Wall clock time and date at job start Wed Apr 1 2020 03:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35036 * 125.93187 * 2 1 4 4 C 1.35084 * 107.97889 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.07388 * 180.02562 * 4 3 2 6 6 N 1.46907 * 109.47178 * 105.90742 * 5 4 3 7 7 C 1.47437 * 110.99772 * 283.92543 * 6 5 4 8 8 C 1.54322 * 107.23363 * 236.74186 * 7 6 5 9 9 C 1.55147 * 103.01620 * 337.71719 * 8 7 6 10 10 O 1.42897 * 110.98924 * 277.56109 * 9 8 7 11 11 C 1.50694 * 110.98648 * 153.74803 * 9 8 7 12 12 H 1.08011 * 119.99747 * 241.45241 * 11 9 8 13 13 C 1.37874 * 120.00647 * 61.45151 * 11 9 8 14 14 N 1.31515 * 119.99680 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00424 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47024 * 90.00207 * 15 13 11 17 17 H 1.48495 * 109.47148 * 210.00208 * 15 13 11 18 18 H 1.48504 * 109.46968 * 330.00748 * 15 13 11 19 19 C 1.47845 * 111.00070 * 163.08264 * 6 5 4 20 20 C 1.40841 * 107.85228 * 0.26704 * 4 3 2 21 21 C 1.48418 * 126.04111 * 179.74172 * 20 4 3 22 22 C 1.39332 * 120.09161 * 316.61182 * 21 20 4 23 23 C 1.37989 * 119.90179 * 179.74052 * 22 21 20 24 24 C 1.38535 * 120.09528 * 0.51925 * 23 22 21 25 25 F 1.35097 * 119.90892 * 179.74031 * 24 23 22 26 26 C 1.38548 * 120.18853 * 359.76222 * 24 23 22 27 27 C 1.37983 * 120.09531 * 359.97438 * 26 24 23 28 28 N 1.31628 * 107.92230 * 359.55368 * 20 4 3 29 29 H 1.09000 * 109.47327 * 89.99751 * 1 2 3 30 30 H 1.09002 * 109.46813 * 209.99557 * 1 2 3 31 31 H 1.09005 * 109.47029 * 329.99008 * 1 2 3 32 32 H 1.08003 * 126.00846 * 0.02851 * 3 2 1 33 33 H 1.08996 * 109.47266 * 345.90723 * 5 4 3 34 34 H 1.09003 * 109.47113 * 225.90877 * 5 4 3 35 35 H 1.09005 * 109.88975 * 117.33605 * 7 6 5 36 36 H 1.08997 * 110.02937 * 356.22320 * 7 6 5 37 37 H 1.08991 * 110.70697 * 96.10219 * 8 7 6 38 38 H 1.09005 * 110.70301 * 219.33887 * 8 7 6 39 39 H 0.96694 * 114.00438 * 298.54733 * 10 9 8 40 40 H 0.96998 * 120.00003 * 179.97438 * 14 13 11 41 41 H 1.08996 * 110.37100 * 265.19598 * 19 6 5 42 42 H 1.09004 * 110.37552 * 27.42096 * 19 6 5 43 43 H 1.07995 * 120.04871 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.94737 * 180.25661 * 23 22 21 45 45 H 1.08003 * 119.95081 * 180.02562 * 26 24 23 46 46 H 1.07996 * 120.04711 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.0934 0.0000 4 6 3.5425 0.6770 0.0006 5 6 4.7621 1.5623 0.0013 6 7 5.3807 1.5425 1.3336 7 6 4.6132 2.3672 2.2848 8 6 5.5825 3.4196 2.8631 9 6 6.9750 2.7744 2.6358 10 8 7.2818 1.8403 3.6727 11 6 8.0468 3.8281 2.5270 12 1 8.6220 3.9214 1.6175 13 6 8.2932 4.6732 3.5881 14 7 7.5931 4.5593 4.6956 15 14 9.6222 5.9789 3.4535 16 1 9.0331 7.2311 2.9147 17 1 10.1971 6.2405 4.7974 18 1 10.6929 5.5031 2.5410 19 6 6.7677 2.0518 1.2814 20 6 3.5400 -0.7314 -0.0053 21 6 4.7385 -1.6067 -0.0122 22 6 5.8172 -1.3077 -0.8420 23 6 6.9317 -2.1213 -0.8414 24 6 6.9749 -3.2398 -0.0252 25 9 8.0659 -4.0366 -0.0314 26 6 5.9021 -3.5440 0.7972 27 6 4.7859 -2.7329 0.8068 28 7 2.2869 -1.1343 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9226 2.1202 0.0004 33 1 4.4708 2.5823 -0.2489 34 1 5.4765 1.1971 -0.7365 35 1 4.2233 1.7413 3.0876 36 1 3.7911 2.8638 1.7695 37 1 5.4999 4.3600 2.3185 38 1 5.3970 3.5712 3.9265 39 1 7.3256 2.2327 4.5553 40 1 7.7666 5.1535 5.4424 41 1 7.4716 1.2258 1.1803 42 1 6.8840 2.7519 0.4541 43 1 5.7825 -0.4385 -1.4820 44 1 7.7699 -1.8879 -1.4813 45 1 5.9400 -4.4167 1.4322 46 1 3.9500 -2.9709 1.4478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:37 Heat of formation + Delta-G solvation = 1.501800 kcal Electronic energy + Delta-G solvation = -30474.284306 eV Core-core repulsion = 26279.353823 eV Total energy + Delta-G solvation = -4194.930484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -49.85758 -42.22634 -39.91290 -39.65662 -36.60217 -34.58450 -34.14027 -32.75390 -31.99854 -31.32103 -30.36225 -29.76865 -27.82519 -26.50775 -25.27235 -23.99186 -23.61002 -21.82414 -21.48195 -21.30982 -20.59116 -18.97537 -18.60040 -17.74832 -17.18254 -16.90659 -16.81360 -16.54474 -16.49926 -16.35291 -15.98226 -15.72671 -15.25976 -14.98859 -14.66067 -14.44977 -14.27804 -14.18146 -13.84394 -13.74781 -13.60239 -13.47077 -13.20513 -13.09177 -13.00987 -12.93432 -12.79162 -12.59346 -12.29518 -12.21840 -12.09671 -11.94952 -11.67192 -11.42628 -11.03517 -10.56744 -10.49355 -10.03404 -10.02022 -9.57566 -9.10844 -8.94522 -8.17760 -6.33422 -0.02311 0.33705 0.99248 1.41028 1.44184 1.53260 1.63663 1.75020 2.40641 2.73002 3.07047 3.29969 3.35792 3.49108 3.80422 3.88930 3.96856 4.04778 4.10328 4.17835 4.23047 4.31883 4.43382 4.48242 4.49198 4.50494 4.56871 4.70818 4.72959 4.83154 4.91417 4.94906 5.00490 5.03569 5.15493 5.15976 5.17491 5.20464 5.36119 5.52223 5.54202 5.60517 5.64128 5.85703 5.93338 6.07128 6.15469 6.33404 6.45073 6.71785 6.73308 7.38399 7.50553 8.87147 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.003682 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.579885 B = 7603.137507 C = 9777.520359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.374 5.374 3 C 0.067 3.933 4 C -0.222 4.222 5 C 0.125 3.875 6 N -0.522 5.522 7 C 0.064 3.936 8 C -0.133 4.133 9 C 0.234 3.766 10 O -0.589 6.589 11 C -0.559 4.559 12 H 0.055 0.945 13 C 0.032 3.968 14 N -0.912 5.912 15 Si 0.956 3.044 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.072 3.928 20 C 0.117 3.883 21 C -0.017 4.017 22 C -0.067 4.067 23 C -0.151 4.151 24 C 0.084 3.916 25 F -0.147 7.147 26 C -0.153 4.153 27 C -0.075 4.075 28 N -0.316 5.316 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.205 0.795 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.369 0.631 40 H 0.267 0.733 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.398 -8.292 -11.617 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.156 5.156 3 C -0.080 4.080 4 C -0.234 4.234 5 C -0.003 4.003 6 N -0.246 5.246 7 C -0.064 4.064 8 C -0.173 4.173 9 C 0.194 3.806 10 O -0.396 6.396 11 C -0.598 4.598 12 H 0.073 0.927 13 C -0.169 4.169 14 N -0.551 5.551 15 Si 0.782 3.218 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.055 4.055 20 C -0.047 4.047 21 C -0.019 4.019 22 C -0.086 4.086 23 C -0.170 4.170 24 C 0.064 3.936 25 F -0.125 7.125 26 C -0.172 4.172 27 C -0.095 4.095 28 N -0.140 5.140 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.222 0.778 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.217 0.783 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.171 0.829 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.402 -10.177 -11.798 21.218 hybrid contribution 1.456 2.515 0.712 2.992 sum -12.946 -7.662 -11.086 18.688 Atomic orbital electron populations 1.22211 0.71605 1.05898 1.04756 1.48668 1.07830 1.02971 1.56150 1.22713 0.89999 0.94555 1.00761 1.19996 0.94822 0.92597 1.15991 1.20570 0.92778 0.96447 0.90522 1.63481 1.01338 1.51883 1.07894 1.22598 0.95418 0.93079 0.95315 1.23039 0.97279 0.96919 1.00020 1.19799 0.90838 0.85365 0.84608 1.86157 1.93956 1.39837 1.19666 1.21849 1.20387 1.16652 1.00876 0.92695 1.25661 0.97632 0.98762 0.94841 1.69840 1.41046 1.39619 1.04599 0.85589 0.79501 0.79324 0.77370 1.19862 1.20901 1.19748 1.22764 0.89584 0.96816 0.96378 1.20521 0.91099 0.92779 1.00272 1.17920 0.91931 0.94060 0.97970 1.21098 0.91201 0.98758 0.97587 1.21244 1.00327 0.94388 1.01015 1.17957 0.84380 0.91471 0.99787 1.91470 1.52621 1.72778 1.95664 1.21205 0.92858 1.02454 1.00676 1.21084 0.97783 0.92997 0.97588 1.77481 1.00966 1.09140 1.26395 0.89175 0.89261 0.86821 0.77837 0.93096 0.90015 0.93534 0.92001 0.93495 0.93052 0.78312 0.92383 0.92487 0.92829 0.83663 0.82723 0.82931 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 11.46 127.77 1.46 2.52 16 2 N -0.37 -8.06 4.01 -369.68 -1.48 -9.55 16 3 C 0.07 1.43 11.37 83.47 0.95 2.37 16 4 C -0.22 -6.02 5.27 -19.95 -0.11 -6.13 16 5 C 0.13 3.60 4.58 85.56 0.39 3.99 16 6 N -0.52 -19.26 5.10 -890.09 -4.54 -23.80 16 7 C 0.06 2.41 6.52 86.65 0.57 2.98 16 8 C -0.13 -6.08 5.38 31.78 0.17 -5.91 16 9 C 0.23 11.62 0.87 -10.16 -0.01 11.61 16 10 O -0.59 -31.86 13.16 -148.98 -1.96 -33.82 16 11 C -0.56 -29.95 8.27 25.60 0.21 -29.74 16 12 H 0.05 2.91 7.79 -2.90 -0.02 2.89 16 13 C 0.03 1.67 5.29 84.65 0.45 2.11 16 14 N -0.91 -48.99 10.75 21.45 0.23 -48.76 16 15 Si 0.96 42.00 29.54 68.60 2.03 44.03 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C 0.07 3.06 5.80 86.77 0.50 3.56 16 20 C 0.12 3.44 6.66 42.53 0.28 3.72 16 21 C -0.02 -0.48 5.74 -20.04 -0.11 -0.60 16 22 C -0.07 -1.76 8.88 22.47 0.20 -1.56 16 23 C -0.15 -3.82 10.01 22.28 0.22 -3.59 16 24 C 0.08 2.25 7.30 22.41 0.16 2.42 16 25 F -0.15 -4.04 17.26 44.97 0.78 -3.26 16 26 C -0.15 -3.94 10.01 22.28 0.22 -3.72 16 27 C -0.08 -2.08 9.78 22.47 0.22 -1.86 16 28 N -0.32 -8.95 12.61 -48.16 -0.61 -9.56 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 34 H 0.08 2.21 5.64 -2.39 -0.01 2.19 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.06 1.96 7.37 -2.39 -0.02 1.94 16 37 H 0.05 2.16 8.03 -2.39 -0.02 2.14 16 38 H 0.05 2.55 7.54 -2.38 -0.02 2.53 16 39 H 0.37 20.32 7.56 -74.06 -0.56 19.75 16 40 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.05 2.14 7.70 -2.39 -0.02 2.12 16 43 H 0.15 3.33 6.27 -2.91 -0.02 3.31 16 44 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 45 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 46 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -66.42 383.84 0.68 -65.74 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.45 Total: 36.79 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 5.79 Total: -17.81 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -6.40 Total: -91.67 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.96 Total: -33.82 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -66.42 0.68 -65.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.239 kcal (2) G-P(sol) polarization free energy of solvation -66.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds