Wall clock time and date at job start Wed Apr 1 2020 03:51:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.34490 * 125.78767 * 2 1
4 4 C 1.37896 * 107.41550 * 180.02562 * 3 2 1
5 5 C 1.47620 * 126.38521 * 179.97438 * 4 3 2
6 6 N 1.32230 * 126.68461 * 179.97438 * 5 4 3
7 7 C 1.34226 * 105.52723 * 180.02562 * 6 5 4
8 8 C 1.50700 * 126.18235 * 180.02562 * 7 6 5
9 9 H 1.09002 * 109.44802 * 335.80820 * 8 7 6
10 10 C 1.54861 * 109.44905 * 215.88454 * 8 7 6
11 11 C 1.47099 * 110.32282 * 168.69415 * 10 8 7
12 12 C 1.52568 * 114.32235 * 62.80159 * 11 10 8
13 13 C 1.50878 * 109.35848 * 274.98691 * 12 11 10
14 14 C 1.54292 * 110.23574 * 91.80183 * 13 12 11
15 15 N 1.44581 * 109.44699 * 95.75457 * 8 7 6
16 16 C 1.34773 * 118.64632 * 30.74664 * 15 8 7
17 17 O 1.21690 * 119.99656 * 353.82052 * 16 15 8
18 18 C 1.46369 * 120.00231 * 173.82324 * 16 15 8
19 19 H 1.08005 * 119.99837 * 16.14460 * 18 16 15
20 20 C 1.40042 * 120.00294 * 196.14655 * 18 16 15
21 21 N 1.30678 * 119.99813 * 8.12836 * 20 18 16
22 22 Si 1.86800 * 120.00216 * 188.12632 * 20 18 16
23 23 H 1.48501 * 109.47083 * 84.98785 * 22 20 18
24 24 H 1.48492 * 109.47271 * 324.98466 * 22 20 18
25 25 H 1.48507 * 109.47392 * 204.98472 * 22 20 18
26 26 N 1.30031 * 107.62991 * 0.26452 * 7 6 5
27 27 O 1.21280 * 110.51896 * 359.54144 * 26 7 6
28 28 C 1.41194 * 107.22654 * 0.22816 * 4 3 2
29 29 N 1.30508 * 108.06717 * 359.61635 * 28 4 3
30 30 H 1.09006 * 109.47436 * 90.00027 * 1 2 3
31 31 H 1.09000 * 109.47014 * 209.99831 * 1 2 3
32 32 H 1.08996 * 109.47453 * 330.00069 * 1 2 3
33 33 H 1.08004 * 126.28982 * 0.02562 * 3 2 1
34 34 H 1.08996 * 109.32870 * 288.95509 * 10 8 7
35 35 H 1.09003 * 109.32581 * 48.43502 * 10 8 7
36 36 H 1.08998 * 108.51346 * 184.05782 * 11 10 8
37 37 H 1.08997 * 108.50795 * 301.70788 * 11 10 8
38 38 H 1.08993 * 109.49106 * 34.95498 * 12 11 10
39 39 H 1.09005 * 109.48547 * 155.02445 * 12 11 10
40 40 H 1.08999 * 109.36357 * 212.08000 * 13 12 11
41 41 H 1.09001 * 109.37015 * 331.69977 * 13 12 11
42 42 H 1.08999 * 109.14571 * 199.01291 * 14 13 12
43 43 H 1.09007 * 108.96036 * 80.26636 * 14 13 12
44 44 H 0.97001 * 120.00117 * 179.97438 * 21 20 18
45 45 H 1.08000 * 125.96644 * 179.75383 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.2514 1.0910 0.0000
4 6 3.5601 0.6563 -0.0006
5 6 4.7657 1.5082 -0.0013
6 7 6.0228 1.0980 -0.0014
7 6 6.7656 2.2159 -0.0016
8 6 8.2710 2.2838 -0.0023
9 1 8.6760 1.3635 0.4185
10 6 8.7333 3.4888 0.8535
11 6 10.1835 3.4210 1.0903
12 6 11.0315 3.5089 -0.1749
13 6 11.1616 2.1357 -0.7863
14 6 10.0397 1.9031 -1.8196
15 7 8.7451 2.4423 -1.3590
16 6 7.9706 3.1049 -2.2408
17 8 6.8503 3.4571 -1.9220
18 6 8.4770 3.4007 -3.5818
19 1 9.3440 2.8786 -3.9591
20 6 7.8375 4.3609 -4.3758
21 7 6.8910 5.1043 -3.8668
22 14 8.3374 4.5788 -6.1624
23 1 7.6038 3.6002 -7.0046
24 1 9.7986 4.3520 -6.2988
25 1 8.0072 5.9576 -6.6043
26 7 5.9513 3.2297 0.0041
27 8 4.7996 2.8500 -0.0014
28 6 3.5319 -0.7553 -0.0063
29 7 2.2833 -1.1352 -0.0007
30 1 -0.3634 0.0000 -1.0277
31 1 -0.3633 -0.8900 0.5138
32 1 -0.3634 0.8899 0.5138
33 1 1.9190 2.1186 0.0004
34 1 8.4961 4.4151 0.3303
35 1 8.2105 3.4737 1.8099
36 1 10.4646 4.2393 1.7531
37 1 10.4087 2.4791 1.5905
38 1 10.5529 4.1805 -0.8876
39 1 12.0212 3.8903 0.0766
40 1 12.1302 2.0497 -1.2788
41 1 11.0889 1.3824 -0.0019
42 1 9.9341 0.8330 -1.9978
43 1 10.3134 2.3908 -2.7553
44 1 6.4483 5.7696 -4.4166
45 1 4.3931 -1.4069 -0.0119
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000364966445.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:51:42
Heat of formation + Delta-G solvation = 114.977952 kcal
Electronic energy + Delta-G solvation = -31214.078613 eV
Core-core repulsion = 27043.988786 eV
Total energy + Delta-G solvation = -4170.089827 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-46.10521 -42.23406 -40.76538 -37.78153 -36.55274 -35.02050 -34.57850 -34.32754
-33.72743 -32.72789 -30.75186 -29.03222 -27.91240 -27.29894 -26.57245 -24.90429
-23.83535 -22.95531 -21.98588 -21.82059 -21.20175 -20.32903 -19.06294 -18.79856
-18.06005 -17.78722 -17.29421 -16.87243 -16.46988 -16.34699 -16.01770 -15.88440
-15.26259 -15.09556 -14.85557 -14.53532 -14.45226 -14.13321 -13.95224 -13.70425
-13.60091 -13.37491 -13.25291 -13.03486 -12.99328 -12.83791 -12.64511 -12.46797
-12.24974 -12.06703 -12.02944 -11.79938 -11.69613 -11.57309 -11.43751 -11.27466
-11.17576 -10.91636 -10.58876 -9.67344 -9.09029 -8.94882 -8.27397 -6.77416
0.13823 0.85863 1.34361 1.34938 1.39079 1.41697 1.49787 1.99870
2.21306 2.21727 2.49291 2.75509 2.92531 3.36345 3.56181 3.71048
3.81200 3.86058 4.02120 4.08915 4.15047 4.16186 4.30364 4.44176
4.46818 4.50187 4.62406 4.64774 4.73792 4.74704 4.81336 4.95243
4.99336 5.03235 5.09669 5.22213 5.29878 5.31092 5.35077 5.37846
5.39018 5.45978 5.59781 5.79028 5.84539 6.18213 6.42783 6.45645
6.91091 7.39171 7.62218 8.51231 8.68645
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.010326 B = 0.003901 C = 0.003133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2710.860397 B = 7176.784795 C = 8936.139746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.356 5.356
3 C 0.124 3.876
4 C -0.207 4.207
5 C 0.233 3.767
6 N -0.502 5.502
7 C 0.172 3.828
8 C 0.251 3.749
9 H 0.107 0.893
10 C -0.109 4.109
11 C -0.107 4.107
12 C -0.113 4.113
13 C -0.120 4.120
14 C 0.115 3.885
15 N -0.630 5.630
16 C 0.542 3.458
17 O -0.600 6.600
18 C -0.575 4.575
19 H 0.088 0.912
20 C 0.038 3.962
21 N -0.824 5.824
22 Si 0.985 3.015
23 H -0.269 1.269
24 H -0.246 1.246
25 H -0.275 1.275
26 N -0.339 5.339
27 O 0.072 5.928
28 C 0.101 3.899
29 N -0.314 5.314
30 H 0.092 0.908
31 H 0.103 0.897
32 H 0.123 0.877
33 H 0.221 0.779
34 H 0.026 0.974
35 H 0.067 0.933
36 H 0.070 0.930
37 H 0.082 0.918
38 H 0.031 0.969
39 H 0.084 0.916
40 H 0.094 0.906
41 H 0.078 0.922
42 H 0.051 0.949
43 H 0.078 0.922
44 H 0.271 0.729
45 H 0.199 0.801
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.182 -8.344 9.207 13.110
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 N -0.134 5.134
3 C -0.030 4.030
4 C -0.221 4.221
5 C 0.016 3.984
6 N -0.237 5.237
7 C -0.102 4.102
8 C 0.144 3.856
9 H 0.124 0.876
10 C -0.148 4.148
11 C -0.144 4.144
12 C -0.151 4.151
13 C -0.158 4.158
14 C -0.007 4.007
15 N -0.367 5.367
16 C 0.347 3.653
17 O -0.484 6.484
18 C -0.611 4.611
19 H 0.106 0.894
20 C -0.177 4.177
21 N -0.453 5.453
22 Si 0.806 3.194
23 H -0.194 1.194
24 H -0.169 1.169
25 H -0.199 1.199
26 N -0.044 5.044
27 O 0.009 5.991
28 C -0.087 4.087
29 N -0.135 5.135
30 H 0.111 0.889
31 H 0.121 0.879
32 H 0.142 0.858
33 H 0.237 0.763
34 H 0.045 0.955
35 H 0.085 0.915
36 H 0.089 0.911
37 H 0.101 0.899
38 H 0.050 0.950
39 H 0.102 0.898
40 H 0.112 0.888
41 H 0.097 0.903
42 H 0.069 0.931
43 H 0.096 0.904
44 H 0.081 0.919
45 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges -5.213 -8.506 9.392 13.702
hybrid contribution 0.313 1.136 -1.219 1.695
sum -4.901 -7.370 8.173 12.047
Atomic orbital electron populations
1.22465 0.70213 1.07041 1.05462 1.48747 1.08724 1.02726 1.53227
1.23385 0.88880 0.95424 0.95319 1.17537 0.87667 0.91935 1.25002
1.25552 0.93315 0.82078 0.97489 1.71843 1.00509 1.28325 1.23029
1.25473 1.00258 0.83091 1.01350 1.18900 0.81887 0.99387 0.85417
0.87563 1.21054 0.98598 0.96772 0.98406 1.20389 0.92369 1.03433
0.98232 1.21023 0.99859 0.97608 0.96611 1.21823 0.98065 0.97245
0.98658 1.22024 0.82452 0.97387 0.98839 1.47667 1.20803 1.60101
1.08151 1.18639 0.84357 0.76368 0.85979 1.90641 1.21467 1.56627
1.79628 1.21454 1.15836 1.24324 0.99512 0.89397 1.26777 0.93122
0.93408 1.04384 1.70111 1.20368 1.16492 1.38346 0.85213 0.80164
0.77825 0.76224 1.19444 1.16919 1.19946 1.74598 0.89102 1.23448
1.17207 1.85290 1.24376 1.23310 1.66164 1.24069 0.95655 0.92709
0.96238 1.77200 1.01343 1.08937 1.26034 0.88924 0.87886 0.85820
0.76291 0.95468 0.91451 0.91103 0.89943 0.94988 0.89754 0.88766
0.90334 0.93114 0.90389 0.91934 0.78388
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.78 11.45 127.77 1.46 2.25 16
2 N -0.36 -7.29 3.99 -367.73 -1.47 -8.76 16
3 C 0.12 2.89 11.50 84.20 0.97 3.86 16
4 C -0.21 -6.60 6.12 -20.16 -0.12 -6.72 16
5 C 0.23 9.66 8.28 87.23 0.72 10.38 16
6 N -0.50 -22.64 11.59 -302.64 -3.51 -26.15 16
7 C 0.17 8.28 5.27 138.52 0.73 9.01 16
8 C 0.25 10.64 2.54 45.24 0.12 10.75 16
9 H 0.11 3.90 8.06 -2.39 -0.02 3.88 16
10 C -0.11 -4.15 4.81 29.39 0.14 -4.00 16
11 C -0.11 -3.06 5.16 28.62 0.15 -2.92 16
12 C -0.11 -3.33 5.51 29.76 0.16 -3.17 16
13 C -0.12 -3.20 5.71 30.34 0.17 -3.02 16
14 C 0.12 4.23 6.04 86.61 0.52 4.75 16
15 N -0.63 -29.33 2.19 -802.61 -1.76 -31.09 16
16 C 0.54 31.66 7.23 86.36 0.62 32.29 16
17 O -0.60 -39.07 10.66 0.26 0.00 -39.07 16
18 C -0.57 -33.02 8.62 24.83 0.21 -32.80 16
19 H 0.09 4.58 5.83 -2.91 -0.02 4.57 16
20 C 0.04 2.16 5.46 85.30 0.47 2.62 16
21 N -0.82 -51.24 12.07 21.83 0.26 -50.98 16
22 Si 0.99 42.38 29.57 68.60 2.03 44.41 16
23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16
24 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16
25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16
26 N -0.34 -17.61 9.06 -58.50 -0.53 -18.14 16
27 O 0.07 3.34 11.34 74.04 0.84 4.18 16
28 C 0.10 2.92 12.01 85.62 1.03 3.95 16
29 N -0.31 -8.31 12.50 -56.31 -0.70 -9.02 16
30 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16
31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16
32 H 0.12 0.37 8.14 -2.39 -0.02 0.36 16
33 H 0.22 3.59 8.06 -2.91 -0.02 3.56 16
34 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16
35 H 0.07 2.40 8.10 -2.39 -0.02 2.38 16
36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
37 H 0.08 1.93 7.35 -2.39 -0.02 1.92 16
38 H 0.03 1.23 7.49 -2.39 -0.02 1.21 16
39 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16
40 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16
41 H 0.08 1.79 7.31 -2.39 -0.02 1.77 16
42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
43 H 0.08 3.10 5.29 -2.38 -0.01 3.09 16
44 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16
45 H 0.20 5.29 8.06 -2.91 -0.02 5.27 16
Total: -1.00 -88.43 368.98 3.55 -84.88
By element:
Atomic # 1 Polarization: 21.47 SS G_CDS: 1.03 Total: 22.50 kcal
Atomic # 6 Polarization: 19.87 SS G_CDS: 7.36 Total: 27.23 kcal
Atomic # 7 Polarization: -136.42 SS G_CDS: -7.71 Total: -144.12 kcal
Atomic # 8 Polarization: -35.73 SS G_CDS: 0.84 Total: -34.89 kcal
Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal
Total: -88.43 3.55 -84.88 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000364966445.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 199.853 kcal
(2) G-P(sol) polarization free energy of solvation -88.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.427 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.875 kcal
(6) G-S(sol) free energy of system = (1) + (5) 114.978 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds