Wall clock time and date at job start Wed Apr 1 2020 03:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37361 * 125.82833 * 2 1 4 4 N 1.29406 * 108.82559 * 179.76944 * 3 2 1 5 5 N 1.40167 * 108.14166 * 0.38095 * 4 3 2 6 6 C 1.46500 * 126.35128 * 179.87330 * 5 4 3 7 7 C 1.52997 * 109.47306 * 269.69583 * 6 5 4 8 8 C 1.50699 * 109.46986 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99970 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00222 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99626 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.47198 * 269.99560 * 11 10 8 13 13 H 1.08001 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99899 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00183 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99986 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46884 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47511 * 119.99911 * 16 14 12 19 19 H 1.48501 * 109.47079 * 240.00351 * 16 14 12 20 20 C 1.46503 * 120.00342 * 179.97438 * 10 8 7 21 21 C 1.50695 * 109.47313 * 270.00350 * 20 10 8 22 22 C 1.38678 * 120.41675 * 270.25293 * 21 20 10 23 23 C 1.38627 * 118.41930 * 180.24221 * 22 21 20 24 24 C 1.38232 * 119.16085 * 359.75178 * 23 22 21 25 25 N 1.31857 * 120.76541 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.72235 * 0.02562 * 25 24 23 27 27 C 1.34817 * 125.83549 * 180.02562 * 2 1 3 28 28 O 1.21811 * 126.29874 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.47551 * 269.97611 * 1 2 3 30 30 H 1.09002 * 109.47233 * 29.98374 * 1 2 3 31 31 H 1.09003 * 109.47001 * 149.97530 * 1 2 3 32 32 H 1.08000 * 125.58973 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.46792 * 149.69253 * 6 5 4 34 34 H 1.09001 * 109.46647 * 29.69757 * 6 5 4 35 35 H 1.08999 * 109.47464 * 60.00081 * 7 6 5 36 36 H 1.09002 * 109.46917 * 299.99515 * 7 6 5 37 37 H 1.09000 * 109.46928 * 30.00295 * 11 10 8 38 38 H 1.09006 * 109.46774 * 149.99687 * 11 10 8 39 39 H 0.97003 * 120.00022 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46632 * 150.00159 * 20 10 8 41 41 H 1.08996 * 109.46728 * 30.00153 * 20 10 8 42 42 H 1.07994 * 120.78944 * 359.96926 * 22 21 20 43 43 H 1.07997 * 120.42083 * 179.72800 * 23 22 21 44 44 H 1.07999 * 119.61954 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.61237 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1137 0.0000 4 7 3.5065 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0005 6 6 4.7314 -1.5108 -0.0003 7 6 5.1480 -1.8054 -1.4427 8 6 6.3796 -2.6738 -1.4423 9 8 6.8756 -3.0223 -0.3918 10 7 6.9300 -3.0632 -2.6094 11 6 6.3305 -2.6427 -3.8783 12 6 5.3067 -3.6601 -4.3118 13 1 5.1209 -4.5324 -3.7027 14 6 4.6066 -3.4766 -5.4853 15 7 4.8326 -2.4141 -6.2266 16 14 3.3371 -4.7373 -6.0223 17 1 3.2727 -5.8323 -5.0212 18 1 2.0070 -4.0857 -6.1300 19 1 3.7227 -5.2966 -7.3427 20 6 8.1276 -3.9070 -2.6091 21 6 9.3566 -3.0349 -2.6105 22 6 9.9255 -2.6254 -3.8071 23 6 11.0585 -1.8280 -3.7602 24 6 11.5767 -1.4657 -2.5310 25 7 11.0059 -1.8692 -1.4129 26 6 9.9274 -2.6283 -1.4196 27 6 2.2543 -1.0930 -0.0005 28 8 1.8806 -2.2523 -0.0006 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9249 2.1374 0.0004 33 1 4.5151 -2.4472 0.5140 34 1 5.5414 -0.9929 0.5133 35 1 5.3643 -0.8690 -1.9569 36 1 4.3380 -2.3234 -1.9562 37 1 5.8479 -1.6740 -3.7487 38 1 7.1077 -2.5627 -4.6384 39 1 4.3402 -2.2852 -7.0524 40 1 8.1282 -4.5372 -3.4984 41 1 8.1291 -4.5353 -1.7184 42 1 9.4987 -2.9244 -4.7530 43 1 11.5305 -1.4943 -4.6724 44 1 12.4588 -0.8443 -2.4857 45 1 9.4880 -2.9395 -0.4834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293328229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:46 Heat of formation + Delta-G solvation = 28.139955 kcal Electronic energy + Delta-G solvation = -30090.116234 eV Core-core repulsion = 25916.260829 eV Total energy + Delta-G solvation = -4173.855405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.39320 -41.41247 -40.49897 -38.41536 -37.11793 -36.58929 -34.90231 -33.92770 -33.40476 -32.59889 -30.91436 -29.37982 -28.47138 -27.47660 -25.59700 -24.91027 -24.33704 -23.41688 -22.87832 -22.08158 -20.07864 -18.84176 -18.72425 -17.98647 -17.87242 -17.72407 -17.18393 -17.13258 -16.99318 -16.67367 -16.53505 -16.26125 -15.86904 -15.36999 -14.98582 -14.69552 -14.57900 -14.34555 -14.22558 -13.98480 -13.88394 -13.82411 -13.55944 -13.50984 -13.25526 -13.11409 -12.91814 -12.86897 -12.65545 -12.49822 -12.35718 -12.14797 -11.75464 -11.38716 -11.14069 -10.92164 -10.71452 -10.62837 -10.44753 -9.96609 -9.65558 -9.55563 -8.26337 -6.39708 0.12791 0.33734 0.74096 1.11251 1.34137 1.38329 1.48103 1.56345 1.63273 2.16066 2.31625 2.42083 2.95343 3.04461 3.45574 3.53646 3.66231 3.80314 3.88924 3.95043 3.98996 4.09729 4.11242 4.12071 4.28152 4.34734 4.48898 4.53032 4.63778 4.68215 4.72918 4.77081 4.79834 4.84496 4.88775 4.96622 5.11449 5.13259 5.22588 5.36692 5.58704 5.71796 5.73818 5.79399 5.99615 6.44759 6.63831 6.73812 6.94477 7.01656 7.18166 7.33647 8.79377 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.003959 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.144735 B = 7071.043340 C = 9647.669216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.559 5.559 3 C 0.279 3.721 4 N -0.317 5.317 5 N -0.458 5.458 6 C 0.189 3.811 7 C -0.137 4.137 8 C 0.524 3.476 9 O -0.579 6.579 10 N -0.590 5.590 11 C 0.257 3.743 12 C -0.546 4.546 13 H 0.050 0.950 14 C 0.027 3.973 15 N -0.915 5.915 16 Si 0.949 3.051 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.271 1.271 20 C 0.161 3.839 21 C -0.157 4.157 22 C -0.069 4.069 23 C -0.168 4.168 24 C 0.089 3.911 25 N -0.511 5.511 26 C 0.105 3.895 27 C 0.622 3.378 28 O -0.601 6.601 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.066 0.934 32 H 0.294 0.706 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.022 0.978 38 H 0.030 0.970 39 H 0.268 0.732 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.139 0.861 43 H 0.167 0.833 44 H 0.187 0.813 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 10.242 7.124 12.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.286 5.286 3 C -0.019 4.019 4 N -0.138 5.138 5 N -0.277 5.277 6 C 0.067 3.933 7 C -0.178 4.178 8 C 0.312 3.688 9 O -0.461 6.461 10 N -0.320 5.320 11 C 0.136 3.864 12 C -0.585 4.585 13 H 0.069 0.931 14 C -0.174 4.174 15 N -0.554 5.554 16 Si 0.775 3.225 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.196 1.196 20 C 0.038 3.962 21 C -0.160 4.160 22 C -0.095 4.095 23 C -0.187 4.187 24 C -0.068 4.068 25 N -0.220 5.220 26 C -0.052 4.052 27 C 0.321 3.679 28 O -0.478 6.478 29 H 0.108 0.892 30 H 0.151 0.849 31 H 0.084 0.916 32 H 0.309 0.691 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.157 0.843 43 H 0.185 0.815 44 H 0.203 0.797 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.456 9.832 8.285 12.866 hybrid contribution -1.962 -1.398 -1.525 2.851 sum -1.506 8.434 6.760 10.913 Atomic orbital electron populations 1.22175 0.71778 1.05938 1.04935 1.46174 1.10242 1.05856 1.66368 1.27198 0.84328 0.96131 0.94210 1.77000 1.20606 0.90412 1.25792 1.49012 1.05889 1.04269 1.68550 1.20991 0.83625 0.93139 0.95536 1.21790 0.96694 1.00663 0.98680 1.20337 0.84715 0.80396 0.83321 1.90582 1.65042 1.59001 1.31455 1.48183 1.26804 1.49796 1.07180 1.19066 0.92760 0.94674 0.79865 1.21687 1.21981 1.07976 1.06831 0.93143 1.25547 0.98478 0.97123 0.96284 1.69997 1.42558 1.28206 1.14663 0.85644 0.79106 0.79422 0.78376 1.20018 1.20719 1.19644 1.20197 0.80755 0.91278 1.03933 1.21255 0.98238 1.01599 0.94884 1.21809 0.94763 0.94812 0.98131 1.22470 0.96678 0.98738 1.00801 1.23354 0.99326 0.96633 0.87456 1.67727 1.10043 1.11440 1.32815 1.22700 0.91457 0.93235 0.97797 1.17196 0.82971 0.85643 0.82054 1.91039 1.78549 1.17500 1.60728 0.89162 0.84892 0.91555 0.69129 0.89496 0.87344 0.88696 0.90098 0.95957 0.95175 0.92269 0.88958 0.89674 0.84297 0.81546 0.79661 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 11.05 127.77 1.41 2.57 16 2 N -0.56 -12.36 3.14 -683.68 -2.15 -14.51 16 3 C 0.28 4.59 12.66 179.82 2.28 6.87 16 4 N -0.32 -8.41 12.53 -59.41 -0.74 -9.15 16 5 N -0.46 -15.39 3.63 -478.02 -1.73 -17.12 16 6 C 0.19 6.71 5.68 86.38 0.49 7.20 16 7 C -0.14 -5.46 4.58 29.85 0.14 -5.32 16 8 C 0.52 21.93 7.67 87.66 0.67 22.60 16 9 O -0.58 -24.79 15.12 -3.04 -0.05 -24.84 16 10 N -0.59 -24.68 2.44 -830.48 -2.03 -26.71 16 11 C 0.26 12.15 4.97 85.63 0.43 12.57 16 12 C -0.55 -28.57 9.28 25.60 0.24 -28.33 16 13 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 14 C 0.03 1.40 5.46 84.65 0.46 1.86 16 15 N -0.92 -49.94 13.29 21.45 0.28 -49.65 16 16 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 C 0.16 5.86 5.56 85.63 0.48 6.34 16 21 C -0.16 -5.20 5.48 -19.77 -0.11 -5.31 16 22 C -0.07 -2.01 9.86 22.47 0.22 -1.79 16 23 C -0.17 -3.99 10.11 22.36 0.23 -3.77 16 24 C 0.09 2.23 11.18 84.69 0.95 3.17 16 25 N -0.51 -16.20 10.36 -195.83 -2.03 -18.23 16 26 C 0.10 3.54 10.86 84.67 0.92 4.46 16 27 C 0.62 21.66 8.60 178.99 1.54 23.20 16 28 O -0.60 -26.10 17.71 -4.70 -0.08 -26.19 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.29 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.09 3.28 8.07 -2.39 -0.02 3.26 16 34 H 0.11 3.57 8.10 -2.39 -0.02 3.55 16 35 H 0.09 3.73 7.40 -2.39 -0.02 3.72 16 36 H 0.08 3.68 8.00 -2.39 -0.02 3.66 16 37 H 0.02 1.13 6.44 -2.39 -0.02 1.11 16 38 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 39 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.09 3.25 8.03 -2.39 -0.02 3.23 16 41 H 0.08 3.07 7.37 -2.39 -0.02 3.05 16 42 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 43 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 44 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.15 5.17 7.62 -2.91 -0.02 5.15 16 Total: -1.00 -78.24 393.88 4.84 -73.40 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.01 Total: 21.91 kcal Atomic # 6 Polarization: 35.99 SS G_CDS: 10.33 Total: 46.33 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -8.40 Total: -135.37 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.13 Total: -51.02 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -78.24 4.84 -73.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293328229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.540 kcal (2) G-P(sol) polarization free energy of solvation -78.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds