Wall clock time and date at job start Wed Apr 1 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00018 * 2 1 4 4 C 1.52999 * 109.47215 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47276 * 66.57650 * 4 3 2 6 6 C 1.37094 * 120.00071 * 264.24858 * 5 4 3 7 7 H 1.08003 * 119.99932 * 143.95684 * 6 5 4 8 8 C 1.38949 * 120.00227 * 323.95936 * 6 5 4 9 9 N 1.31407 * 120.00196 * 156.97392 * 8 6 5 10 10 Si 1.86795 * 119.99636 * 336.96719 * 8 6 5 11 11 H 1.48503 * 109.46973 * 95.11232 * 10 8 6 12 12 H 1.48505 * 109.47283 * 215.11512 * 10 8 6 13 13 H 1.48503 * 109.47338 * 335.11531 * 10 8 6 14 14 C 1.34782 * 119.99903 * 84.24549 * 5 4 3 15 15 O 1.21293 * 119.99730 * 5.33069 * 14 5 4 16 16 C 1.50696 * 119.99966 * 185.31832 * 14 5 4 17 17 H 1.09006 * 109.46992 * 46.70341 * 16 14 5 18 18 C 1.52997 * 109.47700 * 286.70428 * 16 14 5 19 19 N 1.46499 * 109.47100 * 166.70066 * 16 14 5 20 20 N 1.28732 * 125.34198 * 59.97832 * 19 16 14 21 21 N 1.28986 * 108.94662 * 179.74310 * 20 19 16 22 22 C 1.34050 * 107.26260 * 0.43730 * 21 20 19 23 23 C 1.48469 * 126.66786 * 179.83392 * 22 21 20 24 24 C 1.39299 * 120.11526 * 359.68591 * 23 22 21 25 25 C 1.38039 * 119.87622 * 179.97438 * 24 23 22 26 26 C 1.38319 * 120.11642 * 359.97428 * 25 24 23 27 27 C 1.38313 * 120.23775 * 0.27935 * 26 25 24 28 28 C 1.38028 * 120.11601 * 359.48619 * 27 26 25 29 29 N 1.28872 * 125.34086 * 240.00239 * 19 16 14 30 30 H 1.08998 * 109.47668 * 300.00363 * 1 2 3 31 31 H 1.09005 * 109.47349 * 60.00470 * 1 2 3 32 32 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47485 * 59.99241 * 3 2 1 34 34 H 1.09006 * 109.46665 * 299.99563 * 3 2 1 35 35 H 1.09001 * 109.46935 * 306.57773 * 4 3 2 36 36 H 1.08993 * 109.46892 * 186.57934 * 4 3 2 37 37 H 0.97007 * 120.00054 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.46761 * 53.99422 * 18 16 14 39 39 H 1.08999 * 109.47303 * 173.99521 * 18 16 14 40 40 H 1.08998 * 109.47125 * 293.99545 * 18 16 14 41 41 H 1.07995 * 120.06281 * 359.97438 * 24 23 22 42 42 H 1.07997 * 119.93744 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.87670 * 179.97438 * 26 25 24 44 44 H 1.07994 * 119.93941 * 179.74187 * 27 26 25 45 45 H 1.07997 * 120.05840 * 180.25178 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9794 0.5986 -1.2664 6 6 4.2145 -0.7493 -1.3531 7 1 3.9726 -1.2823 -2.2607 8 6 4.7639 -1.4296 -0.2733 9 7 4.5833 -2.7256 -0.1524 10 14 5.7593 -0.5019 1.0064 11 1 4.8801 -0.1317 2.1445 12 1 6.8645 -1.3651 1.4951 13 1 6.3247 0.7287 0.3971 14 6 4.1568 1.3845 -2.3469 15 8 4.0430 2.5879 -2.2468 16 6 4.4967 0.7680 -3.6793 17 1 3.8349 -0.0773 -3.8680 18 6 5.9484 0.2852 -3.6625 19 7 4.3266 1.7670 -4.7373 20 7 4.9592 2.8856 -4.8139 21 7 4.5701 3.5153 -5.8703 22 6 3.6455 2.7523 -6.4702 23 6 2.9105 3.0686 -7.7208 24 6 3.1520 4.2666 -8.3894 25 6 2.4662 4.5554 -9.5521 26 6 1.5413 3.6576 -10.0536 27 6 1.2940 2.4690 -9.3908 28 6 1.9776 2.1682 -8.2301 29 7 3.5199 1.6642 -5.7370 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8489 0.5457 0.8262 36 1 3.9781 2.1737 0.1184 37 1 4.9672 -3.2006 0.6013 38 1 6.1013 -0.3768 -2.8101 39 1 6.1624 -0.2548 -4.5849 40 1 6.6157 1.1431 -3.5806 41 1 3.8742 4.9681 -7.9989 42 1 2.6529 5.4837 -10.0715 43 1 1.0067 3.8877 -10.9633 44 1 0.5678 1.7734 -9.7844 45 1 1.7868 1.2380 -7.7155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457203768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:58 Heat of formation + Delta-G solvation = 97.753671 kcal Electronic energy + Delta-G solvation = -30379.908265 eV Core-core repulsion = 26209.071537 eV Total energy + Delta-G solvation = -4170.836728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.88741 -39.47644 -39.08535 -37.28869 -35.32775 -34.87454 -33.20845 -32.20831 -32.04834 -31.02623 -30.02299 -29.10509 -25.98780 -25.50277 -24.82887 -24.25624 -23.40559 -22.55137 -21.48464 -21.36697 -19.37897 -18.10165 -17.24709 -17.00401 -16.41441 -16.19308 -15.90774 -15.77318 -15.40083 -14.88067 -14.71993 -14.63083 -14.39389 -13.99261 -13.80020 -13.52308 -13.28762 -13.11698 -13.00455 -12.77077 -12.35370 -12.10422 -12.05248 -11.89810 -11.79221 -11.52352 -11.47890 -11.25863 -11.09750 -11.02601 -10.88523 -10.66295 -10.57769 -10.49604 -10.28395 -10.06423 -9.40448 -9.21454 -9.06464 -8.84219 -8.56876 -8.07606 -6.64025 -4.22670 0.83190 1.29067 1.73026 2.19493 2.66270 2.91691 3.09920 3.17551 3.32171 3.80022 3.92636 3.95223 4.00693 4.28842 4.51770 4.73393 4.83892 4.95179 5.00060 5.17287 5.22926 5.31962 5.34983 5.49577 5.53535 5.58514 5.60572 5.69346 5.75361 5.79594 5.86180 5.89992 5.94223 5.96255 5.98922 6.09911 6.14540 6.29163 6.32957 6.36115 6.46187 6.52191 6.63622 6.80812 7.07380 7.65168 7.82523 7.98187 8.67839 8.76110 9.05688 9.34661 10.45304 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.002960 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.490274 B = 9455.611696 C =10135.840109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.054 3.946 4 C 0.103 3.897 5 N -0.437 5.437 6 C -0.353 4.353 7 H 0.107 0.893 8 C 0.081 3.919 9 N -0.840 5.840 10 Si 0.867 3.133 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.258 1.258 14 C 0.466 3.534 15 O -0.577 6.577 16 C 0.157 3.843 17 H 0.141 0.859 18 C -0.156 4.156 19 N -0.110 5.110 20 N -0.022 5.022 21 N -0.292 5.292 22 C 0.189 3.811 23 C 0.001 3.999 24 C -0.082 4.082 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.123 4.123 28 C -0.085 4.085 29 N -0.303 5.303 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.277 0.723 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 5.991 -10.662 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.024 4.024 4 C -0.020 4.020 5 N -0.157 5.157 6 C -0.479 4.479 7 H 0.124 0.876 8 C -0.129 4.129 9 N -0.474 5.474 10 Si 0.694 3.306 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.182 1.182 14 C 0.252 3.748 15 O -0.460 6.460 16 C 0.053 3.947 17 H 0.159 0.841 18 C -0.214 4.214 19 N -0.022 5.022 20 N -0.014 5.014 21 N -0.163 5.163 22 C -0.090 4.090 23 C -0.002 4.002 24 C -0.102 4.102 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.141 4.141 28 C -0.105 4.105 29 N -0.153 5.153 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.379 6.235 -9.880 12.476 hybrid contribution -0.255 0.249 0.581 0.681 sum -4.634 6.484 -9.299 12.247 Atomic orbital electron populations 1.22670 0.82751 1.02222 0.98873 1.88185 1.17935 1.26561 1.95062 1.22855 0.94651 0.85297 0.99569 1.21786 0.92381 0.99624 0.88228 1.43481 1.56684 1.07989 1.07533 1.18978 1.43835 0.80432 1.04701 0.87588 1.25177 0.95627 0.95119 0.96993 1.69777 1.39020 1.08458 1.30100 0.87111 0.80542 0.81004 0.81958 1.19875 1.21093 1.18154 1.19711 0.82532 0.86629 0.85946 1.90675 1.56212 1.13853 1.85303 1.21695 1.02920 0.87284 0.82758 0.84118 1.22137 0.90724 1.03174 1.05401 1.49961 1.21956 1.13980 1.16291 1.78977 1.16545 0.93690 1.12236 1.76004 1.12680 1.25025 1.02624 1.23518 0.98277 0.89132 0.98109 1.17309 0.96805 0.95850 0.90255 1.21224 0.98933 0.95548 0.94518 1.21080 0.97028 0.99877 0.96184 1.21276 0.97764 0.94196 0.99708 1.21077 1.00119 0.97494 0.95450 1.21248 0.94437 0.99103 0.95732 1.74803 1.15988 1.24567 0.99969 0.95030 0.94882 0.89929 0.93502 0.93394 0.89844 0.89539 0.91226 0.86097 0.91538 0.91077 0.84724 0.85472 0.85849 0.85485 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.29 10.52 -35.23 -0.37 -7.66 16 3 C 0.05 1.03 6.23 37.16 0.23 1.26 16 4 C 0.10 2.15 4.39 -4.04 -0.02 2.13 16 5 N -0.44 -9.73 2.18 -114.82 -0.25 -9.98 16 6 C -0.35 -8.24 7.30 -14.94 -0.11 -8.34 16 7 H 0.11 2.54 6.82 -52.48 -0.36 2.18 16 8 C 0.08 1.95 5.27 -17.47 -0.09 1.86 16 9 N -0.84 -21.39 13.96 55.50 0.77 -20.62 16 10 Si 0.87 18.79 25.04 -169.99 -4.26 14.53 16 11 H -0.27 -5.77 6.65 56.52 0.38 -5.40 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 14 C 0.47 10.29 6.92 -10.99 -0.08 10.22 16 15 O -0.58 -14.11 15.34 5.55 0.09 -14.03 16 16 C 0.16 3.02 2.86 -69.09 -0.20 2.82 16 17 H 0.14 2.59 7.12 -51.93 -0.37 2.22 16 18 C -0.16 -2.64 9.28 37.16 0.34 -2.30 16 19 N -0.11 -2.19 3.54 -5.90 -0.02 -2.22 16 20 N -0.02 -0.46 11.97 60.35 0.72 0.26 16 21 N -0.29 -5.75 12.23 32.16 0.39 -5.36 16 22 C 0.19 3.42 7.94 -156.30 -1.24 2.18 16 23 C 0.00 0.01 5.88 -104.89 -0.62 -0.60 16 24 C -0.08 -1.02 9.70 -39.26 -0.38 -1.40 16 25 C -0.12 -1.20 10.04 -39.62 -0.40 -1.60 16 26 C -0.11 -0.99 10.04 -39.52 -0.40 -1.38 16 27 C -0.12 -1.22 10.03 -39.63 -0.40 -1.61 16 28 C -0.09 -1.06 9.70 -39.26 -0.38 -1.45 16 29 N -0.30 -5.78 11.85 32.17 0.38 -5.39 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.80 3.41 -51.93 -0.18 1.62 16 36 H 0.09 1.74 7.53 -51.93 -0.39 1.35 16 37 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.12 2.15 6.36 -51.93 -0.33 1.82 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 41 H 0.13 1.64 7.89 -52.49 -0.41 1.22 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.65 7.88 -52.49 -0.41 1.23 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -30.16 380.48 -5.26 -35.42 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.84 Total: 5.92 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.61 Total: 3.39 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 2.00 Total: -43.31 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.29 Total: -21.69 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.26 Total: 14.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.16 -5.26 -35.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.175 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds