Wall clock time and date at job start Wed Apr 1 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47035 * 2 1 4 4 C 1.46497 * 120.00190 * 275.00061 * 3 2 1 5 5 C 1.50703 * 109.47292 * 274.35672 * 4 3 2 6 6 H 1.08005 * 119.99861 * 4.88710 * 5 4 3 7 7 C 1.37874 * 120.00036 * 184.88035 * 5 4 3 8 8 N 1.31511 * 120.00373 * 5.35518 * 7 5 4 9 9 Si 1.86803 * 119.99820 * 185.34722 * 7 5 4 10 10 H 1.48497 * 109.46897 * 94.93758 * 9 7 5 11 11 H 1.48504 * 109.47000 * 214.93359 * 9 7 5 12 12 H 1.48500 * 109.47176 * 334.93461 * 9 7 5 13 13 S 1.65602 * 119.99989 * 95.00066 * 3 2 1 14 14 O 1.42098 * 106.40112 * 337.88692 * 13 3 2 15 15 O 1.42107 * 106.39881 * 204.97213 * 13 3 2 16 16 N 1.65596 * 107.21654 * 91.43126 * 13 3 2 17 17 C 1.46503 * 119.99952 * 294.86395 * 16 13 3 18 18 H 1.08994 * 109.47179 * 359.10363 * 17 16 13 19 19 C 1.50700 * 109.47176 * 119.11210 * 17 16 13 20 20 N 1.30521 * 126.34918 * 44.99389 * 19 17 16 21 21 N 1.28589 * 109.67117 * 179.73178 * 20 19 17 22 22 C 1.30519 * 109.67439 * 0.45091 * 21 20 19 23 23 N 1.35491 * 107.30896 * 359.56123 * 22 21 20 24 24 C 1.46492 * 126.98322 * 180.25987 * 23 22 21 25 25 C 1.53008 * 109.46779 * 239.10884 * 17 16 13 26 26 C 1.52994 * 109.47176 * 59.01627 * 25 17 16 27 27 C 1.52998 * 109.46689 * 179.01352 * 25 17 16 28 28 H 1.08999 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46990 * 299.99725 * 1 2 3 30 30 H 1.09000 * 109.47254 * 60.00254 * 1 2 3 31 31 H 1.09001 * 109.47096 * 239.99750 * 2 1 3 32 32 H 1.09000 * 109.47254 * 119.99746 * 2 1 3 33 33 H 1.09006 * 109.46874 * 34.35352 * 4 3 2 34 34 H 1.08996 * 109.47920 * 154.35259 * 4 3 2 35 35 H 0.96999 * 120.00300 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99883 * 114.86665 * 16 13 3 37 37 H 1.08007 * 126.34375 * 179.81950 * 22 21 20 38 38 H 1.09000 * 109.46763 * 90.02524 * 24 23 22 39 39 H 1.08998 * 109.47173 * 210.02203 * 24 23 22 40 40 H 1.09003 * 109.47103 * 330.02893 * 24 23 22 41 41 H 1.09000 * 109.47285 * 299.01068 * 25 17 16 42 42 H 1.09004 * 109.47229 * 57.21495 * 26 25 17 43 43 H 1.08993 * 109.47223 * 177.21783 * 26 25 17 44 44 H 1.09007 * 109.47061 * 297.21460 * 26 25 17 45 45 H 1.08998 * 109.47170 * 65.63942 * 27 25 17 46 46 H 1.08997 * 109.47136 * 185.63902 * 27 25 17 47 47 H 1.08998 * 109.47441 * 305.64014 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.5012 1.8012 -1.8745 6 1 4.1498 1.0712 -1.4131 7 6 3.9018 2.4517 -3.0223 8 7 3.1607 3.4146 -3.5252 9 14 5.4977 1.9654 -3.8628 10 1 5.2105 0.9855 -4.9410 11 1 6.1367 3.1717 -4.4475 12 1 6.4143 1.3526 -2.8680 13 16 2.4122 2.1202 1.4287 14 8 1.7130 1.4201 2.4486 15 8 2.2730 3.5173 1.2094 16 7 4.0237 1.8467 1.6940 17 6 4.5067 0.4833 1.9268 18 1 3.6652 -0.2090 1.9044 19 6 5.4936 0.1095 0.8510 20 7 6.4672 0.8538 0.4019 21 7 7.1134 0.2174 -0.5097 22 6 6.5756 -0.9580 -0.6903 23 7 5.5346 -1.0616 0.1707 24 6 4.6358 -2.2070 0.3330 25 6 5.1904 0.4109 3.2937 26 6 4.1954 0.8141 4.3836 27 6 5.6731 -1.0187 3.5473 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3684 1.8013 -1.9494 34 1 2.0807 3.1798 -1.0772 35 1 3.4427 3.8724 -4.3325 36 1 4.6479 2.5892 1.6954 37 1 6.9027 -1.7105 -1.3927 38 1 5.0410 -2.8828 1.0861 39 1 3.6538 -1.8561 0.6503 40 1 4.5440 -2.7342 -0.6166 41 1 6.0426 1.0904 3.3101 42 1 3.3207 0.1655 4.3351 43 1 4.6674 0.7151 5.3611 44 1 3.8892 1.8491 4.2312 45 1 6.4550 -1.2706 2.8309 46 1 6.0698 -1.0940 4.5597 47 1 4.8383 -1.7099 3.4318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352282789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:38 Heat of formation + Delta-G solvation = -27.422120 kcal Electronic energy + Delta-G solvation = -31899.440117 eV Core-core repulsion = 27858.619311 eV Total energy + Delta-G solvation = -4040.820806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.96162 -38.87114 -38.13932 -37.71061 -36.91084 -35.79104 -34.70250 -33.97567 -31.54961 -31.49369 -28.52116 -28.41768 -27.95016 -26.89386 -24.96155 -23.33258 -23.28649 -22.34899 -21.06437 -20.41284 -18.70803 -18.66227 -18.34235 -18.03295 -17.47112 -17.28105 -16.67389 -16.26661 -16.07017 -15.69842 -15.47215 -15.15217 -14.82579 -14.67501 -14.23645 -14.04466 -13.80733 -13.78809 -13.61147 -13.43514 -13.34361 -13.21642 -13.13743 -13.05206 -12.80334 -12.75696 -12.74770 -12.43491 -12.35879 -12.25013 -12.11013 -11.94104 -11.76461 -11.67723 -11.63333 -11.15387 -10.90064 -10.74499 -10.56488 -10.11222 -9.78839 -8.18714 -6.29205 -0.33840 0.98268 1.33494 1.42876 1.59722 1.67039 1.95976 2.13758 2.43703 2.56223 3.14721 3.24800 3.37760 3.47351 3.77878 3.83382 3.95536 3.99115 4.10921 4.27374 4.40086 4.40468 4.45235 4.50388 4.66208 4.66801 4.75432 4.78812 4.85780 4.96409 4.99384 5.01585 5.09959 5.12158 5.20772 5.26066 5.31930 5.41027 5.42996 5.47245 5.50803 5.73730 5.84921 6.04456 6.08479 6.11042 6.82946 7.41548 7.92903 8.88749 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009367 B = 0.007258 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.646340 B = 3856.844073 C = 5371.111309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.995 5.995 4 C 0.264 3.736 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.930 5.930 9 Si 0.937 3.063 10 H -0.276 1.276 11 H -0.303 1.303 12 H -0.243 1.243 13 S 2.795 3.205 14 O -0.983 6.983 15 O -1.021 7.021 16 N -1.105 6.105 17 C 0.255 3.745 18 H 0.114 0.886 19 C 0.173 3.827 20 N -0.319 5.319 21 N -0.344 5.344 22 C 0.154 3.846 23 N -0.464 5.464 24 C 0.053 3.947 25 C -0.094 4.094 26 C -0.145 4.145 27 C -0.139 4.139 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.023 0.977 34 H 0.012 0.988 35 H 0.261 0.739 36 H 0.421 0.579 37 H 0.250 0.750 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.039 0.961 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -18.693 12.948 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 N -0.836 5.836 4 C 0.140 3.860 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.570 5.570 9 Si 0.763 3.237 10 H -0.201 1.201 11 H -0.230 1.230 12 H -0.166 1.166 13 S 2.803 3.197 14 O -0.967 6.967 15 O -1.006 7.006 16 N -0.863 5.863 17 C 0.144 3.856 18 H 0.131 0.869 19 C -0.098 4.098 20 N -0.159 5.159 21 N -0.183 5.183 22 C -0.134 4.134 23 N -0.155 5.155 24 C -0.088 4.088 25 C -0.115 4.115 26 C -0.203 4.203 27 C -0.197 4.197 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.255 0.745 37 H 0.266 0.734 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.503 -17.086 13.204 21.646 hybrid contribution 0.468 -0.188 -1.508 1.591 sum 1.971 -17.274 11.696 20.954 Atomic orbital electron populations 1.22202 0.95607 1.03559 1.01401 1.21397 0.95059 0.81162 1.03131 1.57644 1.79140 1.24199 1.22611 1.18675 0.96239 0.90751 0.80327 1.21712 1.02539 1.22628 1.09072 0.91256 1.25644 0.99723 0.94589 0.98388 1.70069 1.40427 1.23917 1.22592 0.85824 0.81099 0.77535 0.79277 1.20140 1.23007 1.16602 1.01381 0.73199 0.72211 0.72887 1.93555 1.71827 1.75095 1.56194 1.93548 1.86177 1.34331 1.86546 1.55854 1.28235 1.14357 1.87835 1.19193 0.93397 0.82798 0.90205 0.86880 1.25076 1.00258 0.84845 0.99575 1.74024 1.06932 1.25658 1.09281 1.74136 1.25627 1.04917 1.13622 1.26975 0.89345 0.99222 0.97873 1.46268 1.25684 1.15128 1.28400 1.22644 0.93340 0.85904 1.06883 1.21439 0.98766 0.99843 0.91433 1.21838 0.98974 1.01324 0.98121 1.21798 1.01379 0.93998 1.02550 0.88503 0.93299 0.93659 0.89927 0.89285 0.95878 0.96978 0.93007 0.74511 0.73422 0.86851 0.88863 0.86580 0.90872 0.91376 0.90221 0.94150 0.93917 0.90337 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 10.24 71.98 0.74 -3.68 16 2 C 0.12 3.34 6.06 86.38 0.52 3.86 16 3 N -0.99 -38.54 2.82 -519.85 -1.47 -40.01 16 4 C 0.26 13.22 5.45 85.63 0.47 13.69 16 5 C -0.52 -27.40 9.38 25.60 0.24 -27.16 16 6 H 0.07 3.48 7.39 -2.91 -0.02 3.46 16 7 C 0.02 0.89 5.45 84.65 0.46 1.35 16 8 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 9 Si 0.94 45.31 29.54 68.60 2.03 47.34 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 12 H -0.24 -11.59 6.93 99.48 0.69 -10.90 16 13 S 2.80 107.40 5.98 -56.49 -0.34 107.06 16 14 O -0.98 -34.54 16.54 -128.00 -2.12 -36.65 16 15 O -1.02 -49.87 16.73 -128.00 -2.14 -52.01 16 16 N -1.10 -36.74 4.67 -172.51 -0.81 -37.54 16 17 C 0.25 6.65 2.30 44.25 0.10 6.75 16 18 H 0.11 2.44 5.14 -2.39 -0.01 2.43 16 19 C 0.17 5.13 5.33 137.98 0.74 5.86 16 20 N -0.32 -12.18 12.21 -50.15 -0.61 -12.79 16 21 N -0.34 -12.86 12.04 -59.99 -0.72 -13.58 16 22 C 0.15 4.10 12.74 180.11 2.30 6.40 16 23 N -0.46 -10.62 3.15 -542.08 -1.71 -12.33 16 24 C 0.05 0.59 11.00 127.77 1.41 1.99 16 25 C -0.09 -1.98 2.68 -10.79 -0.03 -2.01 16 26 C -0.15 -2.93 8.91 71.98 0.64 -2.29 16 27 C -0.14 -2.09 8.85 71.98 0.64 -1.45 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.27 8.11 -2.39 -0.02 2.26 16 32 H 0.09 1.92 5.65 -2.39 -0.01 1.91 16 33 H 0.02 1.20 8.11 -2.38 -0.02 1.18 16 34 H 0.01 0.71 6.93 -2.39 -0.02 0.70 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.42 14.62 8.96 -96.74 -0.87 13.76 16 37 H 0.25 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.09 0.96 6.40 -2.39 -0.02 0.94 16 40 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.04 0.96 7.67 -2.38 -0.02 0.94 16 45 H 0.04 0.74 7.45 -2.39 -0.02 0.72 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -82.76 396.09 0.71 -82.04 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.09 Total: 21.20 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 8.22 Total: 3.31 kcal Atomic # 7 Polarization: -167.27 SS G_CDS: -5.03 Total: -172.30 kcal Atomic # 8 Polarization: -84.40 SS G_CDS: -4.26 Total: -88.66 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 107.40 SS G_CDS: -0.34 Total: 107.06 kcal Total: -82.76 0.71 -82.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352282789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.621 kcal (2) G-P(sol) polarization free energy of solvation -82.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds