Wall clock time and date at job start Wed Apr 1 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35036 * 125.93187 * 2 1 4 4 C 1.35084 * 107.97889 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.07388 * 180.02562 * 4 3 2 6 6 N 1.46907 * 109.47178 * 105.90742 * 5 4 3 7 7 C 1.47437 * 110.99772 * 283.92543 * 6 5 4 8 8 C 1.54322 * 107.23363 * 236.74186 * 7 6 5 9 9 C 1.55147 * 103.01620 * 337.71719 * 8 7 6 10 10 O 1.42897 * 110.98924 * 277.56109 * 9 8 7 11 11 C 1.50694 * 110.98648 * 153.74803 * 9 8 7 12 12 H 1.08011 * 119.99747 * 241.45241 * 11 9 8 13 13 C 1.37874 * 120.00647 * 61.45151 * 11 9 8 14 14 N 1.31515 * 119.99680 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00424 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47024 * 90.00207 * 15 13 11 17 17 H 1.48495 * 109.47148 * 210.00208 * 15 13 11 18 18 H 1.48504 * 109.46968 * 330.00748 * 15 13 11 19 19 C 1.47845 * 111.00070 * 163.08264 * 6 5 4 20 20 C 1.40841 * 107.85228 * 0.26704 * 4 3 2 21 21 C 1.48418 * 126.04111 * 179.74172 * 20 4 3 22 22 C 1.39332 * 120.09161 * 316.61182 * 21 20 4 23 23 C 1.37989 * 119.90179 * 179.74052 * 22 21 20 24 24 C 1.38535 * 120.09528 * 0.51925 * 23 22 21 25 25 F 1.35097 * 119.90892 * 179.74031 * 24 23 22 26 26 C 1.38548 * 120.18853 * 359.76222 * 24 23 22 27 27 C 1.37983 * 120.09531 * 359.97438 * 26 24 23 28 28 N 1.31628 * 107.92230 * 359.55368 * 20 4 3 29 29 H 1.09000 * 109.47327 * 89.99751 * 1 2 3 30 30 H 1.09002 * 109.46813 * 209.99557 * 1 2 3 31 31 H 1.09005 * 109.47029 * 329.99008 * 1 2 3 32 32 H 1.08003 * 126.00846 * 0.02851 * 3 2 1 33 33 H 1.08996 * 109.47266 * 345.90723 * 5 4 3 34 34 H 1.09003 * 109.47113 * 225.90877 * 5 4 3 35 35 H 1.09005 * 109.88975 * 117.33605 * 7 6 5 36 36 H 1.08997 * 110.02937 * 356.22320 * 7 6 5 37 37 H 1.08991 * 110.70697 * 96.10219 * 8 7 6 38 38 H 1.09005 * 110.70301 * 219.33887 * 8 7 6 39 39 H 0.96694 * 114.00438 * 298.54733 * 10 9 8 40 40 H 0.96998 * 120.00003 * 179.97438 * 14 13 11 41 41 H 1.08996 * 110.37100 * 265.19598 * 19 6 5 42 42 H 1.09004 * 110.37552 * 27.42096 * 19 6 5 43 43 H 1.07995 * 120.04871 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.94737 * 180.25661 * 23 22 21 45 45 H 1.08003 * 119.95081 * 180.02562 * 26 24 23 46 46 H 1.07996 * 120.04711 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.0934 0.0000 4 6 3.5425 0.6770 0.0006 5 6 4.7621 1.5623 0.0013 6 7 5.3807 1.5425 1.3336 7 6 4.6132 2.3672 2.2848 8 6 5.5825 3.4196 2.8631 9 6 6.9750 2.7744 2.6358 10 8 7.2818 1.8403 3.6727 11 6 8.0468 3.8281 2.5270 12 1 8.6220 3.9214 1.6175 13 6 8.2932 4.6732 3.5881 14 7 7.5931 4.5593 4.6956 15 14 9.6222 5.9789 3.4535 16 1 9.0331 7.2311 2.9147 17 1 10.1971 6.2405 4.7974 18 1 10.6929 5.5031 2.5410 19 6 6.7677 2.0518 1.2814 20 6 3.5400 -0.7314 -0.0053 21 6 4.7385 -1.6067 -0.0122 22 6 5.8172 -1.3077 -0.8420 23 6 6.9317 -2.1213 -0.8414 24 6 6.9749 -3.2398 -0.0252 25 9 8.0659 -4.0366 -0.0314 26 6 5.9021 -3.5440 0.7972 27 6 4.7859 -2.7329 0.8068 28 7 2.2869 -1.1343 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9226 2.1202 0.0004 33 1 4.4708 2.5823 -0.2489 34 1 5.4765 1.1971 -0.7365 35 1 4.2233 1.7413 3.0876 36 1 3.7911 2.8638 1.7695 37 1 5.4999 4.3600 2.3185 38 1 5.3970 3.5712 3.9265 39 1 7.3256 2.2327 4.5553 40 1 7.7666 5.1535 5.4424 41 1 7.4716 1.2258 1.1803 42 1 6.8840 2.7519 0.4541 43 1 5.7825 -0.4385 -1.4820 44 1 7.7699 -1.8879 -1.4813 45 1 5.9400 -4.4167 1.4322 46 1 3.9500 -2.9709 1.4478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:38 Heat of formation + Delta-G solvation = 21.268820 kcal Electronic energy + Delta-G solvation = -30473.427144 eV Core-core repulsion = 26279.353823 eV Total energy + Delta-G solvation = -4194.073321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.79041 -41.24275 -38.66308 -38.22416 -34.89844 -33.57879 -32.09741 -31.50407 -30.93448 -30.34102 -28.97525 -28.00525 -26.73393 -24.99908 -23.81700 -22.98453 -22.56721 -20.53438 -20.31051 -19.55389 -19.37578 -17.57765 -17.03321 -16.74072 -16.14180 -15.55082 -15.49341 -15.44389 -15.11545 -14.85289 -14.59910 -14.20574 -14.06873 -13.64991 -13.57035 -13.42260 -13.20872 -12.89667 -12.76650 -12.49380 -12.34471 -12.09784 -11.97819 -11.79198 -11.52482 -11.25130 -11.16414 -11.01030 -10.82127 -10.65574 -10.51454 -10.40218 -10.23066 -9.78833 -9.52831 -9.15274 -9.01478 -8.59982 -8.52673 -8.09971 -7.98909 -7.48008 -6.18173 -4.26249 1.02012 1.35339 1.94559 2.44653 2.80309 3.22538 3.30406 3.34323 3.76577 4.30085 4.32244 4.36692 4.68820 4.80823 4.82359 4.92654 4.95318 4.96525 5.10462 5.19639 5.29797 5.34399 5.39284 5.52959 5.74443 5.80492 5.89729 5.95363 6.02822 6.05406 6.12059 6.16235 6.20240 6.21412 6.33380 6.52871 6.53914 6.66716 6.74770 6.93728 6.94918 6.99247 7.13204 7.46321 7.53475 7.69319 7.73683 7.84348 7.90071 8.21924 8.76191 9.42590 9.57579 10.88569 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.003682 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.579885 B = 7603.137507 C = 9777.520359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.378 5.378 3 C 0.054 3.946 4 C -0.196 4.196 5 C 0.122 3.878 6 N -0.516 5.516 7 C 0.051 3.949 8 C -0.144 4.144 9 C 0.253 3.747 10 O -0.578 6.578 11 C -0.535 4.535 12 H 0.060 0.940 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.061 3.939 20 C 0.132 3.868 21 C -0.002 4.002 22 C -0.061 4.061 23 C -0.150 4.150 24 C 0.100 3.900 25 F -0.143 7.143 26 C -0.153 4.153 27 C -0.063 4.063 28 N -0.290 5.290 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.375 0.625 40 H 0.265 0.735 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 -9.180 -10.445 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.161 5.161 3 C -0.092 4.092 4 C -0.207 4.207 5 C -0.008 4.008 6 N -0.240 5.240 7 C -0.077 4.077 8 C -0.183 4.183 9 C 0.212 3.788 10 O -0.385 6.385 11 C -0.574 4.574 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.066 4.066 20 C -0.033 4.033 21 C -0.004 4.004 22 C -0.081 4.081 23 C -0.169 4.169 24 C 0.080 3.920 25 F -0.121 7.121 26 C -0.172 4.172 27 C -0.082 4.082 28 N -0.112 5.112 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.189 0.811 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.224 0.776 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.104 -11.043 -10.609 20.155 hybrid contribution 1.154 2.809 0.351 3.057 sum -11.950 -8.234 -10.259 17.772 Atomic orbital electron populations 1.21802 0.74322 1.04398 1.03064 1.48252 1.06320 1.03679 1.57834 1.22238 0.90679 0.93197 1.03053 1.20031 0.94271 0.92954 1.13464 1.20562 0.92204 0.95384 0.92610 1.63557 1.02419 1.52344 1.05716 1.22768 0.95493 0.94192 0.95261 1.23257 0.97233 0.96387 1.01449 1.19503 0.90341 0.85195 0.83716 1.86160 1.93713 1.39042 1.19582 1.21564 1.19436 1.15623 1.00743 0.92173 1.24986 0.95860 0.97058 0.95123 1.69745 1.40253 1.39142 1.04273 0.86510 0.81948 0.81518 0.77517 1.20658 1.21087 1.19747 1.22971 0.88178 0.97474 0.98021 1.20395 0.90876 0.92300 0.99773 1.17669 0.91427 0.93727 0.97581 1.20938 0.91380 0.98273 0.97486 1.20994 0.99877 0.94857 1.01162 1.17757 0.84189 0.90981 0.99058 1.91484 1.52447 1.72630 1.95573 1.20997 0.93354 1.02067 1.00798 1.20968 0.97338 0.92700 0.97215 1.77538 1.00691 1.07551 1.25449 0.91001 0.89445 0.89562 0.81144 0.94432 0.90739 0.92274 0.94977 0.92809 0.90665 0.77586 0.92467 0.91209 0.93737 0.84841 0.84553 0.84744 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.75 11.46 59.85 0.69 1.44 16 2 N -0.38 -4.57 4.01 -68.20 -0.27 -4.84 16 3 C 0.05 0.66 11.37 -17.26 -0.20 0.46 16 4 C -0.20 -2.85 5.27 -104.76 -0.55 -3.40 16 5 C 0.12 1.87 4.58 -4.97 -0.02 1.85 16 6 N -0.52 -9.82 5.10 -232.69 -1.19 -11.00 16 7 C 0.05 0.99 6.52 -2.84 -0.02 0.97 16 8 C -0.14 -3.29 5.38 -24.90 -0.13 -3.42 16 9 C 0.25 6.24 0.87 -89.64 -0.08 6.16 16 10 O -0.58 -15.28 13.16 -35.23 -0.46 -15.75 16 11 C -0.54 -14.25 8.27 -34.44 -0.28 -14.54 16 12 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 13 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 14 N -0.89 -23.86 10.75 55.43 0.60 -23.27 16 15 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.06 1.30 5.80 -2.30 -0.01 1.28 16 20 C 0.13 1.99 6.66 -82.78 -0.55 1.44 16 21 C 0.00 -0.03 5.74 -104.89 -0.60 -0.63 16 22 C -0.06 -0.82 8.88 -39.27 -0.35 -1.17 16 23 C -0.15 -1.93 10.01 -39.56 -0.40 -2.33 16 24 C 0.10 1.36 7.30 -39.36 -0.29 1.07 16 25 F -0.14 -1.98 17.26 2.25 0.04 -1.95 16 26 C -0.15 -1.98 10.01 -39.56 -0.40 -2.38 16 27 C -0.06 -0.87 9.78 -39.27 -0.38 -1.25 16 28 N -0.29 -4.28 12.61 33.43 0.42 -3.86 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.04 0.55 7.75 -51.93 -0.40 0.15 16 34 H 0.07 1.07 5.64 -51.93 -0.29 0.78 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.03 0.55 7.37 -51.93 -0.38 0.17 16 37 H 0.05 1.25 8.03 -51.93 -0.42 0.83 16 38 H 0.07 1.84 7.54 -51.93 -0.39 1.45 16 39 H 0.38 10.01 7.56 45.56 0.34 10.36 16 40 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.04 0.91 7.70 -51.93 -0.40 0.51 16 43 H 0.13 1.59 6.27 -52.49 -0.33 1.26 16 44 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 45 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 46 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -30.77 383.84 -9.40 -40.17 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.62 Total: 11.79 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.67 Total: -12.64 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.44 Total: -42.97 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.46 Total: -15.75 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.77 -9.40 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.437 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds