Wall clock time and date at job start Wed Apr 1 2020 03:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98444 * 359.72203 * 4 3 2 6 6 C 1.38113 * 120.02040 * 179.76665 * 5 4 3 7 7 C 1.38858 * 119.97911 * 0.53161 * 6 5 4 8 8 N 1.39939 * 120.01766 * 179.69913 * 7 6 5 9 9 N 1.40091 * 120.00120 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00221 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00090 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99915 * 0.02562 * 10 9 8 13 13 C 1.40199 * 119.99971 * 180.02562 * 12 10 9 14 14 C 1.40403 * 125.97104 * 359.70809 * 13 12 10 15 15 C 1.35245 * 107.86360 * 179.86981 * 14 13 12 16 16 N 1.34961 * 107.85711 * 0.39445 * 15 14 13 17 17 C 1.46510 * 125.97212 * 179.75363 * 16 15 14 18 18 C 1.50703 * 109.46784 * 124.97319 * 17 16 15 19 19 H 1.07994 * 120.00598 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99618 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00102 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99879 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47195 * 120.00059 * 22 20 18 25 25 H 1.48501 * 109.46742 * 240.00003 * 22 20 18 26 26 N 1.31201 * 125.97018 * 180.02562 * 13 12 10 27 27 C 1.38868 * 119.96248 * 359.72050 * 7 6 5 28 28 C 1.38103 * 119.97978 * 0.02562 * 27 7 6 29 29 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 30 30 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 31 31 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 33 33 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 34 34 H 1.07993 * 119.98794 * 0.02562 * 5 4 3 35 35 H 1.07998 * 120.00775 * 180.25014 * 6 5 4 36 36 H 0.97005 * 119.99779 * 180.02562 * 8 7 6 37 37 H 0.97005 * 120.00101 * 359.97438 * 9 8 7 38 38 H 0.96991 * 119.99795 * 359.97438 * 12 10 9 39 39 H 1.08001 * 126.06612 * 0.02562 * 14 13 12 40 40 H 1.07998 * 126.06614 * 180.15028 * 15 14 13 41 41 H 1.09001 * 109.46708 * 244.97051 * 17 16 15 42 42 H 1.08997 * 109.46926 * 4.97590 * 17 16 15 43 43 H 0.96999 * 120.00149 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.00693 * 179.97438 * 27 7 6 45 45 H 1.08001 * 119.98708 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0069 6 6 5.5685 0.6055 0.0026 7 6 6.0995 1.8885 0.0030 8 7 7.4869 2.0719 0.0050 9 7 8.3403 0.9610 0.0060 10 6 9.6764 1.1376 0.0074 11 8 10.4172 0.1734 0.0087 12 7 10.1915 2.3831 0.0084 13 6 11.5814 2.5669 0.0093 14 6 12.5479 1.5485 0.0151 15 6 13.7672 2.1337 0.0111 16 7 13.5845 3.4708 0.0118 17 6 14.6428 4.4840 0.0135 18 6 14.4434 5.4205 -1.1503 19 1 13.6120 5.2753 -1.8240 20 6 15.3226 6.4627 -1.3549 21 7 16.3349 6.6399 -0.5342 22 14 15.0751 7.6239 -2.7970 23 1 13.8720 7.2118 -3.5636 24 1 14.8907 9.0081 -2.2920 25 1 16.2664 7.5746 -3.6823 26 7 12.2062 3.7206 0.0108 27 6 5.2532 2.9895 0.0020 28 6 3.8842 2.8075 0.0010 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.7859 -0.5724 0.0110 35 1 6.2259 -0.2513 0.0034 36 1 7.8576 2.9683 0.0057 37 1 7.9696 0.0646 0.0057 38 1 9.6006 3.1523 0.0077 39 1 12.3524 0.4863 0.0193 40 1 14.7182 1.6217 0.0115 41 1 14.6037 5.0487 0.9451 42 1 15.6133 3.9958 -0.0751 43 1 16.9532 7.3733 -0.6779 44 1 5.6655 3.9877 0.0027 45 1 3.2258 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297013897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:12 Heat of formation + Delta-G solvation = 73.414349 kcal Electronic energy + Delta-G solvation = -27949.490704 eV Core-core repulsion = 23777.598545 eV Total energy + Delta-G solvation = -4171.892160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.33098 -41.31853 -40.81602 -39.05069 -36.88883 -36.30915 -35.23558 -33.18466 -32.58692 -32.25853 -31.49851 -30.94730 -28.58959 -28.27874 -25.39489 -24.93139 -23.77262 -23.03524 -22.61877 -22.03501 -21.05619 -19.74122 -19.52355 -18.89592 -18.64974 -18.01321 -17.18629 -16.96445 -16.90165 -16.75453 -16.55848 -16.19374 -15.84291 -15.58763 -15.19659 -14.63292 -14.52641 -14.47019 -14.33692 -14.26592 -13.83345 -13.82816 -13.64934 -13.61063 -13.14162 -12.95234 -12.73705 -12.55780 -12.44439 -12.30372 -12.11584 -11.75500 -11.65144 -11.52717 -11.44897 -11.29759 -10.71840 -10.08523 -9.94888 -9.76254 -9.12745 -8.32722 -8.03793 -6.46366 0.36773 0.58314 0.75953 1.04944 1.31292 1.37781 1.39520 1.52328 1.61005 2.24440 2.29301 2.38251 2.41965 2.85639 2.99543 3.60455 3.81409 3.92741 4.01593 4.11219 4.17700 4.25481 4.29623 4.42967 4.45206 4.61182 4.72000 4.79773 4.90337 4.93008 4.98095 4.98615 5.01083 5.04707 5.11714 5.24233 5.30868 5.34603 5.43775 5.57735 5.70912 5.79234 5.85778 5.98448 6.28454 6.37522 6.60150 6.65079 6.82352 7.09533 7.23771 7.26208 8.75265 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.001696 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.694774 B =16506.539966 C =17779.732605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.337 6.337 4 C 0.063 3.937 5 C -0.159 4.159 6 C -0.162 4.162 7 C 0.174 3.826 8 N -0.551 5.551 9 N -0.510 5.510 10 C 0.723 3.277 11 O -0.584 6.584 12 N -0.632 5.632 13 C 0.281 3.719 14 C -0.292 4.292 15 C 0.059 3.941 16 N -0.343 5.343 17 C 0.272 3.728 18 C -0.547 4.547 19 H 0.053 0.947 20 C 0.020 3.980 21 N -0.920 5.920 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.273 1.273 25 H -0.271 1.271 26 N -0.344 5.344 27 C -0.144 4.144 28 C -0.109 4.109 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.429 0.571 37 H 0.444 0.556 38 H 0.415 0.585 39 H 0.169 0.831 40 H 0.203 0.797 41 H 0.022 0.978 42 H 0.060 0.940 43 H 0.272 0.728 44 H 0.152 0.848 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.754 -13.699 1.697 31.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.252 6.252 4 C 0.017 3.983 5 C -0.178 4.178 6 C -0.185 4.185 7 C 0.073 3.927 8 N -0.286 5.286 9 N -0.264 5.264 10 C 0.421 3.579 11 O -0.458 6.458 12 N -0.286 5.286 13 C 0.026 3.974 14 C -0.323 4.323 15 C -0.090 4.090 16 N -0.125 5.125 17 C 0.153 3.847 18 C -0.585 4.585 19 H 0.071 0.929 20 C -0.181 4.181 21 N -0.559 5.559 22 Si 0.796 3.204 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.196 1.196 26 N -0.174 5.174 27 C -0.167 4.167 28 C -0.128 4.128 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.272 0.728 37 H 0.292 0.708 38 H 0.253 0.747 39 H 0.186 0.814 40 H 0.219 0.781 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.170 0.830 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -28.075 -12.856 1.747 30.928 hybrid contribution 0.113 0.083 -0.524 0.542 sum -27.962 -12.773 1.223 30.765 Atomic orbital electron populations 1.21799 0.91925 1.03951 1.03065 1.22968 0.96611 0.81230 1.01967 1.86051 1.18937 1.30633 1.89554 1.19012 0.82680 0.94485 1.02094 1.21170 0.93148 0.98851 1.04652 1.20453 0.95298 0.95382 1.07370 1.17732 0.80627 0.94939 0.99365 1.43337 0.98980 1.00207 1.86058 1.44090 0.98758 1.03926 1.79645 1.15346 0.81375 0.82671 0.78481 1.90948 1.55817 1.40093 1.58989 1.41251 1.02855 1.08029 1.76430 1.19017 0.84431 0.92567 1.01406 1.21679 0.89556 1.00923 1.20141 1.23172 1.01469 0.83884 1.00448 1.48830 1.03503 1.06158 1.53989 1.19359 0.82565 0.85348 0.97408 1.21440 1.12251 1.13090 1.11755 0.92896 1.25717 0.94277 0.98658 0.99441 1.69997 1.15349 1.32177 1.38384 0.85306 0.78221 0.78304 0.78614 1.19922 1.19881 1.19615 1.77238 0.89355 1.20458 1.30396 1.20512 0.91753 0.98263 1.06199 1.20373 0.94474 0.95390 1.02567 0.91963 0.91983 0.88516 0.91439 0.91399 0.83696 0.84885 0.72777 0.70803 0.74678 0.81400 0.78061 0.95965 0.92248 0.91862 0.83038 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 71.98 0.74 -0.32 16 2 C 0.05 0.46 5.46 71.98 0.39 0.86 16 3 O -0.34 -5.49 10.14 -93.49 -0.95 -6.44 16 4 C 0.06 1.04 6.69 22.49 0.15 1.19 16 5 C -0.16 -2.23 9.03 22.35 0.20 -2.03 16 6 C -0.16 -2.34 9.48 22.39 0.21 -2.12 16 7 C 0.17 2.66 6.72 38.15 0.26 2.91 16 8 N -0.55 -8.62 6.46 -51.26 -0.33 -8.96 16 9 N -0.51 -9.64 6.22 -184.74 -1.15 -10.79 16 10 C 0.72 19.75 8.64 179.05 1.55 21.30 16 11 O -0.58 -19.64 14.31 -4.01 -0.06 -19.70 16 12 N -0.63 -18.55 5.41 -321.22 -1.74 -20.29 16 13 C 0.28 10.98 8.11 133.31 1.08 12.06 16 14 C -0.29 -11.19 9.61 22.11 0.21 -10.98 16 15 C 0.06 2.27 11.44 83.52 0.96 3.23 16 16 N -0.34 -15.83 3.67 -351.82 -1.29 -17.12 16 17 C 0.27 13.92 6.26 85.63 0.54 14.46 16 18 C -0.55 -30.56 9.24 25.60 0.24 -30.33 16 19 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 20 C 0.02 1.07 5.46 84.66 0.46 1.53 16 21 N -0.92 -51.70 13.29 21.45 0.28 -51.41 16 22 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 N -0.34 -15.62 12.42 -54.44 -0.68 -16.30 16 27 C -0.14 -2.01 9.89 22.39 0.22 -1.79 16 28 C -0.11 -1.65 9.98 22.35 0.22 -1.43 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 0.55 7.67 -2.39 -0.02 0.53 16 33 H 0.07 0.54 7.65 -2.39 -0.02 0.53 16 34 H 0.15 1.42 6.29 -2.91 -0.02 1.40 16 35 H 0.13 1.50 6.20 -2.91 -0.02 1.48 16 36 H 0.43 5.82 6.72 -213.32 -1.43 4.38 16 37 H 0.44 6.88 6.71 -213.32 -1.43 5.45 16 38 H 0.42 9.75 6.74 -92.72 -0.63 9.13 16 39 H 0.17 6.22 5.91 -2.91 -0.02 6.20 16 40 H 0.20 6.09 8.06 -2.91 -0.02 6.07 16 41 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 43 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -71.45 383.86 1.13 -70.32 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -2.42 Total: 26.86 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 7.43 Total: 8.53 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -4.90 Total: -124.86 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -1.01 Total: -26.13 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -71.45 1.13 -70.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297013897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.732 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds