Wall clock time and date at job start Wed Apr 1 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47182 * 2 1 4 4 C 1.36741 * 127.13197 * 84.15886 * 3 2 1 5 5 C 1.50700 * 126.34791 * 0.02562 * 4 3 2 6 6 H 1.09002 * 109.47191 * 15.00537 * 5 4 3 7 7 C 1.53000 * 109.47496 * 254.99774 * 5 4 3 8 8 N 1.46503 * 109.46779 * 134.99886 * 5 4 3 9 9 S 1.65605 * 119.99821 * 215.00155 * 8 5 4 10 10 C 1.81397 * 104.45044 * 64.99878 * 9 8 5 11 11 O 1.42103 * 104.27633 * 181.07579 * 9 8 5 12 12 O 1.42098 * 104.27457 * 308.92565 * 9 8 5 13 13 N 1.30301 * 107.30500 * 180.28645 * 4 3 2 14 14 N 1.28527 * 110.04817 * 359.56114 * 13 4 3 15 15 C 1.31217 * 109.86258 * 0.45030 * 14 13 4 16 16 N 1.38580 * 126.46957 * 179.69071 * 15 14 13 17 17 C 1.46901 * 111.00224 * 243.61150 * 16 15 14 18 18 C 1.46898 * 111.00526 * 7.56772 * 16 15 14 19 19 H 1.09002 * 109.47113 * 54.99570 * 18 16 15 20 20 C 1.53006 * 109.46756 * 294.99941 * 18 16 15 21 21 C 1.50694 * 109.47476 * 174.99851 * 18 16 15 22 22 H 1.08004 * 119.99987 * 359.97438 * 21 18 16 23 23 C 1.37880 * 120.00286 * 179.97438 * 21 18 16 24 24 N 1.31519 * 119.99760 * 0.02562 * 23 21 18 25 25 Si 1.86795 * 120.00195 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.47119 * 60.00387 * 25 23 21 27 27 H 1.48497 * 109.47155 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47387 * 299.99929 * 25 23 21 29 29 H 1.08996 * 109.47249 * 293.15980 * 1 2 3 30 30 H 1.09003 * 109.47411 * 53.16922 * 1 2 3 31 31 H 1.09004 * 109.46652 * 173.16435 * 1 2 3 32 32 H 1.09005 * 109.47027 * 240.00879 * 2 1 3 33 33 H 1.08995 * 109.47406 * 120.00313 * 2 1 3 34 34 H 1.09004 * 109.47004 * 300.00514 * 7 5 4 35 35 H 1.09003 * 109.46897 * 59.99705 * 7 5 4 36 36 H 1.08993 * 109.47198 * 180.02562 * 7 5 4 37 37 H 0.96999 * 120.00304 * 35.00475 * 8 5 4 38 38 H 1.09001 * 109.46687 * 60.00050 * 10 9 8 39 39 H 1.09002 * 109.46761 * 179.97438 * 10 9 8 40 40 H 1.08992 * 109.47233 * 300.00291 * 10 9 8 41 41 H 1.08992 * 109.47268 * 52.89871 * 17 16 15 42 42 H 1.09000 * 109.47117 * 172.90556 * 17 16 15 43 43 H 1.09010 * 109.46727 * 292.90142 * 17 16 15 44 44 H 1.09002 * 109.47007 * 299.99694 * 20 18 16 45 45 H 1.09001 * 109.47176 * 59.99623 * 20 18 16 46 46 H 1.09003 * 109.46857 * 179.97438 * 20 18 16 47 47 H 0.96995 * 119.99767 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1889 2.1964 1.0845 5 6 1.9079 1.8413 2.5218 6 1 1.7999 0.7606 2.6146 7 6 0.6149 2.5238 2.9726 8 7 3.0184 2.2949 3.3629 9 16 3.4746 1.4049 4.6828 10 6 4.0886 -0.1539 3.9874 11 8 4.5407 2.1494 5.2561 12 8 2.2645 1.1904 5.3961 13 7 2.6341 3.3392 0.6442 14 7 2.7641 3.2985 -0.6338 15 6 2.3968 2.1212 -1.0821 16 7 2.3931 1.7079 -2.4048 17 6 1.0282 1.4120 -2.8602 18 6 3.0317 2.7081 -3.2708 19 1 4.0342 2.9223 -2.9004 20 6 2.2005 3.9926 -3.2651 21 6 3.1194 2.1727 -4.6767 22 1 2.7392 1.1877 -4.9041 23 6 3.6850 2.9402 -5.6727 24 7 4.1485 4.1395 -5.3956 25 14 3.7944 2.2763 -7.4152 26 1 2.4288 1.9834 -7.9199 27 1 4.4398 3.2874 -8.2906 28 1 4.6020 1.0301 -7.4204 29 1 -0.3633 0.4042 0.9448 30 1 -0.3634 0.6160 -0.8226 31 1 -0.3633 -1.0204 -0.1223 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.7230 3.6044 2.8797 35 1 -0.2113 2.1863 2.3467 36 1 0.4120 2.2672 4.0122 37 1 3.4863 3.1166 3.1468 38 1 4.9290 0.0503 3.3240 39 1 4.4147 -0.8087 4.7955 40 1 3.2914 -0.6397 3.4248 41 1 0.3836 2.2667 -2.6556 42 1 1.0379 1.2123 -3.9317 43 1 0.6503 0.5371 -2.3310 44 1 1.1980 3.7783 -3.6355 45 1 2.1370 4.3799 -2.2481 46 1 2.6745 4.7349 -3.9073 47 1 4.5460 4.6796 -6.0963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358661842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:18 Heat of formation + Delta-G solvation = 5.089891 kcal Electronic energy + Delta-G solvation = -30007.310065 eV Core-core repulsion = 25967.899086 eV Total energy + Delta-G solvation = -4039.410979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.98698 -39.16886 -38.24751 -37.44578 -36.98768 -36.58915 -34.73923 -31.59002 -31.55182 -30.64264 -30.29735 -29.94558 -27.26696 -26.91492 -25.12967 -24.68845 -23.30996 -21.37958 -21.16852 -20.34186 -18.92309 -18.40965 -17.98380 -17.48613 -17.29151 -17.14153 -16.89348 -16.30089 -16.11653 -15.87935 -15.19396 -15.13466 -14.81526 -14.51370 -14.37820 -14.06300 -14.01068 -13.96840 -13.61808 -13.34782 -13.30431 -13.20008 -13.09377 -12.95081 -12.87786 -12.78124 -12.66050 -12.55888 -12.48759 -12.17912 -12.14387 -12.04285 -11.94479 -11.92512 -11.35193 -11.08476 -10.85847 -10.72378 -10.51855 -10.48231 -9.04970 -8.11151 -6.26407 -0.70706 0.80632 1.25938 1.46194 1.48018 1.55656 1.72870 1.96280 2.42688 2.83072 3.02043 3.17553 3.19854 3.25222 3.57750 3.68345 3.97890 4.05689 4.08116 4.12545 4.18352 4.27384 4.38280 4.41628 4.51260 4.60651 4.66040 4.76027 4.84224 4.88615 4.93526 5.00266 5.03500 5.13480 5.16587 5.23885 5.27206 5.37280 5.47357 5.62204 5.63839 5.87649 5.89648 6.07795 6.23432 6.61387 6.83226 7.42607 7.89186 8.95045 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.002817 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.294709 B = 9935.529868 C =10331.106149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.085 3.915 3 N -0.470 5.470 4 C 0.161 3.839 5 C 0.254 3.746 6 H 0.136 0.864 7 C -0.164 4.164 8 N -1.113 6.113 9 S 2.623 3.377 10 C -0.659 4.659 11 O -0.999 6.999 12 O -0.978 6.978 13 N -0.313 5.313 14 N -0.363 5.363 15 C 0.370 3.630 16 N -0.455 5.455 17 C 0.034 3.966 18 C 0.242 3.758 19 H 0.002 0.998 20 C -0.156 4.156 21 C -0.525 4.525 22 H 0.073 0.927 23 C 0.012 3.988 24 N -0.919 5.919 25 Si 0.968 3.032 26 H -0.265 1.265 27 H -0.290 1.290 28 H -0.269 1.269 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.424 0.576 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.020 0.980 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.026 0.974 45 H 0.042 0.958 46 H 0.059 0.941 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 -15.573 17.302 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.036 4.036 3 N -0.166 5.166 4 C -0.110 4.110 5 C 0.144 3.856 6 H 0.154 0.846 7 C -0.223 4.223 8 N -0.870 5.870 9 S 2.718 3.282 10 C -0.812 4.812 11 O -0.990 6.990 12 O -0.968 6.968 13 N -0.152 5.152 14 N -0.208 5.208 15 C 0.012 3.988 16 N -0.178 5.178 17 C -0.112 4.112 18 C 0.136 3.864 19 H 0.020 0.980 20 C -0.216 4.216 21 C -0.564 4.564 22 H 0.091 0.909 23 C -0.187 4.187 24 N -0.558 5.558 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.216 1.216 28 H -0.194 1.194 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.259 0.741 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.173 0.827 41 H 0.039 0.961 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.774 -14.344 18.113 24.378 hybrid contribution 0.117 -0.097 -1.945 1.951 sum -7.657 -14.440 16.168 22.990 Atomic orbital electron populations 1.22358 0.92363 1.05173 1.03312 1.22439 0.97061 0.77054 1.07045 1.46450 1.50887 1.14750 1.04486 1.25095 1.04917 0.88582 0.92368 1.19045 0.87401 1.00691 0.78486 0.84609 1.22313 0.94996 1.01503 1.03511 1.55692 1.45041 1.39120 1.47171 1.04399 0.73544 0.77105 0.73111 1.30399 1.14705 1.20703 1.15424 1.93584 1.58394 1.70735 1.76296 1.93585 1.45814 1.86892 1.70528 1.73780 1.17707 1.20191 1.03525 1.74776 1.26114 1.16407 1.03470 1.23144 0.98688 0.87514 0.89433 1.59177 1.19815 1.43244 0.95540 1.22591 0.85235 1.00156 1.03254 1.18896 0.91551 0.85949 0.89965 0.98037 1.22248 0.98172 1.01317 0.99848 1.21306 1.40219 1.02325 0.92501 0.90899 1.25782 0.94755 0.94947 1.03238 1.70083 1.40255 1.10943 1.34496 0.85462 0.78720 0.77858 0.78677 1.18954 1.21579 1.19436 0.90522 0.93348 0.87092 0.88045 0.85067 0.92735 0.90087 0.88872 0.74139 0.84390 0.82859 0.82714 0.96131 0.89546 0.88571 0.95504 0.93903 0.92264 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.75 71.98 0.70 -1.21 16 2 C 0.08 1.25 5.75 86.38 0.50 1.75 16 3 N -0.47 -12.50 2.81 -514.85 -1.45 -13.94 16 4 C 0.16 4.33 6.89 137.64 0.95 5.28 16 5 C 0.25 4.32 3.08 44.24 0.14 4.46 16 6 H 0.14 1.00 6.10 -2.39 -0.01 0.99 16 7 C -0.16 -2.76 9.50 71.98 0.68 -2.08 16 8 N -1.11 -19.90 5.35 -172.51 -0.92 -20.82 16 9 S 2.62 39.90 6.02 -56.49 -0.34 39.56 16 10 C -0.66 -3.92 10.78 113.37 1.22 -2.70 16 11 O -1.00 -24.46 18.08 -127.65 -2.31 -26.77 16 12 O -0.98 -18.95 17.11 -127.65 -2.18 -21.13 16 13 N -0.31 -11.79 11.95 -49.53 -0.59 -12.38 16 14 N -0.36 -16.22 9.10 -58.01 -0.53 -16.75 16 15 C 0.37 14.28 6.69 260.12 1.74 16.02 16 16 N -0.45 -18.66 4.74 -711.00 -3.37 -22.03 16 17 C 0.03 1.15 8.11 127.69 1.04 2.18 16 18 C 0.24 12.48 2.05 44.17 0.09 12.57 16 19 H 0.00 0.10 8.05 -2.39 -0.02 0.08 16 20 C -0.16 -8.12 8.27 71.98 0.60 -7.53 16 21 C -0.53 -27.70 7.78 25.60 0.20 -27.50 16 22 H 0.07 3.62 6.83 -2.91 -0.02 3.60 16 23 C 0.01 0.66 5.30 84.65 0.45 1.11 16 24 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 25 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 29 H 0.08 0.67 7.66 -2.39 -0.02 0.66 16 30 H 0.05 0.78 6.21 -2.39 -0.01 0.76 16 31 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.10 1.66 7.65 -2.38 -0.02 1.64 16 33 H 0.13 0.79 7.34 -2.39 -0.02 0.77 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.13 7.66 -2.39 -0.02 1.11 16 36 H 0.09 1.43 7.42 -2.39 -0.02 1.41 16 37 H 0.42 9.03 8.60 -96.74 -0.83 8.20 16 38 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.15 0.07 7.44 -2.39 -0.02 0.06 16 41 H 0.02 0.72 6.88 -2.39 -0.02 0.70 16 42 H 0.09 3.09 6.26 -2.39 -0.01 3.08 16 43 H 0.10 2.35 4.60 -2.38 -0.01 2.34 16 44 H 0.03 1.29 6.64 -2.39 -0.02 1.27 16 45 H 0.04 2.22 5.61 -2.39 -0.01 2.21 16 46 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 47 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -83.91 379.19 -0.95 -84.85 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.18 Total: 16.14 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 8.30 Total: 2.36 kcal Atomic # 7 Polarization: -132.55 SS G_CDS: -6.62 Total: -139.17 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -4.49 Total: -47.90 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 39.90 SS G_CDS: -0.34 Total: 39.56 kcal Total: -83.91 -0.95 -84.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358661842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.945 kcal (2) G-P(sol) polarization free energy of solvation -83.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds