -51.93 -0.33 0.58 16 38 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.09 1.54 8.03 -51.93 -0.42 1.13 16 41 H 0.09 1.49 7.37 -51.93 -0.38 1.11 16 42 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.16 2.68 7.62 -52.49 -0.40 2.28 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -34.27 393.88 -8.77 -43.04 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.09 Total: 5.42 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: -3.66 Total: 14.94 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.10 Total: -62.05 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.27 -8.77 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293328229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.662 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds