Wall clock time and date at job start Wed Apr 1 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.46933 * 2 1 4 4 C 1.36742 * 127.14030 * 83.73932 * 3 2 1 5 5 C 1.50701 * 126.34458 * 0.02562 * 4 3 2 6 6 H 1.08997 * 109.47366 * 345.00030 * 5 4 3 7 7 C 1.53005 * 109.46983 * 104.99743 * 5 4 3 8 8 N 1.46502 * 109.47002 * 225.00090 * 5 4 3 9 9 S 1.65592 * 119.99977 * 145.00261 * 8 5 4 10 10 C 1.81402 * 104.45305 * 64.99538 * 9 8 5 11 11 O 1.42104 * 104.27863 * 181.06866 * 9 8 5 12 12 O 1.42105 * 104.27841 * 308.92765 * 9 8 5 13 13 N 1.30288 * 107.30609 * 179.97438 * 4 3 2 14 14 N 1.28523 * 110.05804 * 0.02562 * 13 4 3 15 15 C 1.31220 * 109.85624 * 359.74482 * 14 13 4 16 16 N 1.38587 * 126.47208 * 180.26082 * 15 14 13 17 17 C 1.46898 * 110.99757 * 242.36223 * 16 15 14 18 18 C 1.46898 * 110.99901 * 6.31389 * 16 15 14 19 19 H 1.09003 * 109.47327 * 55.00492 * 18 16 15 20 20 C 1.52992 * 109.47427 * 295.00131 * 18 16 15 21 21 C 1.50704 * 109.46929 * 174.99814 * 18 16 15 22 22 H 1.07994 * 120.00113 * 0.02562 * 21 18 16 23 23 C 1.37878 * 119.99882 * 179.97438 * 21 18 16 24 24 N 1.31515 * 120.00103 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 120.00037 * 180.02562 * 23 21 18 26 26 H 1.48500 * 109.46937 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47282 * 120.00044 * 25 23 21 28 28 H 1.48497 * 109.47177 * 240.00362 * 25 23 21 29 29 H 1.09001 * 109.46828 * 173.10720 * 1 2 3 30 30 H 1.09003 * 109.47307 * 293.10301 * 1 2 3 31 31 H 1.08992 * 109.47522 * 53.10914 * 1 2 3 32 32 H 1.08997 * 109.47311 * 119.99563 * 2 1 3 33 33 H 1.08996 * 109.47518 * 239.99890 * 2 1 3 34 34 H 1.08994 * 109.47001 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47188 * 300.00471 * 7 5 4 36 36 H 1.09000 * 109.46622 * 60.00448 * 7 5 4 37 37 H 0.96997 * 119.99869 * 324.99621 * 8 5 4 38 38 H 1.08999 * 109.46742 * 59.99777 * 10 9 8 39 39 H 1.08999 * 109.47555 * 179.97438 * 10 9 8 40 40 H 1.09004 * 109.47349 * 300.00237 * 10 9 8 41 41 H 1.09004 * 109.46899 * 51.85618 * 17 16 15 42 42 H 1.08999 * 109.47331 * 171.85481 * 17 16 15 43 43 H 1.08998 * 109.47001 * 291.85473 * 17 16 15 44 44 H 1.09004 * 109.47772 * 180.02562 * 20 18 16 45 45 H 1.08997 * 109.47534 * 299.99859 * 20 18 16 46 46 H 1.09000 * 109.47184 * 60.00215 * 20 18 16 47 47 H 0.97001 * 119.99872 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1813 2.1992 1.0836 5 6 1.8905 1.8477 2.5198 6 1 1.2832 0.9433 2.5568 7 6 3.2065 1.6088 3.2629 8 7 1.1641 2.9500 3.1549 9 16 0.0051 2.6306 4.2937 10 6 0.9184 1.8845 5.6722 11 8 -0.4900 3.9115 4.6589 12 8 -0.8380 1.6682 3.6754 13 7 2.6358 3.3385 0.6442 14 7 2.7694 3.2966 -0.6334 15 6 2.4095 2.1166 -1.0807 16 7 2.4219 1.6975 -2.4016 17 6 1.0663 1.3687 -2.8623 18 6 3.0420 2.7081 -3.2688 19 1 4.0375 2.9466 -2.8945 20 6 2.1820 3.9734 -3.2731 21 6 3.1489 2.1686 -4.6719 22 1 2.7916 1.1746 -4.8970 23 6 3.7020 2.9444 -5.6685 24 7 4.1367 4.1550 -5.3946 25 14 3.8339 2.2760 -7.4078 26 1 3.2769 0.9002 -7.4530 27 1 3.0690 3.1498 -8.3333 28 1 5.2602 2.2468 -7.8201 29 1 -0.3633 -1.0203 -0.1233 30 1 -0.3634 0.4032 0.9453 31 1 -0.3634 0.6168 -0.8218 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 2.9962 1.3550 4.3018 35 1 3.7469 0.7887 2.7903 36 1 3.8138 2.5132 3.2261 37 1 1.3620 3.8670 2.9084 38 1 1.6646 2.5900 6.0377 39 1 0.2254 1.6397 6.4771 40 1 1.4142 0.9760 5.3302 41 1 0.3976 2.2025 -2.6479 42 1 1.0825 1.1828 -3.9361 43 1 0.7129 0.4771 -2.3445 44 1 2.6419 4.7232 -3.9169 45 1 1.1865 3.7350 -3.6475 46 1 2.1047 4.3637 -2.2582 47 1 4.5261 4.7007 -6.0956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358661830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:11 Heat of formation + Delta-G solvation = 31.895162 kcal Electronic energy + Delta-G solvation = -30034.948671 eV Core-core repulsion = 25996.700055 eV Total energy + Delta-G solvation = -4038.248616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.62473 -37.66144 -37.36755 -36.53397 -36.22343 -35.47334 -32.79247 -30.68235 -30.39937 -30.00921 -28.87693 -28.61053 -25.50177 -25.18225 -24.15601 -23.56352 -21.70237 -20.34240 -19.86808 -19.33986 -18.13500 -17.03910 -16.71259 -16.52758 -16.10264 -15.78497 -15.45830 -15.11015 -14.94780 -14.56185 -14.18765 -13.98672 -13.79044 -13.61460 -13.56103 -13.23680 -13.05238 -12.68167 -12.42356 -12.39921 -12.32814 -12.31063 -12.03707 -11.81129 -11.54133 -11.42419 -11.38540 -11.31219 -11.10449 -10.94694 -10.75231 -10.52682 -10.19094 -10.10368 -9.96638 -9.83272 -9.78092 -9.00840 -8.87323 -8.42806 -7.44666 -6.05466 -4.12862 -0.09342 2.02131 2.39541 2.64939 3.26863 3.33040 3.34861 3.37528 3.48414 3.82998 4.09154 4.30902 4.34695 4.47031 4.54567 4.57533 4.62185 4.76056 4.91424 5.01917 5.12841 5.16091 5.25934 5.35118 5.42219 5.53080 5.54504 5.66878 5.81311 5.88008 5.99571 6.06337 6.17607 6.31462 6.48863 6.74691 6.79202 6.93397 7.10889 7.24394 7.44988 7.63102 7.72252 7.94719 8.27561 8.42689 8.88798 9.28670 9.51821 11.00800 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.002761 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.586619 B =10139.177835 C =10453.908084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.103 3.897 3 N -0.481 5.481 4 C 0.135 3.865 5 C 0.249 3.751 6 H 0.101 0.899 7 C -0.172 4.172 8 N -1.106 6.106 9 S 2.612 3.388 10 C -0.676 4.676 11 O -0.954 6.954 12 O -0.956 6.956 13 N -0.272 5.272 14 N -0.312 5.312 15 C 0.392 3.608 16 N -0.453 5.453 17 C 0.029 3.971 18 C 0.229 3.771 19 H 0.052 0.948 20 C -0.174 4.174 21 C -0.515 4.515 22 H 0.064 0.936 23 C 0.064 3.936 24 N -0.883 5.883 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.430 0.570 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.031 0.969 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.020 0.980 46 H 0.044 0.956 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 -10.010 20.975 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.020 4.020 3 N -0.178 5.178 4 C -0.134 4.134 5 C 0.139 3.861 6 H 0.119 0.881 7 C -0.232 4.232 8 N -0.866 5.866 9 S 2.704 3.296 10 C -0.826 4.826 11 O -0.945 6.945 12 O -0.946 6.946 13 N -0.112 5.112 14 N -0.157 5.157 15 C 0.037 3.963 16 N -0.177 5.177 17 C -0.118 4.118 18 C 0.125 3.875 19 H 0.070 0.930 20 C -0.234 4.234 21 C -0.554 4.554 22 H 0.083 0.917 23 C -0.139 4.139 24 N -0.521 5.521 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.266 0.734 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.049 0.951 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.217 -8.884 20.776 23.436 hybrid contribution 0.019 -0.932 -0.844 1.257 sum -6.198 -9.816 19.933 23.067 Atomic orbital electron populations 1.22337 0.93962 1.03436 1.03967 1.21868 0.95683 0.79551 1.04919 1.46218 1.51718 1.13609 1.06238 1.24012 1.08371 0.90309 0.90664 1.18724 0.93941 0.89205 0.84278 0.88137 1.22444 0.96784 1.04228 0.99744 1.55590 1.58738 1.16005 1.56257 1.04796 0.74240 0.74874 0.75727 1.30671 1.16347 1.14569 1.21022 1.93640 1.77624 1.39225 1.83985 1.93620 1.63334 1.64338 1.73318 1.73832 1.14829 1.17930 1.04626 1.74918 1.25045 1.14044 1.01715 1.23321 0.97177 0.86714 0.89123 1.59300 1.19318 1.43726 0.95310 1.22540 0.87001 0.98812 1.03453 1.19381 0.93704 0.84827 0.89599 0.92985 1.22460 0.98255 1.01905 1.00742 1.21063 1.41137 1.01120 0.92054 0.91744 1.24897 0.95180 0.94807 0.99012 1.69932 1.40233 1.08790 1.33141 0.86426 0.77775 0.78923 0.84154 1.19752 1.21043 1.20966 0.90349 0.91142 0.91325 0.89301 0.87791 0.91434 0.90804 0.90120 0.73370 0.84857 0.85257 0.85204 0.95079 0.88354 0.92775 0.89181 0.96112 0.93743 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.73 37.16 0.36 -1.48 16 2 C 0.10 1.15 5.54 -4.05 -0.02 1.13 16 3 N -0.48 -7.51 2.81 -114.09 -0.32 -7.83 16 4 C 0.14 2.04 6.89 -154.02 -1.06 0.98 16 5 C 0.25 2.46 3.18 -69.08 -0.22 2.25 16 6 H 0.10 0.80 6.66 -51.93 -0.35 0.45 16 7 C -0.17 -1.26 9.46 37.16 0.35 -0.91 16 8 N -1.11 -10.52 5.35 -5.88 -0.03 -10.56 16 9 S 2.61 22.02 6.08 -107.50 -0.65 21.36 16 10 C -0.68 -2.55 10.04 101.05 1.01 -1.53 16 11 O -0.95 -11.66 18.08 -57.54 -1.04 -12.70 16 12 O -0.96 -11.00 17.39 -57.54 -1.00 -12.00 16 13 N -0.27 -5.16 11.94 32.99 0.39 -4.77 16 14 N -0.31 -6.93 9.13 30.32 0.28 -6.65 16 15 C 0.39 7.92 6.69 -318.87 -2.13 5.78 16 16 N -0.45 -9.62 4.74 -176.08 -0.83 -10.45 16 17 C 0.03 0.53 7.97 60.06 0.48 1.01 16 18 C 0.23 5.80 2.04 -68.87 -0.14 5.66 16 19 H 0.05 1.51 8.04 -51.93 -0.42 1.09 16 20 C -0.17 -4.42 8.28 37.15 0.31 -4.11 16 21 C -0.52 -13.62 7.77 -34.44 -0.27 -13.89 16 22 H 0.06 1.66 6.84 -52.49 -0.36 1.30 16 23 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -25.04 11.32 55.43 0.63 -24.41 16 25 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.76 8.02 -51.93 -0.42 0.35 16 31 H 0.07 0.83 6.33 -51.93 -0.33 0.50 16 32 H 0.09 0.70 7.82 -51.93 -0.41 0.30 16 33 H 0.10 1.19 7.47 -51.93 -0.39 0.80 16 34 H 0.07 0.27 5.78 -51.93 -0.30 -0.03 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.43 4.47 8.60 -34.46 -0.30 4.17 16 38 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.13 0.32 8.14 -51.92 -0.42 -0.11 16 40 H 0.13 0.28 6.77 -51.92 -0.35 -0.07 16 41 H 0.03 0.58 6.93 -51.93 -0.36 0.22 16 42 H 0.10 1.89 6.24 -51.93 -0.32 1.56 16 43 H 0.05 0.79 4.65 -51.93 -0.24 0.55 16 44 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 45 H 0.02 0.49 6.67 -51.93 -0.35 0.14 16 46 H 0.04 1.11 5.65 -51.93 -0.29 0.82 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -36.62 378.14 -10.07 -46.68 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.74 Total: 3.39 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.43 Total: -3.50 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 0.11 Total: -64.67 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -2.04 Total: -24.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 22.02 SS G_CDS: -0.65 Total: 21.36 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.62 -10.07 -46.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358661830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.580 kcal (2) G-P(sol) polarization free energy of solvation -36.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds