Wall clock time and date at job start Wed Apr 1 2020 03:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34490 * 125.78767 * 2 1 4 4 C 1.37896 * 107.41550 * 180.02562 * 3 2 1 5 5 C 1.47620 * 126.38521 * 179.97438 * 4 3 2 6 6 N 1.32230 * 126.68461 * 179.97438 * 5 4 3 7 7 C 1.34226 * 105.52723 * 180.02562 * 6 5 4 8 8 C 1.50700 * 126.18235 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.44802 * 335.80820 * 8 7 6 10 10 C 1.54861 * 109.44905 * 215.88454 * 8 7 6 11 11 C 1.47099 * 110.32282 * 168.69415 * 10 8 7 12 12 C 1.52568 * 114.32235 * 62.80159 * 11 10 8 13 13 C 1.50878 * 109.35848 * 274.98691 * 12 11 10 14 14 C 1.54292 * 110.23574 * 91.80183 * 13 12 11 15 15 N 1.44581 * 109.44699 * 95.75457 * 8 7 6 16 16 C 1.34773 * 118.64632 * 30.74664 * 15 8 7 17 17 O 1.21690 * 119.99656 * 353.82052 * 16 15 8 18 18 C 1.46369 * 120.00231 * 173.82324 * 16 15 8 19 19 H 1.08005 * 119.99837 * 16.14460 * 18 16 15 20 20 C 1.40042 * 120.00294 * 196.14655 * 18 16 15 21 21 N 1.30678 * 119.99813 * 8.12836 * 20 18 16 22 22 Si 1.86800 * 120.00216 * 188.12632 * 20 18 16 23 23 H 1.48501 * 109.47083 * 84.98785 * 22 20 18 24 24 H 1.48492 * 109.47271 * 324.98466 * 22 20 18 25 25 H 1.48507 * 109.47392 * 204.98472 * 22 20 18 26 26 N 1.30031 * 107.62991 * 0.26452 * 7 6 5 27 27 O 1.21280 * 110.51896 * 359.54144 * 26 7 6 28 28 C 1.41194 * 107.22654 * 0.22816 * 4 3 2 29 29 N 1.30508 * 108.06717 * 359.61635 * 28 4 3 30 30 H 1.09006 * 109.47436 * 90.00027 * 1 2 3 31 31 H 1.09000 * 109.47014 * 209.99831 * 1 2 3 32 32 H 1.08996 * 109.47453 * 330.00069 * 1 2 3 33 33 H 1.08004 * 126.28982 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.32870 * 288.95509 * 10 8 7 35 35 H 1.09003 * 109.32581 * 48.43502 * 10 8 7 36 36 H 1.08998 * 108.51346 * 184.05782 * 11 10 8 37 37 H 1.08997 * 108.50795 * 301.70788 * 11 10 8 38 38 H 1.08993 * 109.49106 * 34.95498 * 12 11 10 39 39 H 1.09005 * 109.48547 * 155.02445 * 12 11 10 40 40 H 1.08999 * 109.36357 * 212.08000 * 13 12 11 41 41 H 1.09001 * 109.37015 * 331.69977 * 13 12 11 42 42 H 1.08999 * 109.14571 * 199.01291 * 14 13 12 43 43 H 1.09007 * 108.96036 * 80.26636 * 14 13 12 44 44 H 0.97001 * 120.00117 * 179.97438 * 21 20 18 45 45 H 1.08000 * 125.96644 * 179.75383 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2514 1.0910 0.0000 4 6 3.5601 0.6563 -0.0006 5 6 4.7657 1.5082 -0.0013 6 7 6.0228 1.0980 -0.0014 7 6 6.7656 2.2159 -0.0016 8 6 8.2710 2.2838 -0.0023 9 1 8.6760 1.3635 0.4185 10 6 8.7333 3.4888 0.8535 11 6 10.1835 3.4210 1.0903 12 6 11.0315 3.5089 -0.1749 13 6 11.1616 2.1357 -0.7863 14 6 10.0397 1.9031 -1.8196 15 7 8.7451 2.4423 -1.3590 16 6 7.9706 3.1049 -2.2408 17 8 6.8503 3.4571 -1.9220 18 6 8.4770 3.4007 -3.5818 19 1 9.3440 2.8786 -3.9591 20 6 7.8375 4.3609 -4.3758 21 7 6.8910 5.1043 -3.8668 22 14 8.3374 4.5788 -6.1624 23 1 7.6038 3.6002 -7.0046 24 1 9.7986 4.3520 -6.2988 25 1 8.0072 5.9576 -6.6043 26 7 5.9513 3.2297 0.0041 27 8 4.7996 2.8500 -0.0014 28 6 3.5319 -0.7553 -0.0063 29 7 2.2833 -1.1352 -0.0007 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.9190 2.1186 0.0004 34 1 8.4961 4.4151 0.3303 35 1 8.2105 3.4737 1.8099 36 1 10.4646 4.2393 1.7531 37 1 10.4087 2.4791 1.5905 38 1 10.5529 4.1805 -0.8876 39 1 12.0212 3.8903 0.0766 40 1 12.1302 2.0497 -1.2788 41 1 11.0889 1.3824 -0.0019 42 1 9.9341 0.8330 -1.9978 43 1 10.3134 2.3908 -2.7553 44 1 6.4483 5.7696 -4.4166 45 1 4.3931 -1.4069 -0.0119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364966445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:42 Heat of formation + Delta-G solvation = 114.977952 kcal Electronic energy + Delta-G solvation = -31214.078613 eV Core-core repulsion = 27043.988786 eV Total energy + Delta-G solvation = -4170.089827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.10521 -42.23406 -40.76538 -37.78153 -36.55274 -35.02050 -34.57850 -34.32754 -33.72743 -32.72789 -30.75186 -29.03222 -27.91240 -27.29894 -26.57245 -24.90429 -23.83535 -22.95531 -21.98588 -21.82059 -21.20175 -20.32903 -19.06294 -18.79856 -18.06005 -17.78722 -17.29421 -16.87243 -16.46988 -16.34699 -16.01770 -15.88440 -15.26259 -15.09556 -14.85557 -14.53532 -14.45226 -14.13321 -13.95224 -13.70425 -13.60091 -13.37491 -13.25291 -13.03486 -12.99328 -12.83791 -12.64511 -12.46797 -12.24974 -12.06703 -12.02944 -11.79938 -11.69613 -11.57309 -11.43751 -11.27466 -11.17576 -10.91636 -10.58876 -9.67344 -9.09029 -8.94882 -8.27397 -6.77416 0.13823 0.85863 1.34361 1.34938 1.39079 1.41697 1.49787 1.99870 2.21306 2.21727 2.49291 2.75509 2.92531 3.36345 3.56181 3.71048 3.81200 3.86058 4.02120 4.08915 4.15047 4.16186 4.30364 4.44176 4.46818 4.50187 4.62406 4.64774 4.73792 4.74704 4.81336 4.95243 4.99336 5.03235 5.09669 5.22213 5.29878 5.31092 5.35077 5.37846 5.39018 5.45978 5.59781 5.79028 5.84539 6.18213 6.42783 6.45645 6.91091 7.39171 7.62218 8.51231 8.68645 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.003901 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.860397 B = 7176.784795 C = 8936.139746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.356 5.356 3 C 0.124 3.876 4 C -0.207 4.207 5 C 0.233 3.767 6 N -0.502 5.502 7 C 0.172 3.828 8 C 0.251 3.749 9 H 0.107 0.893 10 C -0.109 4.109 11 C -0.107 4.107 12 C -0.113 4.113 13 C -0.120 4.120 14 C 0.115 3.885 15 N -0.630 5.630 16 C 0.542 3.458 17 O -0.600 6.600 18 C -0.575 4.575 19 H 0.088 0.912 20 C 0.038 3.962 21 N -0.824 5.824 22 Si 0.985 3.015 23 H -0.269 1.269 24 H -0.246 1.246 25 H -0.275 1.275 26 N -0.339 5.339 27 O 0.072 5.928 28 C 0.101 3.899 29 N -0.314 5.314 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.221 0.779 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.078 0.922 44 H 0.271 0.729 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.182 -8.344 9.207 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.134 5.134 3 C -0.030 4.030 4 C -0.221 4.221 5 C 0.016 3.984 6 N -0.237 5.237 7 C -0.102 4.102 8 C 0.144 3.856 9 H 0.124 0.876 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.151 4.151 13 C -0.158 4.158 14 C -0.007 4.007 15 N -0.367 5.367 16 C 0.347 3.653 17 O -0.484 6.484 18 C -0.611 4.611 19 H 0.106 0.894 20 C -0.177 4.177 21 N -0.453 5.453 22 Si 0.806 3.194 23 H -0.194 1.194 24 H -0.169 1.169 25 H -0.199 1.199 26 N -0.044 5.044 27 O 0.009 5.991 28 C -0.087 4.087 29 N -0.135 5.135 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.237 0.763 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.213 -8.506 9.392 13.702 hybrid contribution 0.313 1.136 -1.219 1.695 sum -4.901 -7.370 8.173 12.047 Atomic orbital electron populations 1.22465 0.70213 1.07041 1.05462 1.48747 1.08724 1.02726 1.53227 1.23385 0.88880 0.95424 0.95319 1.17537 0.87667 0.91935 1.25002 1.25552 0.93315 0.82078 0.97489 1.71843 1.00509 1.28325 1.23029 1.25473 1.00258 0.83091 1.01350 1.18900 0.81887 0.99387 0.85417 0.87563 1.21054 0.98598 0.96772 0.98406 1.20389 0.92369 1.03433 0.98232 1.21023 0.99859 0.97608 0.96611 1.21823 0.98065 0.97245 0.98658 1.22024 0.82452 0.97387 0.98839 1.47667 1.20803 1.60101 1.08151 1.18639 0.84357 0.76368 0.85979 1.90641 1.21467 1.56627 1.79628 1.21454 1.15836 1.24324 0.99512 0.89397 1.26777 0.93122 0.93408 1.04384 1.70111 1.20368 1.16492 1.38346 0.85213 0.80164 0.77825 0.76224 1.19444 1.16919 1.19946 1.74598 0.89102 1.23448 1.17207 1.85290 1.24376 1.23310 1.66164 1.24069 0.95655 0.92709 0.96238 1.77200 1.01343 1.08937 1.26034 0.88924 0.87886 0.85820 0.76291 0.95468 0.91451 0.91103 0.89943 0.94988 0.89754 0.88766 0.90334 0.93114 0.90389 0.91934 0.78388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 11.45 127.77 1.46 2.25 16 2 N -0.36 -7.29 3.99 -367.73 -1.47 -8.76 16 3 C 0.12 2.89 11.50 84.20 0.97 3.86 16 4 C -0.21 -6.60 6.12 -20.16 -0.12 -6.72 16 5 C 0.23 9.66 8.28 87.23 0.72 10.38 16 6 N -0.50 -22.64 11.59 -302.64 -3.51 -26.15 16 7 C 0.17 8.28 5.27 138.52 0.73 9.01 16 8 C 0.25 10.64 2.54 45.24 0.12 10.75 16 9 H 0.11 3.90 8.06 -2.39 -0.02 3.88 16 10 C -0.11 -4.15 4.81 29.39 0.14 -4.00 16 11 C -0.11 -3.06 5.16 28.62 0.15 -2.92 16 12 C -0.11 -3.33 5.51 29.76 0.16 -3.17 16 13 C -0.12 -3.20 5.71 30.34 0.17 -3.02 16 14 C 0.12 4.23 6.04 86.61 0.52 4.75 16 15 N -0.63 -29.33 2.19 -802.61 -1.76 -31.09 16 16 C 0.54 31.66 7.23 86.36 0.62 32.29 16 17 O -0.60 -39.07 10.66 0.26 0.00 -39.07 16 18 C -0.57 -33.02 8.62 24.83 0.21 -32.80 16 19 H 0.09 4.58 5.83 -2.91 -0.02 4.57 16 20 C 0.04 2.16 5.46 85.30 0.47 2.62 16 21 N -0.82 -51.24 12.07 21.83 0.26 -50.98 16 22 Si 0.99 42.38 29.57 68.60 2.03 44.41 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 N -0.34 -17.61 9.06 -58.50 -0.53 -18.14 16 27 O 0.07 3.34 11.34 74.04 0.84 4.18 16 28 C 0.10 2.92 12.01 85.62 1.03 3.95 16 29 N -0.31 -8.31 12.50 -56.31 -0.70 -9.02 16 30 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.12 0.37 8.14 -2.39 -0.02 0.36 16 33 H 0.22 3.59 8.06 -2.91 -0.02 3.56 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 2.40 8.10 -2.39 -0.02 2.38 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.93 7.35 -2.39 -0.02 1.92 16 38 H 0.03 1.23 7.49 -2.39 -0.02 1.21 16 39 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 41 H 0.08 1.79 7.31 -2.39 -0.02 1.77 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 3.10 5.29 -2.38 -0.01 3.09 16 44 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 45 H 0.20 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -88.43 368.98 3.55 -84.88 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 1.03 Total: 22.50 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 7.36 Total: 27.23 kcal Atomic # 7 Polarization: -136.42 SS G_CDS: -7.71 Total: -144.12 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: 0.84 Total: -34.89 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -88.43 3.55 -84.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364966445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.853 kcal (2) G-P(sol) polarization free energy of solvation -88.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds