Wall clock time and date at job start Wed Apr 1 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00018 * 2 1 4 4 C 1.52999 * 109.47215 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47276 * 66.57650 * 4 3 2 6 6 C 1.37094 * 120.00071 * 264.24858 * 5 4 3 7 7 H 1.08003 * 119.99932 * 143.95684 * 6 5 4 8 8 C 1.38949 * 120.00227 * 323.95936 * 6 5 4 9 9 N 1.31407 * 120.00196 * 156.97392 * 8 6 5 10 10 Si 1.86795 * 119.99636 * 336.96719 * 8 6 5 11 11 H 1.48503 * 109.46973 * 95.11232 * 10 8 6 12 12 H 1.48505 * 109.47283 * 215.11512 * 10 8 6 13 13 H 1.48503 * 109.47338 * 335.11531 * 10 8 6 14 14 C 1.34782 * 119.99903 * 84.24549 * 5 4 3 15 15 O 1.21293 * 119.99730 * 5.33069 * 14 5 4 16 16 C 1.50696 * 119.99966 * 185.31832 * 14 5 4 17 17 H 1.09006 * 109.46992 * 46.70341 * 16 14 5 18 18 C 1.52997 * 109.47700 * 286.70428 * 16 14 5 19 19 N 1.46499 * 109.47100 * 166.70066 * 16 14 5 20 20 N 1.28732 * 125.34198 * 59.97832 * 19 16 14 21 21 N 1.28986 * 108.94662 * 179.74310 * 20 19 16 22 22 C 1.34050 * 107.26260 * 0.43730 * 21 20 19 23 23 C 1.48469 * 126.66786 * 179.83392 * 22 21 20 24 24 C 1.39299 * 120.11526 * 359.68591 * 23 22 21 25 25 C 1.38039 * 119.87622 * 179.97438 * 24 23 22 26 26 C 1.38319 * 120.11642 * 359.97428 * 25 24 23 27 27 C 1.38313 * 120.23775 * 0.27935 * 26 25 24 28 28 C 1.38028 * 120.11601 * 359.48619 * 27 26 25 29 29 N 1.28872 * 125.34086 * 240.00239 * 19 16 14 30 30 H 1.08998 * 109.47668 * 300.00363 * 1 2 3 31 31 H 1.09005 * 109.47349 * 60.00470 * 1 2 3 32 32 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47485 * 59.99241 * 3 2 1 34 34 H 1.09006 * 109.46665 * 299.99563 * 3 2 1 35 35 H 1.09001 * 109.46935 * 306.57773 * 4 3 2 36 36 H 1.08993 * 109.46892 * 186.57934 * 4 3 2 37 37 H 0.97007 * 120.00054 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.46761 * 53.99422 * 18 16 14 39 39 H 1.08999 * 109.47303 * 173.99521 * 18 16 14 40 40 H 1.08998 * 109.47125 * 293.99545 * 18 16 14 41 41 H 1.07995 * 120.06281 * 359.97438 * 24 23 22 42 42 H 1.07997 * 119.93744 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.87670 * 179.97438 * 26 25 24 44 44 H 1.07994 * 119.93941 * 179.74187 * 27 26 25 45 45 H 1.07997 * 120.05840 * 180.25178 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9794 0.5986 -1.2664 6 6 4.2145 -0.7493 -1.3531 7 1 3.9726 -1.2823 -2.2607 8 6 4.7639 -1.4296 -0.2733 9 7 4.5833 -2.7256 -0.1524 10 14 5.7593 -0.5019 1.0064 11 1 4.8801 -0.1317 2.1445 12 1 6.8645 -1.3651 1.4951 13 1 6.3247 0.7287 0.3971 14 6 4.1568 1.3845 -2.3469 15 8 4.0430 2.5879 -2.2468 16 6 4.4967 0.7680 -3.6793 17 1 3.8349 -0.0773 -3.8680 18 6 5.9484 0.2852 -3.6625 19 7 4.3266 1.7670 -4.7373 20 7 4.9592 2.8856 -4.8139 21 7 4.5701 3.5153 -5.8703 22 6 3.6455 2.7523 -6.4702 23 6 2.9105 3.0686 -7.7208 24 6 3.1520 4.2666 -8.3894 25 6 2.4662 4.5554 -9.5521 26 6 1.5413 3.6576 -10.0536 27 6 1.2940 2.4690 -9.3908 28 6 1.9776 2.1682 -8.2301 29 7 3.5199 1.6642 -5.7370 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8489 0.5457 0.8262 36 1 3.9781 2.1737 0.1184 37 1 4.9672 -3.2006 0.6013 38 1 6.1013 -0.3768 -2.8101 39 1 6.1624 -0.2548 -4.5849 40 1 6.6157 1.1431 -3.5806 41 1 3.8742 4.9681 -7.9989 42 1 2.6529 5.4837 -10.0715 43 1 1.0067 3.8877 -10.9633 44 1 0.5678 1.7734 -9.7844 45 1 1.7868 1.2380 -7.7155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457203768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:57 Heat of formation + Delta-G solvation = 78.675918 kcal Electronic energy + Delta-G solvation = -30380.735538 eV Core-core repulsion = 26209.071537 eV Total energy + Delta-G solvation = -4171.664001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.37005 -41.18051 -39.98314 -38.78419 -36.97908 -36.51528 -34.59300 -34.05068 -33.36150 -31.87650 -31.32786 -30.53614 -27.32453 -27.18717 -26.42456 -25.46250 -24.90069 -23.72069 -22.78701 -22.50857 -21.07815 -19.72132 -18.61024 -18.36413 -17.96384 -17.76331 -17.46971 -17.00794 -16.60521 -16.30246 -16.18336 -16.05411 -15.79938 -15.44497 -14.99969 -14.72412 -14.59836 -14.53310 -14.31909 -14.09627 -13.76531 -13.66731 -13.52066 -13.33278 -13.24350 -13.14565 -12.77398 -12.58576 -12.47183 -12.32711 -12.19670 -12.18385 -11.99866 -11.85995 -11.81123 -11.75422 -11.16360 -10.71095 -10.52181 -9.89853 -9.89718 -9.61607 -8.50960 -6.10532 -0.22051 0.24696 0.46115 0.70200 1.17757 1.33307 1.41069 1.44205 1.58596 2.18388 2.29227 2.69234 2.81751 2.90261 2.97189 3.23048 3.63818 3.71634 3.74612 4.01634 4.07511 4.07797 4.11040 4.21709 4.29455 4.40197 4.42951 4.47788 4.50153 4.52904 4.56042 4.57060 4.65308 4.67616 4.70221 4.80335 4.93714 5.04669 5.13367 5.16754 5.30452 5.52248 5.53282 5.57113 5.96997 6.00976 6.13052 6.29057 6.85223 7.22870 7.26610 7.54687 8.61440 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.002960 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.490274 B = 9455.611696 C =10135.840109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.060 3.940 4 C 0.093 3.907 5 N -0.442 5.442 6 C -0.343 4.343 7 H 0.094 0.906 8 C 0.052 3.948 9 N -0.875 5.875 10 Si 0.909 3.091 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.262 1.262 14 C 0.464 3.536 15 O -0.602 6.602 16 C 0.158 3.842 17 H 0.147 0.853 18 C -0.146 4.146 19 N -0.114 5.114 20 N -0.046 5.046 21 N -0.305 5.305 22 C 0.196 3.804 23 C -0.037 4.037 24 C -0.092 4.092 25 C -0.119 4.119 26 C -0.096 4.096 27 C -0.121 4.121 28 C -0.096 4.096 29 N -0.316 5.316 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.281 0.719 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.158 0.842 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 6.890 -12.358 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.030 4.030 5 N -0.161 5.161 6 C -0.470 4.470 7 H 0.112 0.888 8 C -0.155 4.155 9 N -0.510 5.510 10 Si 0.735 3.265 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.186 1.186 14 C 0.251 3.749 15 O -0.488 6.488 16 C 0.055 3.945 17 H 0.164 0.836 18 C -0.205 4.205 19 N -0.027 5.027 20 N -0.039 5.039 21 N -0.176 5.176 22 C -0.083 4.083 23 C -0.040 4.040 24 C -0.112 4.112 25 C -0.137 4.137 26 C -0.114 4.114 27 C -0.138 4.138 28 C -0.116 4.116 29 N -0.166 5.166 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.146 0.854 42 H 0.176 0.824 43 H 0.180 0.820 44 H 0.174 0.826 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.701 7.134 -11.567 14.738 hybrid contribution 0.016 0.033 0.936 0.937 sum -5.685 7.168 -10.631 14.025 Atomic orbital electron populations 1.22874 0.80377 1.03371 1.00313 1.88120 1.20665 1.27234 1.95344 1.22778 0.93219 0.85237 1.00511 1.21937 0.94091 0.99542 0.87385 1.43564 1.56709 1.07624 1.08184 1.18870 1.43226 0.80724 1.04186 0.88827 1.25580 0.96136 0.95459 0.98369 1.69826 1.40438 1.09579 1.31195 0.86437 0.79596 0.79861 0.80628 1.18941 1.20877 1.18561 1.20105 0.81716 0.86326 0.86775 1.90650 1.57255 1.14968 1.85915 1.21707 1.04331 0.87005 0.81438 0.83571 1.22087 0.89129 1.02964 1.06306 1.49977 1.22221 1.13859 1.16598 1.78923 1.17522 0.94347 1.13100 1.75959 1.13578 1.25362 1.02697 1.24251 0.97300 0.88118 0.98617 1.17524 0.98632 0.97852 0.89992 1.21329 0.99520 0.94763 0.95616 1.21456 0.96130 1.01163 0.94918 1.21768 0.96494 0.92931 1.00224 1.21438 0.99766 0.98465 0.94155 1.21329 0.94682 0.98647 0.96942 1.74801 1.16307 1.25314 1.00190 0.92532 0.94397 0.89024 0.90222 0.94609 0.90348 0.89087 0.90933 0.86843 0.89108 0.91376 0.85371 0.82402 0.81992 0.82636 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.39 -15.78 10.52 -148.98 -1.57 -17.34 16 3 C 0.06 2.25 6.23 71.98 0.45 2.69 16 4 C 0.09 3.87 4.39 86.38 0.38 4.25 16 5 N -0.44 -19.84 2.18 -635.56 -1.39 -21.22 16 6 C -0.34 -16.21 7.30 84.04 0.61 -15.59 16 7 H 0.09 4.60 6.82 -2.91 -0.02 4.58 16 8 C 0.05 2.50 5.27 84.93 0.45 2.95 16 9 N -0.88 -44.92 13.96 21.66 0.30 -44.62 16 10 Si 0.91 38.49 25.04 68.60 1.72 40.21 16 11 H -0.26 -10.71 6.65 99.48 0.66 -10.05 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 14 C 0.46 20.86 6.92 87.66 0.61 21.47 16 15 O -0.60 -30.05 15.34 -3.07 -0.05 -30.09 16 16 C 0.16 6.23 2.86 44.24 0.13 6.36 16 17 H 0.15 5.53 7.12 -2.38 -0.02 5.51 16 18 C -0.15 -5.01 9.28 71.98 0.67 -4.34 16 19 N -0.11 -4.68 3.54 -172.59 -0.61 -5.29 16 20 N -0.05 -1.99 11.97 37.02 0.44 -1.55 16 21 N -0.30 -12.35 12.23 -52.17 -0.64 -12.99 16 22 C 0.20 7.27 7.94 137.38 1.09 8.36 16 23 C -0.04 -1.07 5.88 -20.04 -0.12 -1.18 16 24 C -0.09 -2.19 9.70 22.48 0.22 -1.97 16 25 C -0.12 -1.92 10.04 22.24 0.22 -1.70 16 26 C -0.10 -1.30 10.04 22.31 0.22 -1.08 16 27 C -0.12 -2.00 10.03 22.24 0.22 -1.78 16 28 C -0.10 -2.31 9.70 22.48 0.22 -2.10 16 29 N -0.32 -12.36 11.85 -52.12 -0.62 -12.98 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 3.33 3.41 -2.39 -0.01 3.32 16 36 H 0.09 3.65 7.53 -2.39 -0.02 3.63 16 37 H 0.28 13.52 8.31 -92.70 -0.77 12.75 16 38 H 0.11 4.07 6.36 -2.38 -0.02 4.06 16 39 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 41 H 0.13 3.12 7.89 -2.91 -0.02 3.10 16 42 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.12 3.11 7.88 -2.91 -0.02 3.09 16 Total: -1.00 -66.45 380.48 5.19 -61.27 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.97 Total: 26.24 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.62 Total: 18.37 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -2.51 Total: -98.65 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -1.61 Total: -47.44 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.72 Total: 40.21 kcal Total: -66.45 5.19 -61.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.942 kcal (2) G-P(sol) polarization free energy of solvation -66.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds