Wall clock time and date at job start Wed Apr 1 2020 03:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47182 * 2 1 4 4 C 1.36741 * 127.13197 * 84.15886 * 3 2 1 5 5 C 1.50700 * 126.34791 * 0.02562 * 4 3 2 6 6 H 1.09002 * 109.47191 * 15.00537 * 5 4 3 7 7 C 1.53000 * 109.47496 * 254.99774 * 5 4 3 8 8 N 1.46503 * 109.46779 * 134.99886 * 5 4 3 9 9 S 1.65605 * 119.99821 * 215.00155 * 8 5 4 10 10 C 1.81397 * 104.45044 * 64.99878 * 9 8 5 11 11 O 1.42103 * 104.27633 * 181.07579 * 9 8 5 12 12 O 1.42098 * 104.27457 * 308.92565 * 9 8 5 13 13 N 1.30301 * 107.30500 * 180.28645 * 4 3 2 14 14 N 1.28527 * 110.04817 * 359.56114 * 13 4 3 15 15 C 1.31217 * 109.86258 * 0.45030 * 14 13 4 16 16 N 1.38580 * 126.46957 * 179.69071 * 15 14 13 17 17 C 1.46901 * 111.00224 * 243.61150 * 16 15 14 18 18 C 1.46898 * 111.00526 * 7.56772 * 16 15 14 19 19 H 1.09002 * 109.47113 * 54.99570 * 18 16 15 20 20 C 1.53006 * 109.46756 * 294.99941 * 18 16 15 21 21 C 1.50694 * 109.47476 * 174.99851 * 18 16 15 22 22 H 1.08004 * 119.99987 * 359.97438 * 21 18 16 23 23 C 1.37880 * 120.00286 * 179.97438 * 21 18 16 24 24 N 1.31519 * 119.99760 * 0.02562 * 23 21 18 25 25 Si 1.86795 * 120.00195 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.47119 * 60.00387 * 25 23 21 27 27 H 1.48497 * 109.47155 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47387 * 299.99929 * 25 23 21 29 29 H 1.08996 * 109.47249 * 293.15980 * 1 2 3 30 30 H 1.09003 * 109.47411 * 53.16922 * 1 2 3 31 31 H 1.09004 * 109.46652 * 173.16435 * 1 2 3 32 32 H 1.09005 * 109.47027 * 240.00879 * 2 1 3 33 33 H 1.08995 * 109.47406 * 120.00313 * 2 1 3 34 34 H 1.09004 * 109.47004 * 300.00514 * 7 5 4 35 35 H 1.09003 * 109.46897 * 59.99705 * 7 5 4 36 36 H 1.08993 * 109.47198 * 180.02562 * 7 5 4 37 37 H 0.96999 * 120.00304 * 35.00475 * 8 5 4 38 38 H 1.09001 * 109.46687 * 60.00050 * 10 9 8 39 39 H 1.09002 * 109.46761 * 179.97438 * 10 9 8 40 40 H 1.08992 * 109.47233 * 300.00291 * 10 9 8 41 41 H 1.08992 * 109.47268 * 52.89871 * 17 16 15 42 42 H 1.09000 * 109.47117 * 172.90556 * 17 16 15 43 43 H 1.09010 * 109.46727 * 292.90142 * 17 16 15 44 44 H 1.09002 * 109.47007 * 299.99694 * 20 18 16 45 45 H 1.09001 * 109.47176 * 59.99623 * 20 18 16 46 46 H 1.09003 * 109.46857 * 179.97438 * 20 18 16 47 47 H 0.96995 * 119.99767 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1889 2.1964 1.0845 5 6 1.9079 1.8413 2.5218 6 1 1.7999 0.7606 2.6146 7 6 0.6149 2.5238 2.9726 8 7 3.0184 2.2949 3.3629 9 16 3.4746 1.4049 4.6828 10 6 4.0886 -0.1539 3.9874 11 8 4.5407 2.1494 5.2561 12 8 2.2645 1.1904 5.3961 13 7 2.6341 3.3392 0.6442 14 7 2.7641 3.2985 -0.6338 15 6 2.3968 2.1212 -1.0821 16 7 2.3931 1.7079 -2.4048 17 6 1.0282 1.4120 -2.8602 18 6 3.0317 2.7081 -3.2708 19 1 4.0342 2.9223 -2.9004 20 6 2.2005 3.9926 -3.2651 21 6 3.1194 2.1727 -4.6767 22 1 2.7392 1.1877 -4.9041 23 6 3.6850 2.9402 -5.6727 24 7 4.1485 4.1395 -5.3956 25 14 3.7944 2.2763 -7.4152 26 1 2.4288 1.9834 -7.9199 27 1 4.4398 3.2874 -8.2906 28 1 4.6020 1.0301 -7.4204 29 1 -0.3633 0.4042 0.9448 30 1 -0.3634 0.6160 -0.8226 31 1 -0.3633 -1.0204 -0.1223 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.7230 3.6044 2.8797 35 1 -0.2113 2.1863 2.3467 36 1 0.4120 2.2672 4.0122 37 1 3.4863 3.1166 3.1468 38 1 4.9290 0.0503 3.3240 39 1 4.4147 -0.8087 4.7955 40 1 3.2914 -0.6397 3.4248 41 1 0.3836 2.2667 -2.6556 42 1 1.0379 1.2123 -3.9317 43 1 0.6503 0.5371 -2.3310 44 1 1.1980 3.7783 -3.6355 45 1 2.1370 4.3799 -2.2481 46 1 2.6745 4.7349 -3.9073 47 1 4.5460 4.6796 -6.0963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358661842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:19 Heat of formation + Delta-G solvation = 31.917660 kcal Electronic energy + Delta-G solvation = -30006.146726 eV Core-core repulsion = 25967.899086 eV Total energy + Delta-G solvation = -4038.247640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.69932 -37.68654 -37.37116 -36.51848 -36.19672 -35.55873 -32.83202 -30.66364 -30.51691 -29.84636 -28.95859 -28.67576 -25.52386 -25.22307 -24.15840 -23.75066 -21.76256 -20.32857 -19.87590 -19.38388 -18.14077 -17.09018 -16.66179 -16.53449 -16.21253 -15.82526 -15.51045 -15.10614 -15.04579 -14.60549 -14.14718 -13.86433 -13.72562 -13.64423 -13.52658 -13.32643 -13.14975 -12.78851 -12.50124 -12.40277 -12.36459 -12.27094 -12.01276 -11.76372 -11.58251 -11.46165 -11.42643 -11.34191 -11.15140 -10.95361 -10.81645 -10.56415 -10.24298 -10.13782 -9.97621 -9.91055 -9.82578 -9.06815 -8.92404 -8.45599 -7.51064 -6.08539 -4.16488 -0.05723 1.97134 2.30261 2.62777 3.25710 3.26710 3.31834 3.32626 3.48988 3.85922 4.09817 4.24792 4.30726 4.39696 4.43510 4.51908 4.60824 4.74818 4.92127 5.00516 5.03980 5.22583 5.28425 5.32966 5.37388 5.51257 5.53269 5.63922 5.79215 5.86975 5.94192 6.04771 6.14500 6.23601 6.42080 6.73341 6.75278 6.87153 7.06205 7.20448 7.39289 7.58199 7.67537 7.90292 8.23806 8.37994 8.84465 9.22596 9.48256 10.97578 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.002817 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.294709 B = 9935.529868 C =10331.106149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 N -0.483 5.483 4 C 0.129 3.871 5 C 0.258 3.742 6 H 0.089 0.911 7 C -0.164 4.164 8 N -1.105 6.105 9 S 2.614 3.386 10 C -0.677 4.677 11 O -0.954 6.954 12 O -0.954 6.954 13 N -0.269 5.269 14 N -0.311 5.311 15 C 0.392 3.608 16 N -0.454 5.454 17 C 0.030 3.970 18 C 0.229 3.771 19 H 0.052 0.948 20 C -0.175 4.175 21 C -0.518 4.518 22 H 0.063 0.937 23 C 0.065 3.935 24 N -0.883 5.883 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.430 0.570 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.031 0.969 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.045 0.955 46 H 0.089 0.911 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 -11.507 16.467 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.021 4.021 3 N -0.180 5.180 4 C -0.140 4.140 5 C 0.148 3.852 6 H 0.107 0.893 7 C -0.224 4.224 8 N -0.866 5.866 9 S 2.705 3.295 10 C -0.826 4.826 11 O -0.945 6.945 12 O -0.944 6.944 13 N -0.109 5.109 14 N -0.156 5.156 15 C 0.037 3.963 16 N -0.177 5.177 17 C -0.118 4.118 18 C 0.125 3.875 19 H 0.069 0.931 20 C -0.234 4.234 21 C -0.556 4.556 22 H 0.081 0.919 23 C -0.138 4.138 24 N -0.520 5.520 25 Si 0.728 3.272 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.267 0.733 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.050 0.950 42 H 0.116 0.884 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.256 -10.273 17.236 21.018 hybrid contribution -0.310 -1.272 -1.856 2.271 sum -6.566 -11.545 15.381 20.321 Atomic orbital electron populations 1.22340 0.94074 1.03561 1.03532 1.21851 0.95615 0.79753 1.04896 1.46238 1.52126 1.13372 1.06270 1.24276 1.08827 0.90035 0.90864 1.18622 0.87294 0.97922 0.81401 0.89347 1.22305 0.94746 1.02735 1.02597 1.55667 1.44860 1.38746 1.47299 1.04793 0.74676 0.76340 0.73658 1.30570 1.13694 1.23935 1.14447 1.93639 1.57314 1.68405 1.75100 1.93621 1.44838 1.86332 1.69601 1.73876 1.14883 1.17634 1.04518 1.74943 1.24728 1.14193 1.01721 1.23348 0.97084 0.86822 0.89087 1.59326 1.18330 1.44853 0.95232 1.22533 0.86877 0.98896 1.03449 1.19374 0.93548 0.84951 0.89583 0.93056 1.22474 0.98297 1.01812 1.00819 1.20975 1.40710 1.02026 0.91914 0.91875 1.24893 0.95108 0.94808 0.99017 1.69908 1.39218 1.09535 1.33378 0.86536 0.78256 0.78601 0.83828 1.20281 1.21233 1.20216 0.91765 0.91050 0.90247 0.87662 0.89562 0.90651 0.91491 0.89915 0.73322 0.84947 0.85172 0.85690 0.95023 0.88383 0.92858 0.96114 0.93614 0.89196 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.75 37.16 0.36 -1.02 16 2 C 0.10 0.98 5.75 -4.04 -0.02 0.96 16 3 N -0.48 -6.92 2.81 -114.08 -0.32 -7.24 16 4 C 0.13 1.83 6.89 -154.01 -1.06 0.77 16 5 C 0.26 2.57 3.08 -69.08 -0.21 2.36 16 6 H 0.09 0.58 6.10 -51.93 -0.32 0.26 16 7 C -0.16 -1.57 9.50 37.16 0.35 -1.22 16 8 N -1.11 -10.71 5.35 -5.88 -0.03 -10.75 16 9 S 2.61 22.53 6.02 -107.50 -0.65 21.89 16 10 C -0.68 -3.60 10.78 101.05 1.09 -2.51 16 11 O -0.95 -11.82 18.08 -57.54 -1.04 -12.86 16 12 O -0.95 -10.34 17.11 -57.54 -0.98 -11.33 16 13 N -0.27 -4.95 11.95 32.99 0.39 -4.55 16 14 N -0.31 -6.66 9.10 30.31 0.28 -6.39 16 15 C 0.39 7.52 6.69 -318.89 -2.13 5.39 16 16 N -0.45 -9.22 4.74 -176.08 -0.84 -10.06 16 17 C 0.03 0.51 8.11 60.07 0.49 0.99 16 18 C 0.23 5.67 2.05 -68.87 -0.14 5.53 16 19 H 0.05 1.46 8.05 -51.93 -0.42 1.04 16 20 C -0.17 -4.31 8.27 37.16 0.31 -4.00 16 21 C -0.52 -13.41 7.78 -34.44 -0.27 -13.68 16 22 H 0.06 1.58 6.83 -52.48 -0.36 1.22 16 23 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 25 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.07 0.70 6.21 -51.93 -0.32 0.37 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.11 1.07 7.65 -51.93 -0.40 0.68 16 33 H 0.09 0.55 7.34 -51.93 -0.38 0.17 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.57 7.66 -51.93 -0.40 0.18 16 36 H 0.08 0.74 7.42 -51.93 -0.39 0.36 16 37 H 0.43 4.54 8.60 -34.47 -0.30 4.25 16 38 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.12 0.45 7.44 -51.93 -0.39 0.07 16 41 H 0.03 0.56 6.88 -51.93 -0.36 0.20 16 42 H 0.10 1.79 6.26 -51.93 -0.33 1.46 16 43 H 0.05 0.71 4.60 -51.92 -0.24 0.47 16 44 H 0.02 0.47 6.64 -51.93 -0.34 0.13 16 45 H 0.05 1.11 5.61 -51.93 -0.29 0.82 16 46 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 47 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -35.47 379.19 -9.96 -45.43 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.76 Total: 3.61 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.33 Total: -4.81 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.11 Total: -63.06 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -2.02 Total: -24.19 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 22.53 SS G_CDS: -0.65 Total: 21.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.47 -9.96 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358661842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.352 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds