Wall clock time and date at job start Wed Apr 1 2020 03:51:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.34490 * 125.78767 * 2 1
4 4 C 1.37896 * 107.41550 * 180.02562 * 3 2 1
5 5 C 1.47620 * 126.38521 * 179.97438 * 4 3 2
6 6 N 1.32230 * 126.68461 * 179.97438 * 5 4 3
7 7 C 1.34226 * 105.52723 * 180.02562 * 6 5 4
8 8 C 1.50700 * 126.18235 * 180.02562 * 7 6 5
9 9 H 1.09002 * 109.44802 * 335.80820 * 8 7 6
10 10 C 1.54861 * 109.44905 * 215.88454 * 8 7 6
11 11 C 1.47099 * 110.32282 * 168.69415 * 10 8 7
12 12 C 1.52568 * 114.32235 * 62.80159 * 11 10 8
13 13 C 1.50878 * 109.35848 * 274.98691 * 12 11 10
14 14 C 1.54292 * 110.23574 * 91.80183 * 13 12 11
15 15 N 1.44581 * 109.44699 * 95.75457 * 8 7 6
16 16 C 1.34773 * 118.64632 * 30.74664 * 15 8 7
17 17 O 1.21690 * 119.99656 * 353.82052 * 16 15 8
18 18 C 1.46369 * 120.00231 * 173.82324 * 16 15 8
19 19 H 1.08005 * 119.99837 * 16.14460 * 18 16 15
20 20 C 1.40042 * 120.00294 * 196.14655 * 18 16 15
21 21 N 1.30678 * 119.99813 * 8.12836 * 20 18 16
22 22 Si 1.86800 * 120.00216 * 188.12632 * 20 18 16
23 23 H 1.48501 * 109.47083 * 84.98785 * 22 20 18
24 24 H 1.48492 * 109.47271 * 324.98466 * 22 20 18
25 25 H 1.48507 * 109.47392 * 204.98472 * 22 20 18
26 26 N 1.30031 * 107.62991 * 0.26452 * 7 6 5
27 27 O 1.21280 * 110.51896 * 359.54144 * 26 7 6
28 28 C 1.41194 * 107.22654 * 0.22816 * 4 3 2
29 29 N 1.30508 * 108.06717 * 359.61635 * 28 4 3
30 30 H 1.09006 * 109.47436 * 90.00027 * 1 2 3
31 31 H 1.09000 * 109.47014 * 209.99831 * 1 2 3
32 32 H 1.08996 * 109.47453 * 330.00069 * 1 2 3
33 33 H 1.08004 * 126.28982 * 0.02562 * 3 2 1
34 34 H 1.08996 * 109.32870 * 288.95509 * 10 8 7
35 35 H 1.09003 * 109.32581 * 48.43502 * 10 8 7
36 36 H 1.08998 * 108.51346 * 184.05782 * 11 10 8
37 37 H 1.08997 * 108.50795 * 301.70788 * 11 10 8
38 38 H 1.08993 * 109.49106 * 34.95498 * 12 11 10
39 39 H 1.09005 * 109.48547 * 155.02445 * 12 11 10
40 40 H 1.08999 * 109.36357 * 212.08000 * 13 12 11
41 41 H 1.09001 * 109.37015 * 331.69977 * 13 12 11
42 42 H 1.08999 * 109.14571 * 199.01291 * 14 13 12
43 43 H 1.09007 * 108.96036 * 80.26636 * 14 13 12
44 44 H 0.97001 * 120.00117 * 179.97438 * 21 20 18
45 45 H 1.08000 * 125.96644 * 179.75383 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.2514 1.0910 0.0000
4 6 3.5601 0.6563 -0.0006
5 6 4.7657 1.5082 -0.0013
6 7 6.0228 1.0980 -0.0014
7 6 6.7656 2.2159 -0.0016
8 6 8.2710 2.2838 -0.0023
9 1 8.6760 1.3635 0.4185
10 6 8.7333 3.4888 0.8535
11 6 10.1835 3.4210 1.0903
12 6 11.0315 3.5089 -0.1749
13 6 11.1616 2.1357 -0.7863
14 6 10.0397 1.9031 -1.8196
15 7 8.7451 2.4423 -1.3590
16 6 7.9706 3.1049 -2.2408
17 8 6.8503 3.4571 -1.9220
18 6 8.4770 3.4007 -3.5818
19 1 9.3440 2.8786 -3.9591
20 6 7.8375 4.3609 -4.3758
21 7 6.8910 5.1043 -3.8668
22 14 8.3374 4.5788 -6.1624
23 1 7.6038 3.6002 -7.0046
24 1 9.7986 4.3520 -6.2988
25 1 8.0072 5.9576 -6.6043
26 7 5.9513 3.2297 0.0041
27 8 4.7996 2.8500 -0.0014
28 6 3.5319 -0.7553 -0.0063
29 7 2.2833 -1.1352 -0.0007
30 1 -0.3634 0.0000 -1.0277
31 1 -0.3633 -0.8900 0.5138
32 1 -0.3634 0.8899 0.5138
33 1 1.9190 2.1186 0.0004
34 1 8.4961 4.4151 0.3303
35 1 8.2105 3.4737 1.8099
36 1 10.4646 4.2393 1.7531
37 1 10.4087 2.4791 1.5905
38 1 10.5529 4.1805 -0.8876
39 1 12.0212 3.8903 0.0766
40 1 12.1302 2.0497 -1.2788
41 1 11.0889 1.3824 -0.0019
42 1 9.9341 0.8330 -1.9978
43 1 10.3134 2.3908 -2.7553
44 1 6.4483 5.7696 -4.4166
45 1 4.3931 -1.4069 -0.0119
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000364966445.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:51:43
Heat of formation + Delta-G solvation = 141.942512 kcal
Electronic energy + Delta-G solvation = -31212.909342 eV
Core-core repulsion = 27043.988786 eV
Total energy + Delta-G solvation = -4168.920556 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-44.43390 -41.18632 -39.08707 -36.00246 -34.93739 -33.77584 -32.80125 -32.74463
-32.15006 -31.31777 -29.48780 -27.17525 -27.02947 -25.59549 -24.99885 -23.41334
-22.38489 -21.32438 -20.83080 -20.47905 -19.89642 -18.65393 -17.62399 -17.08207
-16.63456 -15.98570 -15.61390 -15.44466 -15.23815 -14.91234 -14.73961 -14.21300
-14.15340 -13.69924 -13.22648 -13.16149 -13.01861 -12.97192 -12.83289 -12.60317
-12.32471 -11.89764 -11.69116 -11.33842 -11.30609 -11.10633 -10.89951 -10.86423
-10.83676 -10.56635 -10.35214 -10.33150 -10.19257 -10.10548 -9.97421 -9.78741
-9.72497 -9.60872 -8.84083 -8.22148 -7.28829 -7.05377 -6.21470 -4.61575
1.40189 2.05759 2.27345 2.93690 3.13486 3.20549 3.21774 3.42832
3.66073 4.09431 4.13991 4.48031 4.53530 4.64747 4.75067 4.89448
4.97249 5.10295 5.15054 5.17642 5.28286 5.37716 5.44529 5.58794
5.64359 5.74530 5.77451 5.84031 6.05540 6.10159 6.17888 6.29725
6.34511 6.42995 6.45217 6.53283 6.58616 6.67740 6.71277 6.73878
6.82280 6.90331 6.98985 7.44692 7.51838 7.62162 8.14518 8.32210
9.02794 9.25032 9.35481 10.56360 10.73344
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.010326 B = 0.003901 C = 0.003133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2710.860397 B = 7176.784795 C = 8936.139746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.100 3.900
2 N -0.368 5.368
3 C 0.099 3.901
4 C -0.161 4.161
5 C 0.217 3.783
6 N -0.478 5.478
7 C 0.183 3.817
8 C 0.258 3.742
9 H 0.082 0.918
10 C -0.124 4.124
11 C -0.107 4.107
12 C -0.116 4.116
13 C -0.131 4.131
14 C 0.123 3.877
15 N -0.632 5.632
16 C 0.560 3.440
17 O -0.563 6.563
18 C -0.549 4.549
19 H 0.073 0.927
20 C 0.094 3.906
21 N -0.770 5.770
22 Si 0.903 3.097
23 H -0.272 1.272
24 H -0.265 1.265
25 H -0.281 1.281
26 N -0.298 5.298
27 O 0.085 5.915
28 C 0.103 3.897
29 N -0.301 5.301
30 H 0.078 0.922
31 H 0.091 0.909
32 H 0.091 0.909
33 H 0.189 0.811
34 H 0.075 0.925
35 H 0.058 0.942
36 H 0.053 0.947
37 H 0.052 0.948
38 H 0.077 0.923
39 H 0.053 0.947
40 H 0.065 0.935
41 H 0.055 0.945
42 H 0.040 0.960
43 H 0.095 0.905
44 H 0.269 0.731
45 H 0.195 0.805
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.745 -6.995 9.041 12.377
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.041 4.041
2 N -0.147 5.147
3 C -0.053 4.053
4 C -0.175 4.175
5 C -0.001 4.001
6 N -0.214 5.214
7 C -0.090 4.090
8 C 0.150 3.850
9 H 0.100 0.900
10 C -0.163 4.163
11 C -0.145 4.145
12 C -0.153 4.153
13 C -0.169 4.169
14 C -0.001 4.001
15 N -0.370 5.370
16 C 0.365 3.635
17 O -0.444 6.444
18 C -0.585 4.585
19 H 0.090 0.910
20 C -0.126 4.126
21 N -0.398 5.398
22 Si 0.728 3.272
23 H -0.197 1.197
24 H -0.190 1.190
25 H -0.206 1.206
26 N 0.000 5.000
27 O 0.019 5.981
28 C -0.085 4.085
29 N -0.122 5.122
30 H 0.097 0.903
31 H 0.110 0.890
32 H 0.109 0.891
33 H 0.206 0.794
34 H 0.094 0.906
35 H 0.077 0.923
36 H 0.072 0.928
37 H 0.071 0.929
38 H 0.095 0.905
39 H 0.072 0.928
40 H 0.083 0.917
41 H 0.074 0.926
42 H 0.058 0.942
43 H 0.113 0.887
44 H 0.079 0.921
45 H 0.212 0.788
Dipole moment (debyes) X Y Z Total
from point charges -5.778 -7.097 9.197 12.974
hybrid contribution 0.703 0.817 -1.234 1.639
sum -5.074 -6.280 7.962 11.339
Atomic orbital electron populations
1.21942 0.73511 1.04771 1.03829 1.48253 1.07042 1.03753 1.55697
1.22937 0.89984 0.93919 0.98482 1.17344 0.87658 0.91672 1.20791
1.24827 0.92357 0.82530 1.00408 1.71855 0.99795 1.28621 1.21139
1.24995 0.99179 0.82978 1.01852 1.18548 0.82770 0.97649 0.86048
0.89966 1.21173 0.95847 1.00058 0.99264 1.20373 0.95216 1.01154
0.97747 1.21039 0.98777 0.97914 0.97589 1.21858 0.98691 0.97285
0.99102 1.21800 0.82909 0.97352 0.97995 1.47802 1.20008 1.61160
1.08036 1.18293 0.84224 0.76016 0.84941 1.90658 1.19819 1.55160
1.78749 1.20948 1.15025 1.23843 0.98697 0.90953 1.25642 0.93581
0.94260 0.99140 1.69937 1.18416 1.15326 1.36153 0.86469 0.79671
0.77802 0.83303 1.19730 1.18967 1.20611 1.74661 0.88226 1.22118
1.14954 1.85369 1.25041 1.22284 1.65410 1.23971 0.94994 0.93138
0.96387 1.77226 1.01535 1.07764 1.25663 0.90321 0.89019 0.89081
0.79362 0.90583 0.92290 0.92835 0.92883 0.90464 0.92814 0.91670
0.92600 0.94206 0.88668 0.92079 0.78804
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.62 11.45 59.84 0.69 1.30 16
2 N -0.37 -4.17 3.99 -67.58 -0.27 -4.43 16
3 C 0.10 1.22 11.50 -16.51 -0.19 1.03 16
4 C -0.16 -2.54 6.12 -105.07 -0.64 -3.19 16
5 C 0.22 4.32 8.28 -13.88 -0.11 4.20 16
6 N -0.48 -10.38 11.59 -10.17 -0.12 -10.50 16
7 C 0.18 4.23 5.27 -156.55 -0.82 3.40 16
8 C 0.26 5.35 2.54 -69.13 -0.18 5.17 16
9 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16
10 C -0.12 -2.31 4.81 -28.58 -0.14 -2.45 16
11 C -0.11 -1.63 5.16 -29.78 -0.15 -1.79 16
12 C -0.12 -1.80 5.51 -28.02 -0.15 -1.95 16
13 C -0.13 -1.93 5.71 -27.12 -0.15 -2.08 16
14 C 0.12 2.29 6.04 -2.76 -0.02 2.27 16
15 N -0.63 -14.31 2.19 -167.67 -0.37 -14.68 16
16 C 0.56 15.60 7.23 -12.99 -0.09 15.50 16
17 O -0.56 -17.30 10.66 0.41 0.00 -17.30 16
18 C -0.55 -15.24 8.62 -35.64 -0.31 -15.55 16
19 H 0.07 1.85 5.83 -52.48 -0.31 1.54 16
20 C 0.09 2.59 5.46 -17.37 -0.09 2.50 16
21 N -0.77 -22.87 12.07 55.55 0.67 -22.20 16
22 Si 0.90 20.27 29.57 -169.99 -5.03 15.24 16
23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
24 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16
25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
26 N -0.30 -7.30 9.06 31.21 0.28 -7.02 16
27 O 0.09 1.88 11.34 11.80 0.13 2.02 16
28 C 0.10 1.49 12.01 -16.99 -0.20 1.29 16
29 N -0.30 -4.15 12.50 30.85 0.39 -3.77 16
30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16
33 H 0.19 1.75 8.06 -52.48 -0.42 1.32 16
34 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16
35 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16
36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
37 H 0.05 0.72 7.35 -51.93 -0.38 0.34 16
38 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16
39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
41 H 0.06 0.76 7.31 -51.93 -0.38 0.38 16
42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.10 1.88 5.29 -51.92 -0.27 1.61 16
44 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16
45 H 0.20 2.52 8.06 -52.49 -0.42 2.10 16
LS Contribution 368.98 15.07 5.56 5.56
Total: -1.00 -37.31 368.98 -7.26 -44.56
By element:
Atomic # 1 Polarization: 8.78 SS G_CDS: -5.93 Total: 2.85 kcal
Atomic # 6 Polarization: 12.25 SS G_CDS: -2.58 Total: 9.67 kcal
Atomic # 7 Polarization: -63.18 SS G_CDS: 0.58 Total: -62.60 kcal
Atomic # 8 Polarization: -15.42 SS G_CDS: 0.14 Total: -15.28 kcal
Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -37.31 -7.26 -44.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000364966445.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 186.504 kcal
(2) G-P(sol) polarization free energy of solvation -37.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) 141.943 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds