Wall clock time and date at job start Wed Apr 1 2020 04:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00077 * 2 1 4 4 C 1.38145 * 119.99759 * 179.97438 * 2 1 3 5 5 N 1.31184 * 126.27578 * 359.97438 * 4 2 1 6 6 N 1.28653 * 109.45577 * 180.02562 * 5 4 2 7 7 C 1.31077 * 109.40582 * 359.97438 * 6 5 4 8 8 C 1.47716 * 126.31552 * 180.02562 * 7 6 5 9 9 C 1.39658 * 120.07709 * 179.72758 * 8 7 6 10 10 C 1.37796 * 119.91774 * 179.71798 * 9 8 7 11 11 C 1.39006 * 120.07770 * 0.55376 * 10 9 8 12 12 N 1.39825 * 119.92203 * 179.74530 * 11 10 9 13 13 C 1.34776 * 119.99692 * 213.42516 * 12 11 10 14 14 O 1.21588 * 120.00461 * 5.31094 * 13 12 11 15 15 N 1.34777 * 120.00027 * 185.31700 * 13 12 11 16 16 C 1.46496 * 120.00272 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47385 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47517 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00325 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00280 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99979 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47168 * 89.99845 * 22 20 18 24 24 H 1.48501 * 109.47106 * 210.00127 * 22 20 18 25 25 H 1.48495 * 109.46777 * 329.99920 * 22 20 18 26 26 C 1.39010 * 120.15812 * 359.72179 * 11 10 9 27 27 C 1.37800 * 120.07711 * 359.97438 * 26 11 10 28 28 O 1.34640 * 126.27205 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47210 * 269.99919 * 1 2 3 30 30 H 1.09000 * 109.46835 * 30.00164 * 1 2 3 31 31 H 1.08993 * 109.47253 * 150.00253 * 1 2 3 32 32 H 1.08996 * 109.46811 * 270.00250 * 3 2 1 33 33 H 1.08997 * 109.46926 * 29.99701 * 3 2 1 34 34 H 1.09001 * 109.47177 * 149.99705 * 3 2 1 35 35 H 1.08002 * 120.03987 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.96204 * 180.30174 * 10 9 8 37 37 H 0.96997 * 120.00012 * 33.42017 * 12 11 10 38 38 H 0.97002 * 120.00080 * 359.97438 * 15 13 12 39 39 H 1.08999 * 109.47023 * 299.99980 * 16 15 13 40 40 H 1.08998 * 109.47299 * 60.00071 * 16 15 13 41 41 H 1.09011 * 109.46866 * 300.00293 * 17 16 15 42 42 H 1.08998 * 109.46984 * 59.99706 * 17 16 15 43 43 H 0.97000 * 120.00379 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.96471 * 179.97438 * 26 11 10 45 45 H 1.07994 * 120.04231 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1557 -1.1964 0.0005 5 7 1.6279 -2.3974 0.0015 6 7 2.5660 -3.2778 0.0023 7 6 3.7296 -2.6743 0.0013 8 6 5.0542 -3.3282 0.0011 9 6 6.2167 -2.5543 -0.0058 10 6 7.4506 -3.1676 0.0000 11 6 7.5391 -4.5549 0.0011 12 7 8.7928 -5.1739 0.0015 13 6 8.9658 -6.3462 -0.6405 14 8 8.0598 -6.8175 -1.3003 15 7 10.1431 -6.9962 -0.5512 16 6 10.3310 -8.2707 -1.2486 17 6 11.7443 -8.7934 -0.9840 18 6 11.9378 -10.1042 -1.7019 19 1 11.1330 -10.5228 -2.2880 20 6 13.1422 -10.7690 -1.6106 21 7 13.3109 -11.9132 -2.2367 22 14 14.5345 -10.0446 -0.5975 23 1 14.4391 -10.5388 0.7997 24 1 15.8368 -10.4562 -1.1803 25 1 14.4342 -8.5631 -0.6065 26 6 6.3840 -5.3283 0.0021 27 6 5.1467 -4.7217 0.0027 28 8 3.4941 -1.3436 0.0001 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5138 32 1 2.3792 1.5833 -1.0276 33 1 1.6085 2.0283 0.5138 34 1 3.1500 1.1384 0.5139 35 1 6.1487 -1.4764 -0.0106 36 1 8.3501 -2.5698 -0.0004 37 1 9.5381 -4.7595 0.4639 38 1 10.8661 -6.6201 -0.0251 39 1 9.6021 -8.9948 -0.8847 40 1 10.1926 -8.1227 -2.3196 41 1 12.4736 -8.0693 -1.3476 42 1 11.8823 -8.9415 0.0870 43 1 14.1583 -12.3808 -2.1728 44 1 6.4563 -6.4059 0.0026 45 1 4.2497 -5.3231 0.0040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345166607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:07 Heat of formation + Delta-G solvation = 58.163373 kcal Electronic energy + Delta-G solvation = -27869.656246 eV Core-core repulsion = 23697.102754 eV Total energy + Delta-G solvation = -4172.553492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.16143 -40.65876 -38.85459 -37.65495 -36.31282 -35.47190 -34.75463 -32.90467 -31.80861 -31.24132 -30.22211 -29.14167 -28.63757 -26.09950 -25.09309 -23.97334 -23.30008 -22.04112 -21.91426 -20.86913 -20.71135 -18.50645 -18.36354 -17.74411 -17.70555 -17.14940 -16.80950 -16.47168 -15.65358 -15.36676 -15.21978 -14.93018 -14.69666 -14.30888 -14.09604 -13.94029 -13.77401 -13.43530 -13.29891 -13.25859 -13.08797 -12.77415 -12.68174 -12.63978 -12.58430 -11.95688 -11.64373 -11.54147 -11.33859 -11.20229 -11.05640 -10.50468 -10.38968 -10.32974 -10.02836 -9.88559 -9.37216 -9.20986 -8.89636 -8.67512 -8.58805 -7.84233 -6.13733 -4.14365 0.37390 1.17304 1.23846 1.55095 2.37380 2.63068 2.70884 3.18971 3.22575 3.29885 3.31241 3.66503 3.93359 4.17877 4.27522 4.34656 4.47050 4.62911 4.67941 4.69738 4.76667 4.89481 4.94252 4.99966 5.06429 5.17424 5.19005 5.22793 5.30904 5.39596 5.77242 5.92319 5.95494 6.11413 6.13810 6.15942 6.22183 6.30822 6.38281 6.50564 6.63158 6.77267 6.85804 7.14202 7.18214 7.62665 8.01761 8.22598 8.40837 8.61527 8.90666 9.45931 10.99233 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.041912 B = 0.001476 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.904268 B =18966.983483 C =19457.824003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.576 5.576 3 C 0.092 3.908 4 C 0.418 3.582 5 N -0.341 5.341 6 N -0.253 5.253 7 C 0.194 3.806 8 C -0.045 4.045 9 C -0.066 4.066 10 C -0.155 4.155 11 C 0.202 3.798 12 N -0.692 5.692 13 C 0.697 3.303 14 O -0.571 6.571 15 N -0.733 5.733 16 C 0.146 3.854 17 C -0.022 4.022 18 C -0.524 4.524 19 H 0.077 0.923 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.882 3.118 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.267 1.267 26 C -0.122 4.122 27 C -0.046 4.046 28 O -0.243 6.243 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.408 0.592 38 H 0.394 0.606 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.022 0.978 42 H 0.018 0.982 43 H 0.265 0.735 44 H 0.150 0.850 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.636 30.758 8.653 37.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.304 5.304 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.198 5.198 6 N -0.098 5.098 7 C -0.017 4.017 8 C -0.048 4.048 9 C -0.086 4.086 10 C -0.176 4.176 11 C 0.104 3.896 12 N -0.339 5.339 13 C 0.397 3.603 14 O -0.448 6.448 15 N -0.387 5.387 16 C 0.024 3.976 17 C -0.059 4.059 18 C -0.562 4.562 19 H 0.095 0.905 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.709 3.291 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.192 1.192 26 C -0.143 4.143 27 C -0.066 4.066 28 O -0.124 6.124 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.243 0.757 38 H 0.227 0.773 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.167 0.833 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.232 29.243 7.977 37.007 hybrid contribution 2.490 1.802 0.922 3.209 sum -18.741 31.044 8.900 37.339 Atomic orbital electron populations 1.21789 0.74802 1.04081 1.02586 1.45221 1.05719 0.99441 1.80053 1.21840 0.97287 0.83464 1.02484 1.23295 0.77557 0.90759 0.96552 1.74844 1.23172 0.94050 1.27771 1.74463 0.94971 1.24908 1.15501 1.24833 0.96670 0.75403 1.04778 1.17088 0.85164 0.92646 1.09869 1.20873 0.90631 0.99604 0.97538 1.20714 0.98088 0.92467 1.06300 1.17729 0.84817 0.91138 0.95870 1.42805 1.11107 1.23433 1.56558 1.16036 0.84110 0.80046 0.80117 1.90954 1.41663 1.67575 1.44563 1.45586 1.13297 1.25203 1.54577 1.21486 0.99562 0.80636 0.95959 1.19803 0.91316 0.97573 0.97245 1.20894 1.00577 1.03535 1.31238 0.90526 1.24989 0.98392 0.94595 0.95214 1.69899 1.25424 1.15342 1.42855 0.86753 0.81792 0.79911 0.80599 1.20224 1.21254 1.19154 1.21209 0.90057 1.01741 1.01244 1.21022 0.98407 0.91884 0.95294 1.84744 1.24591 1.29185 1.73862 0.92121 0.90102 0.89787 0.92127 0.89819 0.90898 0.85168 0.84875 0.75681 0.77253 0.91748 0.91782 0.95985 0.96378 0.92505 0.83288 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.46 10.58 59.85 0.63 1.10 16 2 N -0.58 -3.96 3.37 -191.72 -0.65 -4.60 16 3 C 0.09 0.33 10.61 59.85 0.63 0.96 16 4 C 0.42 4.51 8.50 -86.90 -0.74 3.77 16 5 N -0.34 -4.51 11.59 29.87 0.35 -4.17 16 6 N -0.25 -3.57 11.89 32.08 0.38 -3.19 16 7 C 0.19 2.42 7.98 -14.00 -0.11 2.31 16 8 C -0.04 -0.51 5.87 -104.96 -0.62 -1.12 16 9 C -0.07 -0.62 9.72 -39.21 -0.38 -1.00 16 10 C -0.15 -1.40 9.94 -39.46 -0.39 -1.80 16 11 C 0.20 2.32 6.28 -83.64 -0.53 1.80 16 12 N -0.69 -7.71 5.34 -14.18 -0.08 -7.78 16 13 C 0.70 10.73 8.29 -86.92 -0.72 10.01 16 14 O -0.57 -11.04 14.02 5.29 0.07 -10.97 16 15 N -0.73 -11.14 5.56 -65.23 -0.36 -11.50 16 16 C 0.15 2.84 5.61 -4.04 -0.02 2.82 16 17 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 18 C -0.52 -14.36 9.66 -34.45 -0.33 -14.69 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.87 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 22 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 26 C -0.12 -1.56 8.63 -39.46 -0.34 -1.91 16 27 C -0.05 -0.55 9.69 -39.21 -0.38 -0.93 16 28 O -0.24 -2.71 10.16 2.41 0.02 -2.69 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.12 8.07 -51.93 -0.42 -0.30 16 31 H 0.08 0.47 7.67 -51.93 -0.40 0.07 16 32 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.09 8.07 -51.93 -0.42 -0.33 16 34 H 0.07 0.29 7.73 -51.93 -0.40 -0.11 16 35 H 0.13 0.95 7.93 -52.49 -0.42 0.53 16 36 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.41 3.04 8.83 -40.82 -0.36 2.68 16 38 H 0.39 4.75 8.49 -40.82 -0.35 4.41 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.47 7.20 -51.92 -0.37 0.10 16 42 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.15 2.16 6.40 -52.49 -0.34 1.83 16 45 H 0.14 1.62 7.85 -52.49 -0.41 1.21 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -35.81 387.86 -7.79 -43.60 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.98 Total: 3.11 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -3.51 Total: 2.61 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.42 Total: -57.43 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.10 Total: -13.66 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.81 -7.79 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345166607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.765 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds