Wall clock time and date at job start Wed Apr 1 2020 03:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47035 * 2 1 4 4 C 1.46497 * 120.00190 * 275.00061 * 3 2 1 5 5 C 1.50703 * 109.47292 * 274.35672 * 4 3 2 6 6 H 1.08005 * 119.99861 * 4.88710 * 5 4 3 7 7 C 1.37874 * 120.00036 * 184.88035 * 5 4 3 8 8 N 1.31511 * 120.00373 * 5.35518 * 7 5 4 9 9 Si 1.86803 * 119.99820 * 185.34722 * 7 5 4 10 10 H 1.48497 * 109.46897 * 94.93758 * 9 7 5 11 11 H 1.48504 * 109.47000 * 214.93359 * 9 7 5 12 12 H 1.48500 * 109.47176 * 334.93461 * 9 7 5 13 13 S 1.65602 * 119.99989 * 95.00066 * 3 2 1 14 14 O 1.42098 * 106.40112 * 337.88692 * 13 3 2 15 15 O 1.42107 * 106.39881 * 204.97213 * 13 3 2 16 16 N 1.65596 * 107.21654 * 91.43126 * 13 3 2 17 17 C 1.46503 * 119.99952 * 294.86395 * 16 13 3 18 18 H 1.08994 * 109.47179 * 359.10363 * 17 16 13 19 19 C 1.50700 * 109.47176 * 119.11210 * 17 16 13 20 20 N 1.30521 * 126.34918 * 44.99389 * 19 17 16 21 21 N 1.28589 * 109.67117 * 179.73178 * 20 19 17 22 22 C 1.30519 * 109.67439 * 0.45091 * 21 20 19 23 23 N 1.35491 * 107.30896 * 359.56123 * 22 21 20 24 24 C 1.46492 * 126.98322 * 180.25987 * 23 22 21 25 25 C 1.53008 * 109.46779 * 239.10884 * 17 16 13 26 26 C 1.52994 * 109.47176 * 59.01627 * 25 17 16 27 27 C 1.52998 * 109.46689 * 179.01352 * 25 17 16 28 28 H 1.08999 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46990 * 299.99725 * 1 2 3 30 30 H 1.09000 * 109.47254 * 60.00254 * 1 2 3 31 31 H 1.09001 * 109.47096 * 239.99750 * 2 1 3 32 32 H 1.09000 * 109.47254 * 119.99746 * 2 1 3 33 33 H 1.09006 * 109.46874 * 34.35352 * 4 3 2 34 34 H 1.08996 * 109.47920 * 154.35259 * 4 3 2 35 35 H 0.96999 * 120.00300 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99883 * 114.86665 * 16 13 3 37 37 H 1.08007 * 126.34375 * 179.81950 * 22 21 20 38 38 H 1.09000 * 109.46763 * 90.02524 * 24 23 22 39 39 H 1.08998 * 109.47173 * 210.02203 * 24 23 22 40 40 H 1.09003 * 109.47103 * 330.02893 * 24 23 22 41 41 H 1.09000 * 109.47285 * 299.01068 * 25 17 16 42 42 H 1.09004 * 109.47229 * 57.21495 * 26 25 17 43 43 H 1.08993 * 109.47223 * 177.21783 * 26 25 17 44 44 H 1.09007 * 109.47061 * 297.21460 * 26 25 17 45 45 H 1.08998 * 109.47170 * 65.63942 * 27 25 17 46 46 H 1.08997 * 109.47136 * 185.63902 * 27 25 17 47 47 H 1.08998 * 109.47441 * 305.64014 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.5012 1.8012 -1.8745 6 1 4.1498 1.0712 -1.4131 7 6 3.9018 2.4517 -3.0223 8 7 3.1607 3.4146 -3.5252 9 14 5.4977 1.9654 -3.8628 10 1 5.2105 0.9855 -4.9410 11 1 6.1367 3.1717 -4.4475 12 1 6.4143 1.3526 -2.8680 13 16 2.4122 2.1202 1.4287 14 8 1.7130 1.4201 2.4486 15 8 2.2730 3.5173 1.2094 16 7 4.0237 1.8467 1.6940 17 6 4.5067 0.4833 1.9268 18 1 3.6652 -0.2090 1.9044 19 6 5.4936 0.1095 0.8510 20 7 6.4672 0.8538 0.4019 21 7 7.1134 0.2174 -0.5097 22 6 6.5756 -0.9580 -0.6903 23 7 5.5346 -1.0616 0.1707 24 6 4.6358 -2.2070 0.3330 25 6 5.1904 0.4109 3.2937 26 6 4.1954 0.8141 4.3836 27 6 5.6731 -1.0187 3.5473 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3684 1.8013 -1.9494 34 1 2.0807 3.1798 -1.0772 35 1 3.4427 3.8724 -4.3325 36 1 4.6479 2.5892 1.6954 37 1 6.9027 -1.7105 -1.3927 38 1 5.0410 -2.8828 1.0861 39 1 3.6538 -1.8561 0.6503 40 1 4.5440 -2.7342 -0.6166 41 1 6.0426 1.0904 3.3101 42 1 3.3207 0.1655 4.3351 43 1 4.6674 0.7151 5.3611 44 1 3.8892 1.8491 4.2312 45 1 6.4550 -1.2706 2.8309 46 1 6.0698 -1.0940 4.5597 47 1 4.8383 -1.7099 3.4318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352282789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:39 Heat of formation + Delta-G solvation = -1.302000 kcal Electronic energy + Delta-G solvation = -31898.307464 eV Core-core repulsion = 27858.619311 eV Total energy + Delta-G solvation = -4039.688153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.84117 -37.71490 -36.60702 -36.12294 -35.27411 -34.79919 -32.88321 -32.67538 -30.31871 -30.01884 -27.62434 -27.13871 -26.63094 -25.81158 -23.20026 -22.21485 -21.78546 -21.34772 -20.00314 -18.94887 -17.36703 -17.08536 -16.86186 -16.36807 -16.19898 -16.02759 -15.30128 -15.04169 -14.70807 -14.31271 -14.24301 -13.89584 -13.54522 -13.38242 -13.18291 -12.97450 -12.82815 -12.56802 -12.27991 -12.10093 -12.01350 -11.79013 -11.71984 -11.54602 -11.43483 -11.34495 -11.22220 -11.01663 -11.00744 -10.86739 -10.78787 -10.53403 -10.43952 -10.05685 -9.99658 -9.89688 -9.75290 -9.41671 -8.88532 -8.42168 -8.10706 -6.04676 -4.10829 1.20171 2.05819 2.63045 3.22815 3.32642 3.44221 3.47280 3.59426 4.04575 4.32629 4.49131 4.52158 4.54988 4.71203 4.81678 4.86129 4.94338 5.06471 5.14252 5.20380 5.26336 5.31496 5.47870 5.55060 5.62307 5.64295 5.67256 5.74915 5.80671 5.91149 5.93928 5.99158 6.06225 6.16430 6.32000 6.37106 6.44201 6.53282 6.55001 7.05372 7.17037 7.36551 7.45823 7.63111 7.91211 8.18414 8.93178 9.09395 9.56955 11.02781 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009367 B = 0.007258 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.646340 B = 3856.844073 C = 5371.111309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.991 5.991 4 C 0.247 3.753 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.891 5.891 9 Si 0.877 3.123 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.246 1.246 13 S 2.782 3.218 14 O -0.995 6.995 15 O -0.973 6.973 16 N -1.106 6.106 17 C 0.260 3.740 18 H 0.094 0.906 19 C 0.174 3.826 20 N -0.270 5.270 21 N -0.287 5.287 22 C 0.146 3.854 23 N -0.471 5.471 24 C 0.069 3.931 25 C -0.098 4.098 26 C -0.145 4.145 27 C -0.145 4.145 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.263 0.737 36 H 0.423 0.577 37 H 0.211 0.789 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -14.748 11.800 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.833 5.833 4 C 0.125 3.875 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.529 5.529 9 Si 0.704 3.296 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.169 1.169 13 S 2.790 3.210 14 O -0.978 6.978 15 O -0.957 6.957 16 N -0.863 5.863 17 C 0.148 3.852 18 H 0.112 0.888 19 C -0.095 4.095 20 N -0.110 5.110 21 N -0.126 5.126 22 C -0.141 4.141 23 N -0.162 5.162 24 C -0.075 4.075 25 C -0.119 4.119 26 C -0.202 4.202 27 C -0.203 4.203 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.258 0.742 37 H 0.228 0.772 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.468 -13.077 12.033 17.831 hybrid contribution 0.517 -1.317 -1.245 1.885 sum 1.985 -14.394 10.788 18.097 Atomic orbital electron populations 1.22201 0.96561 1.01442 1.02689 1.21013 0.94126 0.83388 1.01219 1.57772 1.78467 1.22552 1.24511 1.19215 0.97174 0.92483 0.78638 1.21437 1.02216 1.23689 1.09905 0.92118 1.24897 0.97013 0.94324 0.97241 1.69947 1.38637 1.22374 1.21913 0.86747 0.84438 0.78344 0.80084 1.21480 1.21464 1.16922 1.01912 0.72733 0.73371 0.73002 1.93553 1.71608 1.75695 1.56968 1.93613 1.85141 1.31003 1.85923 1.56036 1.29277 1.12849 1.88118 1.18788 0.92807 0.84283 0.89273 0.88783 1.24966 1.00877 0.84142 0.99525 1.74147 1.05186 1.23700 1.07949 1.74260 1.23601 1.02633 1.12106 1.26261 0.89885 0.99828 0.98164 1.46030 1.25683 1.14772 1.29742 1.22142 0.93901 0.87027 1.04384 1.21462 0.99389 0.98234 0.92862 1.21819 0.98810 1.02485 0.97119 1.21829 1.00923 0.95634 1.01958 0.92331 0.92440 0.91902 0.90524 0.92629 0.94926 0.92849 0.92776 0.74235 0.77228 0.90065 0.89375 0.88766 0.89470 0.91669 0.92387 0.92268 0.92927 0.91826 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.13 2.01 6.06 -4.04 -0.02 1.98 16 3 N -0.99 -19.49 2.82 -115.66 -0.33 -19.82 16 4 C 0.25 6.06 5.45 -5.19 -0.03 6.03 16 5 C -0.53 -14.00 9.38 -34.44 -0.32 -14.33 16 6 H 0.06 1.55 7.39 -52.48 -0.39 1.16 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.25 -6.06 6.93 56.52 0.39 -5.66 16 13 S 2.78 53.65 5.98 -107.50 -0.64 53.01 16 14 O -0.99 -18.29 16.54 -57.17 -0.95 -19.23 16 15 O -0.97 -22.89 16.73 -57.17 -0.96 -23.85 16 16 N -1.11 -18.54 4.67 -5.88 -0.03 -18.57 16 17 C 0.26 3.64 2.30 -69.08 -0.16 3.49 16 18 H 0.09 1.18 5.14 -51.93 -0.27 0.91 16 19 C 0.17 2.72 5.33 -154.98 -0.83 1.90 16 20 N -0.27 -5.19 12.21 32.80 0.40 -4.79 16 21 N -0.29 -5.48 12.04 29.69 0.36 -5.12 16 22 C 0.15 2.13 12.74 -89.95 -1.15 0.98 16 23 N -0.47 -6.13 3.15 -122.69 -0.39 -6.51 16 24 C 0.07 0.55 11.00 59.84 0.66 1.21 16 25 C -0.10 -1.14 2.68 -90.62 -0.24 -1.38 16 26 C -0.14 -1.63 8.91 37.15 0.33 -1.30 16 27 C -0.15 -1.34 8.85 37.16 0.33 -1.01 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.18 8.11 -51.93 -0.42 0.75 16 32 H 0.06 0.72 5.65 -51.93 -0.29 0.42 16 33 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 34 H 0.05 1.49 6.93 -51.93 -0.36 1.13 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.42 7.12 8.96 -34.47 -0.31 6.82 16 37 H 0.21 2.15 8.06 -52.48 -0.42 1.73 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.68 6.40 -51.93 -0.33 0.35 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.73 7.67 -51.93 -0.40 0.34 16 45 H 0.05 0.53 7.45 -51.93 -0.39 0.15 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -36.48 396.09 -9.36 -45.84 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.37 Total: 4.58 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.15 Total: -2.66 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: 0.75 Total: -80.37 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.90 Total: -43.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.64 Total: 53.01 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.48 -9.36 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352282789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.541 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds