Wall clock time and date at job start Wed Apr 1 2020 03:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35334 * 117.00243 * 2 1 4 4 C 1.40585 * 121.06761 * 270.01941 * 3 2 1 5 5 C 1.41472 * 133.70317 * 0.02562 * 4 3 2 6 6 N 1.30152 * 108.43526 * 179.97438 * 5 4 3 7 7 N 1.39958 * 109.72957 * 359.97438 * 6 5 4 8 8 C 1.46500 * 125.83487 * 180.26830 * 7 6 5 9 9 C 1.36679 * 108.32434 * 0.02562 * 7 6 5 10 10 N 1.33102 * 133.15337 * 180.02562 * 9 7 6 11 11 C 1.31176 * 122.04004 * 179.97438 * 10 9 7 12 12 C 1.40118 * 121.36360 * 0.02562 * 11 10 9 13 13 C 1.47324 * 120.45136 * 180.02562 * 12 11 10 14 14 O 1.21617 * 120.00000 * 227.96773 * 13 12 11 15 15 N 1.34776 * 120.00022 * 47.96311 * 13 12 11 16 16 C 1.46968 * 120.59308 * 5.00388 * 15 13 12 17 17 C 1.53818 * 108.39270 * 124.75887 * 16 15 13 18 18 N 1.46970 * 108.57961 * 49.64233 * 17 16 15 19 19 C 1.36932 * 120.59365 * 124.62293 * 18 17 16 20 20 H 1.08005 * 119.99798 * 204.01885 * 19 18 17 21 21 C 1.38808 * 120.00270 * 24.01636 * 19 18 17 22 22 N 1.31614 * 120.00191 * 218.43423 * 21 19 18 23 23 Si 1.86800 * 119.99846 * 38.43938 * 21 19 18 24 24 H 1.48495 * 109.47381 * 95.62952 * 23 21 19 25 25 H 1.48502 * 109.46998 * 215.63046 * 23 21 19 26 26 H 1.48496 * 109.47142 * 335.62715 * 23 21 19 27 27 C 1.46967 * 118.81001 * 304.64267 * 18 17 16 28 28 C 1.46970 * 120.59559 * 185.28962 * 15 13 12 29 29 H 1.08998 * 109.47124 * 300.00110 * 1 2 3 30 30 H 1.09005 * 109.46447 * 59.99870 * 1 2 3 31 31 H 1.08997 * 109.47173 * 179.97438 * 1 2 3 32 32 H 1.07998 * 125.78028 * 359.97438 * 5 4 3 33 33 H 1.08999 * 109.47052 * 269.69073 * 8 7 6 34 34 H 1.09002 * 109.47260 * 29.69442 * 8 7 6 35 35 H 1.09003 * 109.46861 * 149.69983 * 8 7 6 36 36 H 1.08001 * 119.31851 * 179.97438 * 11 10 9 37 37 H 1.08991 * 109.61341 * 244.54040 * 16 15 13 38 38 H 1.08997 * 109.60648 * 5.05983 * 16 15 13 39 39 H 1.08993 * 109.74308 * 289.84841 * 17 16 15 40 40 H 1.09004 * 109.53091 * 169.30309 * 17 16 15 41 41 H 0.97005 * 120.00209 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.60841 * 295.48225 * 27 18 17 43 43 H 1.08999 * 109.74888 * 175.05388 * 27 18 17 44 44 H 1.09004 * 109.60673 * 354.94567 * 28 15 13 45 45 H 1.08999 * 109.60665 * 115.45606 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2058 0.0000 4 6 2.3725 1.8524 -1.2042 5 6 2.2030 1.5217 -2.5692 6 7 2.6943 2.4871 -3.2907 7 7 3.2043 3.4882 -2.4561 8 6 3.8331 4.7354 -2.8981 9 6 3.0107 3.1057 -1.1583 10 7 3.2996 3.6727 0.0107 11 6 3.0080 3.0987 1.1536 12 6 2.3734 1.8504 1.2017 13 6 2.0546 1.2243 2.4966 14 8 2.3397 0.0588 2.6951 15 7 1.4472 1.9432 3.4614 16 6 0.9986 3.3180 3.1994 17 6 -0.5003 3.4111 3.5321 18 7 -0.7203 2.8364 4.8668 19 6 -1.3366 3.5672 5.8472 20 1 -1.1627 3.3311 6.8867 21 6 -2.1848 4.6113 5.5052 22 7 -2.1878 5.7175 6.2184 23 14 -3.3223 4.4465 4.0326 24 1 -4.6613 3.9955 4.4895 25 1 -3.4477 5.7616 3.3544 26 1 -2.7621 3.4514 3.0834 27 6 -0.2665 1.4637 5.1305 28 6 1.2273 1.3686 4.7961 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7436 0.6208 -2.9483 33 1 4.9068 4.5825 -3.0066 34 1 3.4101 5.0357 -3.8567 35 1 3.6501 5.5160 -2.1596 36 1 3.2630 3.5983 2.0765 37 1 1.5589 4.0114 3.8263 38 1 1.1574 3.5606 2.1487 39 1 -1.0766 2.8532 2.7941 40 1 -0.8103 4.4561 3.5282 41 1 -2.7803 6.4473 5.9792 42 1 -0.8262 0.7671 4.5062 43 1 -0.4224 1.2197 6.1813 44 1 1.5372 0.3235 4.8000 45 1 1.8036 1.9265 5.5340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332585483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:36 Heat of formation + Delta-G solvation = 93.704119 kcal Electronic energy + Delta-G solvation = -31290.972081 eV Core-core repulsion = 27119.959751 eV Total energy + Delta-G solvation = -4171.012329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17164 -40.18514 -38.83741 -37.75120 -36.96607 -34.02949 -33.89024 -32.04974 -31.31455 -30.86236 -30.21151 -27.72511 -27.23910 -26.98527 -24.30799 -24.18546 -23.16904 -23.04057 -21.19991 -20.95576 -19.19150 -18.50379 -18.16613 -17.40254 -16.64193 -16.46323 -15.98087 -15.79199 -15.48015 -15.31118 -15.05651 -14.80335 -14.54888 -14.38723 -14.34557 -13.80046 -13.68249 -13.58732 -13.27026 -12.97137 -12.83429 -12.63362 -12.47478 -12.22161 -12.09800 -11.91925 -11.48904 -11.11881 -10.88708 -10.63981 -10.51562 -10.45998 -10.39211 -10.25672 -10.08666 -9.55294 -9.52496 -9.20247 -8.81047 -8.59137 -8.27441 -7.12663 -6.16308 -3.32256 0.28085 0.65561 1.79031 2.10316 2.75984 3.05923 3.16843 3.30035 3.42507 3.47763 3.54954 3.80453 4.04013 4.35112 4.43411 4.45960 4.72279 4.77095 4.82811 4.90603 4.98280 5.01043 5.06715 5.13052 5.17553 5.17782 5.44387 5.47649 5.51546 5.54270 5.72835 5.78307 5.82652 5.96244 5.99884 6.05761 6.17985 6.41983 6.43732 6.50692 6.67668 6.84621 6.98929 7.09524 7.52497 7.64235 7.79218 8.17015 8.33743 8.80952 9.60483 9.99348 10.97608 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003669 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.873152 B = 7629.189763 C = 8346.912995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.320 6.320 3 C 0.274 3.726 4 C -0.256 4.256 5 C 0.100 3.900 6 N -0.245 5.245 7 N -0.387 5.387 8 C 0.111 3.889 9 C 0.335 3.665 10 N -0.507 5.507 11 C 0.222 3.778 12 C -0.243 4.243 13 C 0.567 3.433 14 O -0.531 6.531 15 N -0.594 5.594 16 C 0.080 3.920 17 C 0.135 3.865 18 N -0.598 5.598 19 C -0.276 4.276 20 H 0.085 0.915 21 C 0.041 3.959 22 N -0.874 5.874 23 Si 0.829 3.171 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.259 1.259 27 C 0.133 3.867 28 C 0.097 3.903 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.200 0.800 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.179 0.821 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.263 0.737 42 H 0.026 0.974 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.713 -5.273 -16.438 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.235 6.235 3 C 0.218 3.782 4 C -0.266 4.266 5 C -0.096 4.096 6 N -0.058 5.058 7 N -0.176 5.176 8 C -0.030 4.030 9 C 0.095 3.905 10 N -0.222 5.222 11 C 0.051 3.949 12 C -0.251 4.251 13 C 0.353 3.647 14 O -0.408 6.408 15 N -0.326 5.326 16 C -0.044 4.044 17 C 0.008 3.992 18 N -0.322 5.322 19 C -0.403 4.403 20 H 0.103 0.897 21 C -0.161 4.161 22 N -0.514 5.514 23 Si 0.656 3.344 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.184 1.184 27 C 0.007 3.993 28 C -0.026 4.026 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.216 0.784 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.196 0.804 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.573 -4.481 -17.640 21.049 hybrid contribution -1.546 -0.686 -0.031 1.691 sum 9.027 -5.167 -17.671 20.505 Atomic orbital electron populations 1.23109 0.76501 1.04337 1.01314 1.85845 1.20836 1.22908 1.93951 1.18353 0.88429 0.82659 0.88780 1.19710 1.13428 0.98571 0.94919 1.23815 0.97991 0.98375 0.89431 1.76884 1.13760 0.97618 1.17534 1.48269 1.51178 1.17989 1.00161 1.21880 0.97667 0.81162 1.02251 1.19028 0.94020 0.90241 0.87180 1.66708 1.23752 1.36102 0.95589 1.22908 0.88206 0.88843 0.94953 1.21085 1.11197 0.98344 0.94520 1.17641 0.78379 0.85803 0.82870 1.90786 1.53923 1.15680 1.80460 1.47972 1.57130 1.15240 1.12281 1.22796 0.99239 0.82073 1.00309 1.21731 0.91161 0.98848 0.87498 1.44296 1.67625 1.10361 1.09869 1.18776 1.22479 1.10876 0.88192 0.89744 1.25130 0.99050 0.95347 0.96535 1.70142 1.36773 1.02585 1.41864 0.87698 0.84159 0.77653 0.84921 1.21967 1.22023 1.18421 1.21327 0.91178 0.86774 1.00033 1.22259 0.99153 0.99262 0.81974 0.92772 0.92983 0.87742 0.78372 0.90804 0.89185 0.88810 0.80447 0.90309 0.90957 0.95211 0.90407 0.92674 0.95623 0.90585 0.89460 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.13 101.05 1.12 1.57 16 2 O -0.32 -4.45 9.58 -25.43 -0.24 -4.70 16 3 C 0.27 3.87 5.81 -37.92 -0.22 3.65 16 4 C -0.26 -3.33 6.14 -106.85 -0.66 -3.99 16 5 C 0.10 1.08 12.06 -17.03 -0.21 0.87 16 6 N -0.24 -2.85 12.44 30.85 0.38 -2.47 16 7 N -0.39 -4.50 4.05 -67.22 -0.27 -4.77 16 8 C 0.11 0.84 11.47 59.85 0.69 1.53 16 9 C 0.34 4.44 7.98 -156.03 -1.24 3.20 16 10 N -0.51 -6.71 10.36 -12.09 -0.13 -6.83 16 11 C 0.22 2.86 8.63 -17.13 -0.15 2.71 16 12 C -0.24 -3.55 4.89 -104.72 -0.51 -4.06 16 13 C 0.57 9.36 7.00 -12.57 -0.09 9.27 16 14 O -0.53 -10.25 15.97 -2.47 -0.04 -10.29 16 15 N -0.59 -9.65 2.94 -173.51 -0.51 -10.16 16 16 C 0.08 1.28 5.46 -3.36 -0.02 1.27 16 17 C 0.13 2.68 4.56 -3.36 -0.02 2.66 16 18 N -0.60 -13.16 2.75 -171.76 -0.47 -13.63 16 19 C -0.28 -7.17 9.86 -15.06 -0.15 -7.32 16 20 H 0.08 2.33 8.04 -52.48 -0.42 1.91 16 21 C 0.04 1.11 4.80 -17.43 -0.08 1.02 16 22 N -0.87 -25.08 13.97 55.49 0.78 -24.30 16 23 Si 0.83 20.03 26.39 -169.99 -4.49 15.55 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.26 -5.94 5.01 56.52 0.28 -5.65 16 27 C 0.13 2.47 6.67 -3.60 -0.02 2.45 16 28 C 0.10 1.59 6.60 -3.59 -0.02 1.56 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.20 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.18 1.92 7.25 -52.49 -0.38 1.54 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.02 4.98 -51.93 -0.26 0.76 16 39 H 0.03 0.61 6.83 -51.93 -0.35 0.25 16 40 H 0.08 1.67 5.42 -51.93 -0.28 1.39 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 44 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -33.52 367.80 -6.98 -40.49 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.95 Total: -0.85 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: -1.58 Total: 16.41 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.22 Total: -62.16 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.28 Total: -14.98 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.49 Total: 15.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.52 -6.98 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332585483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.198 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds