Wall clock time and date at job start Wed Apr 1 2020 03:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35334 * 117.00243 * 2 1 4 4 C 1.40585 * 121.06761 * 270.01941 * 3 2 1 5 5 C 1.41472 * 133.70317 * 0.02562 * 4 3 2 6 6 N 1.30152 * 108.43526 * 179.97438 * 5 4 3 7 7 N 1.39958 * 109.72957 * 359.97438 * 6 5 4 8 8 C 1.46500 * 125.83487 * 180.26830 * 7 6 5 9 9 C 1.36679 * 108.32434 * 0.02562 * 7 6 5 10 10 N 1.33102 * 133.15337 * 180.02562 * 9 7 6 11 11 C 1.31176 * 122.04004 * 179.97438 * 10 9 7 12 12 C 1.40118 * 121.36360 * 0.02562 * 11 10 9 13 13 C 1.47324 * 120.45136 * 180.02562 * 12 11 10 14 14 O 1.21617 * 120.00000 * 227.96773 * 13 12 11 15 15 N 1.34776 * 120.00022 * 47.96311 * 13 12 11 16 16 C 1.46968 * 120.59308 * 5.00388 * 15 13 12 17 17 C 1.53818 * 108.39270 * 124.75887 * 16 15 13 18 18 N 1.46970 * 108.57961 * 49.64233 * 17 16 15 19 19 C 1.36932 * 120.59365 * 124.62293 * 18 17 16 20 20 H 1.08005 * 119.99798 * 204.01885 * 19 18 17 21 21 C 1.38808 * 120.00270 * 24.01636 * 19 18 17 22 22 N 1.31614 * 120.00191 * 218.43423 * 21 19 18 23 23 Si 1.86800 * 119.99846 * 38.43938 * 21 19 18 24 24 H 1.48495 * 109.47381 * 95.62952 * 23 21 19 25 25 H 1.48502 * 109.46998 * 215.63046 * 23 21 19 26 26 H 1.48496 * 109.47142 * 335.62715 * 23 21 19 27 27 C 1.46967 * 118.81001 * 304.64267 * 18 17 16 28 28 C 1.46970 * 120.59559 * 185.28962 * 15 13 12 29 29 H 1.08998 * 109.47124 * 300.00110 * 1 2 3 30 30 H 1.09005 * 109.46447 * 59.99870 * 1 2 3 31 31 H 1.08997 * 109.47173 * 179.97438 * 1 2 3 32 32 H 1.07998 * 125.78028 * 359.97438 * 5 4 3 33 33 H 1.08999 * 109.47052 * 269.69073 * 8 7 6 34 34 H 1.09002 * 109.47260 * 29.69442 * 8 7 6 35 35 H 1.09003 * 109.46861 * 149.69983 * 8 7 6 36 36 H 1.08001 * 119.31851 * 179.97438 * 11 10 9 37 37 H 1.08991 * 109.61341 * 244.54040 * 16 15 13 38 38 H 1.08997 * 109.60648 * 5.05983 * 16 15 13 39 39 H 1.08993 * 109.74308 * 289.84841 * 17 16 15 40 40 H 1.09004 * 109.53091 * 169.30309 * 17 16 15 41 41 H 0.97005 * 120.00209 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.60841 * 295.48225 * 27 18 17 43 43 H 1.08999 * 109.74888 * 175.05388 * 27 18 17 44 44 H 1.09004 * 109.60673 * 354.94567 * 28 15 13 45 45 H 1.08999 * 109.60665 * 115.45606 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2058 0.0000 4 6 2.3725 1.8524 -1.2042 5 6 2.2030 1.5217 -2.5692 6 7 2.6943 2.4871 -3.2907 7 7 3.2043 3.4882 -2.4561 8 6 3.8331 4.7354 -2.8981 9 6 3.0107 3.1057 -1.1583 10 7 3.2996 3.6727 0.0107 11 6 3.0080 3.0987 1.1536 12 6 2.3734 1.8504 1.2017 13 6 2.0546 1.2243 2.4966 14 8 2.3397 0.0588 2.6951 15 7 1.4472 1.9432 3.4614 16 6 0.9986 3.3180 3.1994 17 6 -0.5003 3.4111 3.5321 18 7 -0.7203 2.8364 4.8668 19 6 -1.3366 3.5672 5.8472 20 1 -1.1627 3.3311 6.8867 21 6 -2.1848 4.6113 5.5052 22 7 -2.1878 5.7175 6.2184 23 14 -3.3223 4.4465 4.0326 24 1 -4.6613 3.9955 4.4895 25 1 -3.4477 5.7616 3.3544 26 1 -2.7621 3.4514 3.0834 27 6 -0.2665 1.4637 5.1305 28 6 1.2273 1.3686 4.7961 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7436 0.6208 -2.9483 33 1 4.9068 4.5825 -3.0066 34 1 3.4101 5.0357 -3.8567 35 1 3.6501 5.5160 -2.1596 36 1 3.2630 3.5983 2.0765 37 1 1.5589 4.0114 3.8263 38 1 1.1574 3.5606 2.1487 39 1 -1.0766 2.8532 2.7941 40 1 -0.8103 4.4561 3.5282 41 1 -2.7803 6.4473 5.9792 42 1 -0.8262 0.7671 4.5062 43 1 -0.4224 1.2197 6.1813 44 1 1.5372 0.3235 4.8000 45 1 1.8036 1.9265 5.5340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332585483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:36 Heat of formation + Delta-G solvation = 71.257524 kcal Electronic energy + Delta-G solvation = -31291.945438 eV Core-core repulsion = 27119.959751 eV Total energy + Delta-G solvation = -4171.985687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.10099 -41.37227 -39.93965 -38.74470 -38.46305 -35.64665 -34.71085 -33.68089 -32.70606 -32.03032 -31.33678 -29.01348 -28.26675 -27.91739 -25.73041 -25.25695 -24.56986 -24.35189 -22.40804 -22.03570 -20.56522 -19.41142 -19.35264 -18.73653 -17.98863 -17.58274 -17.22135 -16.96400 -16.69528 -16.40350 -16.23272 -16.01370 -15.99949 -15.74785 -15.24490 -15.21188 -14.94293 -14.72725 -14.38558 -14.28738 -14.13275 -13.94631 -13.54760 -13.49387 -13.32004 -12.93396 -12.78158 -12.53335 -12.39142 -12.24414 -12.11434 -11.93247 -11.58722 -11.42802 -11.35786 -11.16041 -10.69962 -10.66343 -10.16263 -9.90713 -9.51099 -8.91648 -8.22392 -5.34692 -0.67125 -0.35818 0.98988 1.25073 1.34620 1.47660 1.51559 1.53842 1.88602 2.12410 2.44954 2.52880 2.90524 2.95585 3.12922 3.32859 3.38039 3.51019 3.77857 3.86287 4.07895 4.11848 4.17177 4.22575 4.26024 4.33749 4.38303 4.38675 4.38971 4.55909 4.57514 4.64628 4.65888 4.71783 4.76513 4.83957 4.87370 4.99061 5.15027 5.18926 5.47620 5.58408 5.84980 6.05949 6.11313 6.19075 6.34718 6.58446 6.89379 7.04781 7.63529 8.05319 8.94910 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003669 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.873152 B = 7629.189763 C = 8346.912995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.335 6.335 3 C 0.274 3.726 4 C -0.267 4.267 5 C 0.106 3.894 6 N -0.255 5.255 7 N -0.388 5.388 8 C 0.102 3.898 9 C 0.321 3.679 10 N -0.511 5.511 11 C 0.226 3.774 12 C -0.264 4.264 13 C 0.575 3.425 14 O -0.562 6.562 15 N -0.594 5.594 16 C 0.095 3.905 17 C 0.130 3.870 18 N -0.610 5.610 19 C -0.263 4.263 20 H 0.058 0.942 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.888 3.112 24 H -0.305 1.305 25 H -0.296 1.296 26 H -0.239 1.239 27 C 0.133 3.867 28 C 0.106 3.894 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.196 0.804 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.031 0.969 40 H 0.062 0.938 41 H 0.262 0.738 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.402 -5.850 -18.972 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.251 6.251 3 C 0.218 3.782 4 C -0.278 4.278 5 C -0.089 4.089 6 N -0.068 5.068 7 N -0.177 5.177 8 C -0.037 4.037 9 C 0.081 3.919 10 N -0.226 5.226 11 C 0.055 3.945 12 C -0.272 4.272 13 C 0.363 3.637 14 O -0.441 6.441 15 N -0.326 5.326 16 C -0.029 4.029 17 C 0.004 3.996 18 N -0.334 5.334 19 C -0.391 4.391 20 H 0.075 0.925 21 C -0.205 4.205 22 N -0.564 5.564 23 Si 0.715 3.285 24 H -0.234 1.234 25 H -0.222 1.222 26 H -0.163 1.163 27 C 0.008 3.992 28 C -0.018 4.018 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.247 0.753 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.213 0.787 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.281 -5.072 -20.236 23.717 hybrid contribution -1.707 -0.572 0.724 1.940 sum 9.575 -5.645 -19.512 22.455 Atomic orbital electron populations 1.23294 0.75062 1.05772 1.01376 1.85818 1.22234 1.22992 1.94036 1.18493 0.88104 0.82548 0.89066 1.19860 1.13774 0.98643 0.95494 1.24324 0.97195 0.99035 0.88356 1.76888 1.14157 0.97952 1.17801 1.48658 1.50667 1.18732 0.99620 1.22186 0.98393 0.79929 1.03203 1.19317 0.94167 0.90670 0.87788 1.66765 1.23982 1.36125 0.95702 1.23142 0.87561 0.88246 0.95598 1.20988 1.13208 0.99424 0.93622 1.17822 0.77429 0.85234 0.83198 1.90766 1.55205 1.17066 1.81062 1.47975 1.57107 1.15283 1.12210 1.22614 0.96301 0.82110 1.01915 1.21755 0.93876 0.97686 0.86320 1.44400 1.67434 1.11645 1.09906 1.18729 1.21837 1.10441 0.88133 0.92468 1.25556 1.00430 0.95223 0.99245 1.70211 1.38198 1.03529 1.44469 0.86771 0.81468 0.77758 0.82509 1.23357 1.22248 1.16313 1.21423 0.92521 0.84945 1.00352 1.22109 0.97407 0.99870 0.82383 0.94742 0.90788 0.85747 0.75299 0.89518 0.87449 0.88313 0.78692 0.89594 0.88608 0.95122 0.92018 0.92838 0.95336 0.90398 0.88787 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 11.13 113.37 1.26 2.01 16 2 O -0.33 -8.73 9.58 -78.83 -0.76 -9.48 16 3 C 0.27 7.26 5.81 23.34 0.14 7.39 16 4 C -0.27 -6.38 6.14 -21.30 -0.13 -6.52 16 5 C 0.11 2.02 12.06 85.74 1.03 3.05 16 6 N -0.25 -5.30 12.44 -56.31 -0.70 -6.00 16 7 N -0.39 -8.13 4.05 -366.58 -1.49 -9.62 16 8 C 0.10 1.31 11.47 127.77 1.47 2.78 16 9 C 0.32 7.85 7.98 134.02 1.07 8.92 16 10 N -0.51 -12.50 10.36 -192.16 -1.99 -14.49 16 11 C 0.23 5.38 8.63 85.25 0.74 6.11 16 12 C -0.26 -7.26 4.89 -19.93 -0.10 -7.36 16 13 C 0.57 18.14 7.00 86.63 0.61 18.75 16 14 O -0.56 -21.07 15.97 3.31 0.05 -21.02 16 15 N -0.59 -18.29 2.94 -821.12 -2.42 -20.70 16 16 C 0.09 2.84 5.46 86.57 0.47 3.31 16 17 C 0.13 4.98 4.56 86.57 0.39 5.37 16 18 N -0.61 -26.36 2.75 -697.33 -1.92 -28.27 16 19 C -0.26 -13.75 9.86 84.03 0.83 -12.92 16 20 H 0.06 3.25 8.04 -2.91 -0.02 3.23 16 21 C -0.01 -0.34 4.80 84.86 0.41 0.07 16 22 N -0.92 -53.95 13.97 21.65 0.30 -53.65 16 23 Si 0.89 41.72 26.39 68.60 1.81 43.53 16 24 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.24 -10.32 5.01 99.48 0.50 -9.83 16 27 C 0.13 4.80 6.67 86.41 0.58 5.38 16 28 C 0.11 3.32 6.60 86.41 0.57 3.89 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.23 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.20 3.76 7.25 -2.91 -0.02 3.74 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.10 2.46 4.98 -2.39 -0.01 2.45 16 39 H 0.03 1.18 6.83 -2.39 -0.02 1.17 16 40 H 0.06 2.58 5.42 -2.39 -0.01 2.57 16 41 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 2.75 7.92 -2.39 -0.02 2.73 16 44 H 0.09 2.87 6.99 -2.39 -0.02 2.86 16 45 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -71.97 367.80 3.05 -68.92 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.82 Total: 10.53 kcal Atomic # 6 Polarization: 30.91 SS G_CDS: 9.33 Total: 40.24 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -8.21 Total: -132.73 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.70 Total: -30.50 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.81 Total: 43.53 kcal Total: -71.97 3.05 -68.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332585483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.176 kcal (2) G-P(sol) polarization free energy of solvation -71.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds