Wall clock time and date at job start Wed Apr 1 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.46933 * 2 1 4 4 C 1.36742 * 127.14030 * 83.73932 * 3 2 1 5 5 C 1.50701 * 126.34458 * 0.02562 * 4 3 2 6 6 H 1.08997 * 109.47366 * 345.00030 * 5 4 3 7 7 C 1.53005 * 109.46983 * 104.99743 * 5 4 3 8 8 N 1.46502 * 109.47002 * 225.00090 * 5 4 3 9 9 S 1.65592 * 119.99977 * 145.00261 * 8 5 4 10 10 C 1.81402 * 104.45305 * 64.99538 * 9 8 5 11 11 O 1.42104 * 104.27863 * 181.06866 * 9 8 5 12 12 O 1.42105 * 104.27841 * 308.92765 * 9 8 5 13 13 N 1.30288 * 107.30609 * 179.97438 * 4 3 2 14 14 N 1.28523 * 110.05804 * 0.02562 * 13 4 3 15 15 C 1.31220 * 109.85624 * 359.74482 * 14 13 4 16 16 N 1.38587 * 126.47208 * 180.26082 * 15 14 13 17 17 C 1.46898 * 110.99757 * 242.36223 * 16 15 14 18 18 C 1.46898 * 110.99901 * 6.31389 * 16 15 14 19 19 H 1.09003 * 109.47327 * 55.00492 * 18 16 15 20 20 C 1.52992 * 109.47427 * 295.00131 * 18 16 15 21 21 C 1.50704 * 109.46929 * 174.99814 * 18 16 15 22 22 H 1.07994 * 120.00113 * 0.02562 * 21 18 16 23 23 C 1.37878 * 119.99882 * 179.97438 * 21 18 16 24 24 N 1.31515 * 120.00103 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 120.00037 * 180.02562 * 23 21 18 26 26 H 1.48500 * 109.46937 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47282 * 120.00044 * 25 23 21 28 28 H 1.48497 * 109.47177 * 240.00362 * 25 23 21 29 29 H 1.09001 * 109.46828 * 173.10720 * 1 2 3 30 30 H 1.09003 * 109.47307 * 293.10301 * 1 2 3 31 31 H 1.08992 * 109.47522 * 53.10914 * 1 2 3 32 32 H 1.08997 * 109.47311 * 119.99563 * 2 1 3 33 33 H 1.08996 * 109.47518 * 239.99890 * 2 1 3 34 34 H 1.08994 * 109.47001 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47188 * 300.00471 * 7 5 4 36 36 H 1.09000 * 109.46622 * 60.00448 * 7 5 4 37 37 H 0.96997 * 119.99869 * 324.99621 * 8 5 4 38 38 H 1.08999 * 109.46742 * 59.99777 * 10 9 8 39 39 H 1.08999 * 109.47555 * 179.97438 * 10 9 8 40 40 H 1.09004 * 109.47349 * 300.00237 * 10 9 8 41 41 H 1.09004 * 109.46899 * 51.85618 * 17 16 15 42 42 H 1.08999 * 109.47331 * 171.85481 * 17 16 15 43 43 H 1.08998 * 109.47001 * 291.85473 * 17 16 15 44 44 H 1.09004 * 109.47772 * 180.02562 * 20 18 16 45 45 H 1.08997 * 109.47534 * 299.99859 * 20 18 16 46 46 H 1.09000 * 109.47184 * 60.00215 * 20 18 16 47 47 H 0.97001 * 119.99872 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1813 2.1992 1.0836 5 6 1.8905 1.8477 2.5198 6 1 1.2832 0.9433 2.5568 7 6 3.2065 1.6088 3.2629 8 7 1.1641 2.9500 3.1549 9 16 0.0051 2.6306 4.2937 10 6 0.9184 1.8845 5.6722 11 8 -0.4900 3.9115 4.6589 12 8 -0.8380 1.6682 3.6754 13 7 2.6358 3.3385 0.6442 14 7 2.7694 3.2966 -0.6334 15 6 2.4095 2.1166 -1.0807 16 7 2.4219 1.6975 -2.4016 17 6 1.0663 1.3687 -2.8623 18 6 3.0420 2.7081 -3.2688 19 1 4.0375 2.9466 -2.8945 20 6 2.1820 3.9734 -3.2731 21 6 3.1489 2.1686 -4.6719 22 1 2.7916 1.1746 -4.8970 23 6 3.7020 2.9444 -5.6685 24 7 4.1367 4.1550 -5.3946 25 14 3.8339 2.2760 -7.4078 26 1 3.2769 0.9002 -7.4530 27 1 3.0690 3.1498 -8.3333 28 1 5.2602 2.2468 -7.8201 29 1 -0.3633 -1.0203 -0.1233 30 1 -0.3634 0.4032 0.9453 31 1 -0.3634 0.6168 -0.8218 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 2.9962 1.3550 4.3018 35 1 3.7469 0.7887 2.7903 36 1 3.8138 2.5132 3.2261 37 1 1.3620 3.8670 2.9084 38 1 1.6646 2.5900 6.0377 39 1 0.2254 1.6397 6.4771 40 1 1.4142 0.9760 5.3302 41 1 0.3976 2.2025 -2.6479 42 1 1.0825 1.1828 -3.9361 43 1 0.7129 0.4771 -2.3445 44 1 2.6419 4.7232 -3.9169 45 1 1.1865 3.7350 -3.6475 46 1 2.1047 4.3637 -2.2582 47 1 4.5261 4.7007 -6.0956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358661830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:10 Heat of formation + Delta-G solvation = 3.664854 kcal Electronic energy + Delta-G solvation = -30036.172829 eV Core-core repulsion = 25996.700055 eV Total energy + Delta-G solvation = -4039.472774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.99179 -39.18759 -38.23776 -37.45379 -36.99112 -36.62428 -34.75266 -31.62740 -31.54600 -30.67200 -30.46337 -29.73187 -27.28725 -26.94550 -25.24188 -24.53993 -23.30621 -21.45160 -21.17288 -20.34681 -18.90444 -18.42681 -17.96558 -17.61410 -17.27762 -17.01880 -16.91764 -16.36175 -16.11685 -15.87752 -15.19370 -15.11645 -14.85462 -14.55489 -14.39377 -14.26829 -13.97181 -13.89070 -13.48706 -13.37125 -13.26741 -13.18326 -13.10558 -12.97148 -12.92187 -12.71514 -12.69235 -12.57365 -12.47554 -12.27463 -12.15727 -12.00816 -11.95117 -11.94281 -11.37538 -11.09642 -10.86179 -10.73177 -10.51852 -10.49589 -9.06462 -8.12302 -6.27357 -0.69660 0.79599 1.30944 1.44680 1.45960 1.57917 1.70473 1.96030 2.41992 2.90636 2.97558 3.14443 3.18062 3.29064 3.65689 3.76478 3.99104 4.03398 4.07634 4.11073 4.19207 4.30713 4.34412 4.44176 4.46899 4.56927 4.63784 4.73084 4.78068 4.81452 4.96536 5.03421 5.04688 5.11600 5.13283 5.20780 5.26085 5.35086 5.45539 5.60898 5.61980 5.86203 5.91475 6.06103 6.21573 6.59180 6.82385 7.41542 7.86983 8.94535 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.002761 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.586619 B =10139.177835 C =10453.908084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 N -0.473 5.473 4 C 0.162 3.838 5 C 0.244 3.756 6 H 0.129 0.871 7 C -0.171 4.171 8 N -1.113 6.113 9 S 2.611 3.389 10 C -0.647 4.647 11 O -1.002 7.002 12 O -0.993 6.993 13 N -0.312 5.312 14 N -0.363 5.363 15 C 0.368 3.632 16 N -0.454 5.454 17 C 0.034 3.966 18 C 0.243 3.757 19 H 0.004 0.996 20 C -0.156 4.156 21 C -0.524 4.524 22 H 0.073 0.927 23 C 0.012 3.988 24 N -0.919 5.919 25 Si 0.969 3.031 26 H -0.258 1.258 27 H -0.282 1.282 28 H -0.283 1.283 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.423 0.577 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.040 0.960 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 -13.616 23.311 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.031 4.031 3 N -0.169 5.169 4 C -0.109 4.109 5 C 0.134 3.866 6 H 0.147 0.853 7 C -0.230 4.230 8 N -0.870 5.870 9 S 2.708 3.292 10 C -0.802 4.802 11 O -0.993 6.993 12 O -0.984 6.984 13 N -0.151 5.151 14 N -0.207 5.207 15 C 0.010 3.990 16 N -0.177 5.177 17 C -0.112 4.112 18 C 0.137 3.863 19 H 0.022 0.978 20 C -0.216 4.216 21 C -0.562 4.562 22 H 0.091 0.909 23 C -0.188 4.188 24 N -0.558 5.558 25 Si 0.794 3.206 26 H -0.182 1.182 27 H -0.208 1.208 28 H -0.209 1.209 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.258 0.742 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.177 0.823 41 H 0.036 0.964 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.058 0.942 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.727 -12.504 23.098 27.113 hybrid contribution 0.139 0.134 -1.329 1.343 sum -6.588 -12.370 21.768 25.890 Atomic orbital electron populations 1.22319 0.93043 1.05000 1.02789 1.22369 0.96379 0.77210 1.07132 1.46470 1.50633 1.14977 1.04785 1.25153 1.04345 0.88790 0.92595 1.19208 0.96134 0.90106 0.81131 0.85330 1.22492 0.94787 1.03736 1.01976 1.55596 1.58616 1.15561 1.57275 1.04661 0.74181 0.73801 0.76542 1.30421 1.16414 1.15510 1.17831 1.93580 1.79047 1.42014 1.84647 1.93564 1.65292 1.64441 1.75056 1.73729 1.17603 1.20293 1.03518 1.74747 1.26361 1.16053 1.03575 1.23156 0.98922 0.87426 0.89480 1.59168 1.20683 1.42255 0.95608 1.22581 0.85441 0.99906 1.03289 1.18914 0.91704 0.85731 0.89987 0.97785 1.22238 0.98124 1.01476 0.99719 1.21360 1.40851 1.01413 0.92593 0.90931 1.25793 0.94757 0.94956 1.03264 1.70094 1.41116 1.10178 1.34406 0.85335 0.77592 0.78816 0.78826 1.18221 1.20834 1.20920 0.87003 0.91541 0.93609 0.84990 0.87805 0.87002 0.90173 0.91824 0.74228 0.82696 0.82930 0.82279 0.96403 0.89302 0.88827 0.92037 0.95664 0.94163 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.73 71.98 0.70 -2.37 16 2 C 0.09 1.74 5.54 86.38 0.48 2.22 16 3 N -0.47 -14.36 2.81 -514.87 -1.45 -15.81 16 4 C 0.16 4.78 6.89 137.64 0.95 5.73 16 5 C 0.24 4.21 3.18 44.25 0.14 4.35 16 6 H 0.13 1.50 6.66 -2.39 -0.02 1.49 16 7 C -0.17 -1.87 9.46 71.98 0.68 -1.19 16 8 N -1.11 -19.67 5.35 -172.51 -0.92 -20.59 16 9 S 2.61 39.03 6.08 -56.49 -0.34 38.69 16 10 C -0.65 -1.43 10.04 113.37 1.14 -0.30 16 11 O -1.00 -24.31 18.08 -127.65 -2.31 -26.62 16 12 O -0.99 -21.14 17.39 -127.65 -2.22 -23.36 16 13 N -0.31 -12.31 11.94 -49.54 -0.59 -12.90 16 14 N -0.36 -17.00 9.13 -58.00 -0.53 -17.52 16 15 C 0.37 15.27 6.69 260.11 1.74 17.01 16 16 N -0.45 -19.80 4.74 -711.00 -3.37 -23.17 16 17 C 0.03 1.26 7.97 127.69 1.02 2.28 16 18 C 0.24 12.91 2.04 44.17 0.09 13.00 16 19 H 0.00 0.26 8.04 -2.39 -0.02 0.24 16 20 C -0.16 -8.40 8.28 71.98 0.60 -7.80 16 21 C -0.52 -28.38 7.77 25.60 0.20 -28.18 16 22 H 0.07 3.73 6.84 -2.91 -0.02 3.71 16 23 C 0.01 0.64 5.30 84.65 0.45 1.09 16 24 N -0.92 -54.25 11.32 21.45 0.24 -54.00 16 25 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.25 8.02 -2.39 -0.02 1.23 16 31 H 0.04 1.03 6.33 -2.39 -0.02 1.01 16 32 H 0.13 1.44 7.82 -2.39 -0.02 1.43 16 33 H 0.10 2.08 7.47 -2.39 -0.02 2.06 16 34 H 0.11 0.23 5.78 -2.39 -0.01 0.21 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.42 8.92 8.60 -96.75 -0.83 8.09 16 38 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.16 -0.44 6.77 -2.39 -0.02 -0.46 16 41 H 0.02 0.68 6.93 -2.38 -0.02 0.66 16 42 H 0.09 3.41 6.24 -2.39 -0.01 3.39 16 43 H 0.09 2.63 4.65 -2.39 -0.01 2.62 16 44 H 0.06 3.64 6.07 -2.39 -0.01 3.62 16 45 H 0.02 1.26 6.67 -2.39 -0.02 1.25 16 46 H 0.04 2.16 5.65 -2.39 -0.01 2.15 16 47 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -87.51 378.14 -1.10 -88.61 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.18 Total: 15.80 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 8.18 Total: 5.84 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -6.62 Total: -144.00 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -4.53 Total: -49.98 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 39.03 SS G_CDS: -0.34 Total: 38.69 kcal Total: -87.51 -1.10 -88.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358661830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.276 kcal (2) G-P(sol) polarization free energy of solvation -87.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds