Wall clock time and date at job start Wed Apr 1 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98444 * 359.72203 * 4 3 2 6 6 C 1.38113 * 120.02040 * 179.76665 * 5 4 3 7 7 C 1.38858 * 119.97911 * 0.53161 * 6 5 4 8 8 N 1.39939 * 120.01766 * 179.69913 * 7 6 5 9 9 N 1.40091 * 120.00120 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00221 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00090 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99915 * 0.02562 * 10 9 8 13 13 C 1.40199 * 119.99971 * 180.02562 * 12 10 9 14 14 C 1.40403 * 125.97104 * 359.70809 * 13 12 10 15 15 C 1.35245 * 107.86360 * 179.86981 * 14 13 12 16 16 N 1.34961 * 107.85711 * 0.39445 * 15 14 13 17 17 C 1.46510 * 125.97212 * 179.75363 * 16 15 14 18 18 C 1.50703 * 109.46784 * 124.97319 * 17 16 15 19 19 H 1.07994 * 120.00598 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99618 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00102 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99879 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47195 * 120.00059 * 22 20 18 25 25 H 1.48501 * 109.46742 * 240.00003 * 22 20 18 26 26 N 1.31201 * 125.97018 * 180.02562 * 13 12 10 27 27 C 1.38868 * 119.96248 * 359.72050 * 7 6 5 28 28 C 1.38103 * 119.97978 * 0.02562 * 27 7 6 29 29 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 30 30 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 31 31 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 33 33 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 34 34 H 1.07993 * 119.98794 * 0.02562 * 5 4 3 35 35 H 1.07998 * 120.00775 * 180.25014 * 6 5 4 36 36 H 0.97005 * 119.99779 * 180.02562 * 8 7 6 37 37 H 0.97005 * 120.00101 * 359.97438 * 9 8 7 38 38 H 0.96991 * 119.99795 * 359.97438 * 12 10 9 39 39 H 1.08001 * 126.06612 * 0.02562 * 14 13 12 40 40 H 1.07998 * 126.06614 * 180.15028 * 15 14 13 41 41 H 1.09001 * 109.46708 * 244.97051 * 17 16 15 42 42 H 1.08997 * 109.46926 * 4.97590 * 17 16 15 43 43 H 0.96999 * 120.00149 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.00693 * 179.97438 * 27 7 6 45 45 H 1.08001 * 119.98708 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0069 6 6 5.5685 0.6055 0.0026 7 6 6.0995 1.8885 0.0030 8 7 7.4869 2.0719 0.0050 9 7 8.3403 0.9610 0.0060 10 6 9.6764 1.1376 0.0074 11 8 10.4172 0.1734 0.0087 12 7 10.1915 2.3831 0.0084 13 6 11.5814 2.5669 0.0093 14 6 12.5479 1.5485 0.0151 15 6 13.7672 2.1337 0.0111 16 7 13.5845 3.4708 0.0118 17 6 14.6428 4.4840 0.0135 18 6 14.4434 5.4205 -1.1503 19 1 13.6120 5.2753 -1.8240 20 6 15.3226 6.4627 -1.3549 21 7 16.3349 6.6399 -0.5342 22 14 15.0751 7.6239 -2.7970 23 1 13.8720 7.2118 -3.5636 24 1 14.8907 9.0081 -2.2920 25 1 16.2664 7.5746 -3.6823 26 7 12.2062 3.7206 0.0108 27 6 5.2532 2.9895 0.0020 28 6 3.8842 2.8075 0.0010 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.7859 -0.5724 0.0110 35 1 6.2259 -0.2513 0.0034 36 1 7.8576 2.9683 0.0057 37 1 7.9696 0.0646 0.0057 38 1 9.6006 3.1523 0.0077 39 1 12.3524 0.4863 0.0193 40 1 14.7182 1.6217 0.0115 41 1 14.6037 5.0487 0.9451 42 1 15.6133 3.9958 -0.0751 43 1 16.9532 7.3733 -0.6779 44 1 5.6655 3.9877 0.0027 45 1 3.2258 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297013897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:14 Heat of formation + Delta-G solvation = 94.237688 kcal Electronic energy + Delta-G solvation = -27948.587737 eV Core-core repulsion = 23777.598545 eV Total energy + Delta-G solvation = -4170.989192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97567 -40.46470 -39.73652 -38.33942 -36.05183 -34.86195 -33.36090 -32.46269 -31.68029 -31.14955 -30.62088 -29.35364 -27.63483 -26.69647 -24.60525 -23.53318 -22.74188 -22.08125 -21.84162 -20.62138 -19.71603 -18.83617 -18.61569 -18.13882 -16.64719 -16.60801 -16.44555 -16.15127 -15.89882 -15.75412 -15.23022 -14.78577 -14.59095 -14.30138 -14.06629 -13.89901 -13.84842 -13.76888 -13.18904 -13.15129 -12.86518 -12.72007 -12.39514 -12.29067 -12.10108 -11.92509 -11.74375 -11.11837 -11.11579 -10.95147 -10.91434 -10.54549 -10.33069 -10.27110 -9.82944 -9.52864 -9.41733 -9.22159 -8.65902 -8.19494 -7.55774 -7.29813 -6.26501 -4.31600 0.96284 1.23045 1.66387 2.52309 2.56162 2.90945 2.98007 3.20841 3.28538 3.34822 3.46763 3.72361 3.77920 4.29740 4.35539 4.43701 4.48146 4.59008 4.62974 4.78292 4.87413 4.97878 5.08791 5.13678 5.29788 5.33500 5.47368 5.55359 5.59469 5.65691 5.70553 5.91650 6.02203 6.05959 6.18760 6.30679 6.44686 6.48178 6.81983 7.00728 7.05691 7.11930 7.21696 7.41663 7.67518 7.80586 7.93352 8.01387 8.34271 8.58920 8.77984 9.34271 10.82266 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.001696 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.694774 B =16506.539966 C =17779.732605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.075 3.925 5 C -0.155 4.155 6 C -0.156 4.156 7 C 0.187 3.813 8 N -0.553 5.553 9 N -0.529 5.529 10 C 0.722 3.278 11 O -0.553 6.553 12 N -0.639 5.639 13 C 0.272 3.728 14 C -0.286 4.286 15 C 0.054 3.946 16 N -0.318 5.318 17 C 0.258 3.742 18 C -0.529 4.529 19 H 0.069 0.931 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 N -0.304 5.304 27 C -0.146 4.146 28 C -0.097 4.097 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.424 0.576 37 H 0.434 0.566 38 H 0.402 0.598 39 H 0.161 0.839 40 H 0.169 0.831 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.267 0.733 44 H 0.135 0.865 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.428 -13.086 2.294 30.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.028 3.972 5 C -0.174 4.174 6 C -0.179 4.179 7 C 0.086 3.914 8 N -0.286 5.286 9 N -0.285 5.285 10 C 0.421 3.579 11 O -0.425 6.425 12 N -0.291 5.291 13 C 0.018 3.982 14 C -0.317 4.317 15 C -0.097 4.097 16 N -0.100 5.100 17 C 0.140 3.860 18 C -0.567 4.567 19 H 0.088 0.912 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 N -0.135 5.135 27 C -0.170 4.170 28 C -0.116 4.116 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.266 0.734 37 H 0.280 0.720 38 H 0.238 0.762 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.152 0.848 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.671 -12.224 2.337 29.432 hybrid contribution -0.101 0.000 -0.745 0.752 sum -26.773 -12.225 1.592 29.475 Atomic orbital electron populations 1.21772 0.92880 1.02789 1.03506 1.22727 0.95779 0.82278 1.01205 1.86064 1.18964 1.28836 1.89555 1.18760 0.82329 0.93943 1.02120 1.20967 0.93282 0.98141 1.05024 1.20227 0.94877 0.95042 1.07797 1.17594 0.80948 0.94388 0.98490 1.43335 0.99097 1.00687 1.85479 1.44403 0.99783 1.02818 1.81491 1.15350 0.80456 0.83533 0.78574 1.90978 1.54501 1.39384 1.57622 1.41302 1.04367 1.06915 1.76471 1.18740 0.82581 0.93264 1.03635 1.21485 0.89559 1.00610 1.20074 1.22564 0.99785 0.85046 1.02263 1.49080 1.03623 1.05575 1.51698 1.19770 0.81679 0.85193 0.99328 1.21298 1.12479 1.11860 1.11089 0.91237 1.24944 0.94696 0.97394 0.97021 1.69924 1.14799 1.31500 1.37077 0.86276 0.78262 0.80280 0.81706 1.19584 1.20687 1.20753 1.77318 0.89204 1.18864 1.28143 1.20302 0.91959 0.97538 1.07174 1.20145 0.94068 0.94996 1.02382 0.91547 0.91538 0.90475 0.92220 0.92227 0.85404 0.86081 0.73365 0.71987 0.76225 0.82192 0.81364 0.93667 0.92449 0.92360 0.84754 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.28 37.16 0.38 -0.25 16 2 C 0.06 0.31 5.46 37.16 0.20 0.51 16 3 O -0.32 -2.75 10.14 -19.72 -0.20 -2.95 16 4 C 0.07 0.65 6.69 -39.24 -0.26 0.39 16 5 C -0.15 -1.21 9.03 -39.45 -0.36 -1.56 16 6 C -0.16 -1.26 9.48 -39.40 -0.37 -1.64 16 7 C 0.19 1.59 6.72 -83.69 -0.56 1.02 16 8 N -0.55 -4.80 6.46 32.45 0.21 -4.60 16 9 N -0.53 -5.45 6.22 27.64 0.17 -5.28 16 10 C 0.72 10.33 8.64 -86.92 -0.75 9.58 16 11 O -0.55 -9.59 14.31 5.28 0.08 -9.52 16 12 N -0.64 -9.67 5.41 -15.50 -0.08 -9.76 16 13 C 0.27 5.35 8.11 -154.36 -1.25 4.10 16 14 C -0.29 -5.59 9.61 -39.83 -0.38 -5.97 16 15 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 16 N -0.32 -7.27 3.67 -62.55 -0.23 -7.50 16 17 C 0.26 6.46 6.26 -5.19 -0.03 6.43 16 18 C -0.53 -14.56 9.24 -34.44 -0.32 -14.88 16 19 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 22 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 N -0.30 -6.86 12.42 31.44 0.39 -6.47 16 27 C -0.15 -1.13 9.89 -39.40 -0.39 -1.52 16 28 C -0.10 -0.79 9.98 -39.46 -0.39 -1.18 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 33 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 34 H 0.13 0.75 6.29 -52.49 -0.33 0.42 16 35 H 0.12 0.81 6.20 -52.49 -0.33 0.48 16 36 H 0.42 3.22 6.72 -182.60 -1.23 2.00 16 37 H 0.43 3.78 6.71 -182.60 -1.22 2.56 16 38 H 0.40 4.93 6.74 -40.82 -0.28 4.66 16 39 H 0.16 3.04 5.91 -52.49 -0.31 2.73 16 40 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -33.43 383.86 -10.36 -43.79 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.41 Total: 7.19 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -4.78 Total: -2.51 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 1.20 Total: -57.96 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.12 Total: -12.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.43 -10.36 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297013897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.025 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds