Wall clock time and date at job start Wed Apr 1 2020 03:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47232 * 2 1 4 4 C 1.46502 * 119.99974 * 269.99778 * 3 2 1 5 5 C 1.50699 * 109.47065 * 270.00101 * 4 3 2 6 6 H 1.08001 * 119.99990 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99738 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00331 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99917 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47155 * 89.99847 * 9 7 5 11 11 H 1.48498 * 109.47051 * 209.99907 * 9 7 5 12 12 H 1.48499 * 109.47083 * 330.00248 * 9 7 5 13 13 C 1.34777 * 120.00028 * 90.00170 * 3 2 1 14 14 O 1.21276 * 119.99844 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00079 * 359.97438 * 13 3 2 16 16 N 1.46502 * 109.47210 * 180.02562 * 15 13 3 17 17 C 1.35111 * 125.73403 * 124.99862 * 16 15 13 18 18 C 1.36553 * 106.05039 * 180.02562 * 17 16 15 19 19 C 1.48326 * 126.91817 * 179.97438 * 18 17 16 20 20 C 1.39244 * 119.69520 * 179.72587 * 19 18 17 21 21 C 1.38507 * 119.19250 * 179.77258 * 20 19 18 22 22 C 1.38571 * 118.58044 * 0.49968 * 21 20 19 23 23 C 1.38896 * 119.32746 * 359.74535 * 22 21 20 24 24 O 1.35676 * 119.62262 * 179.97438 * 23 22 21 25 25 C 1.42889 * 117.00092 * 180.02562 * 24 23 22 26 26 N 1.32194 * 120.75909 * 0.02562 * 23 22 21 27 27 N 1.34555 * 106.16398 * 0.23068 * 18 17 16 28 28 N 1.28617 * 108.75746 * 359.61781 * 27 18 17 29 29 H 1.09000 * 109.46903 * 60.00139 * 1 2 3 30 30 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47270 * 299.99870 * 1 2 3 32 32 H 1.08996 * 109.47443 * 239.99604 * 2 1 3 33 33 H 1.09000 * 109.46903 * 119.99861 * 2 1 3 34 34 H 1.09002 * 109.46614 * 29.99663 * 4 3 2 35 35 H 1.08994 * 109.46791 * 149.99871 * 4 3 2 36 36 H 0.96992 * 120.00233 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47243 * 60.00301 * 15 13 3 38 38 H 1.09002 * 109.47184 * 300.00380 * 15 13 3 39 39 H 1.08000 * 126.97431 * 359.97438 * 17 16 15 40 40 H 1.07994 * 120.40436 * 0.02782 * 20 19 18 41 41 H 1.07994 * 120.70927 * 180.22381 * 21 20 19 42 42 H 1.08007 * 120.33584 * 179.77342 * 22 21 20 43 43 H 1.09001 * 109.47239 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47129 * 299.99338 * 25 24 23 45 45 H 1.09004 * 109.47822 * 59.99796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1491 2.3895 -2.8779 8 7 3.3489 3.1248 -3.6186 9 14 5.9136 2.0965 -3.4168 10 1 5.9777 0.8751 -4.2590 11 1 6.3922 3.2637 -4.2003 12 1 6.7736 1.9178 -2.2195 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3082 2.2041 3.5858 17 6 1.4724 2.5364 4.5940 18 6 2.1724 3.3881 5.3997 19 6 1.6907 4.0349 6.6445 20 6 2.5394 4.8786 7.3565 21 6 2.0772 5.4809 8.5150 22 6 0.7831 5.2119 8.9311 23 6 -0.0100 4.3564 8.1772 24 8 -1.2777 4.0886 8.5794 25 6 -2.0436 3.2009 7.7625 26 7 0.4566 3.7994 7.0728 27 7 3.3853 3.5270 4.8339 28 7 3.4290 2.8089 3.7677 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6750 3.5152 -4.4445 37 1 2.6212 0.4187 2.5303 38 1 0.9432 1.0126 2.5299 39 1 0.4564 2.1978 4.7338 40 1 3.5443 5.0644 7.0074 41 1 2.7134 6.1424 9.0842 42 1 0.3950 5.6634 9.8322 43 1 -3.0356 3.0731 8.1957 44 1 -2.1365 3.6187 6.7600 45 1 -1.5431 2.2340 7.7081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603208803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:53 Heat of formation + Delta-G solvation = 75.335212 kcal Electronic energy + Delta-G solvation = -29236.103078 eV Core-core repulsion = 25064.294214 eV Total energy + Delta-G solvation = -4171.808865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.21747 -40.73843 -39.31556 -38.13702 -35.62130 -34.57988 -33.11364 -32.84956 -31.77157 -30.31995 -29.98941 -29.08961 -27.47293 -26.73620 -24.49329 -23.56533 -23.21513 -22.94124 -21.72609 -21.40012 -19.06939 -18.29965 -17.47027 -17.20842 -16.83250 -16.47295 -16.26905 -16.16983 -15.78786 -15.33680 -15.20059 -14.76730 -14.63118 -14.28790 -14.04476 -13.79407 -13.63873 -13.44031 -13.31529 -12.87364 -12.43412 -12.26270 -12.13410 -12.02295 -11.81571 -11.60507 -11.55506 -11.31468 -11.02373 -10.97184 -10.89814 -10.62749 -10.51815 -10.20863 -10.14347 -9.93645 -9.72982 -9.47072 -9.15624 -8.49288 -8.36932 -7.89127 -6.10658 -4.15754 0.58639 1.08834 1.70124 2.20176 2.59476 2.80681 3.01161 3.27606 3.35395 3.40243 3.57530 3.61999 3.72088 4.31742 4.41053 4.52395 4.62985 4.65186 4.79667 4.82138 4.85429 4.99123 5.04928 5.05966 5.13132 5.17654 5.24595 5.31908 5.36963 5.39741 5.53350 5.60603 5.76543 5.81214 5.89332 6.04951 6.09224 6.20488 6.28022 6.45926 6.87420 6.96324 7.28580 7.36411 7.57787 7.84607 8.11947 8.14710 8.54434 8.68914 8.89633 9.49777 10.97635 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.002290 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.498782 B =12226.566225 C =13308.464404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.494 3.506 14 O -0.508 6.508 15 C 0.090 3.910 16 N -0.274 5.274 17 C -0.004 4.004 18 C 0.002 3.998 19 C 0.260 3.740 20 C -0.178 4.178 21 C -0.039 4.039 22 C -0.194 4.194 23 C 0.325 3.675 24 O -0.309 6.309 25 C 0.039 3.961 26 N -0.536 5.536 27 N -0.252 5.252 28 N -0.035 5.035 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.196 0.804 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 -4.845 22.588 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.323 5.323 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.276 3.724 14 O -0.383 6.383 15 C -0.035 4.035 16 N -0.065 5.065 17 C -0.156 4.156 18 C -0.135 4.135 19 C 0.123 3.877 20 C -0.200 4.200 21 C -0.064 4.064 22 C -0.214 4.214 23 C 0.145 3.855 24 O -0.216 6.216 25 C -0.056 4.056 26 N -0.261 5.261 27 N -0.120 5.120 28 N -0.015 5.015 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.212 0.788 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.166 -4.375 21.536 24.213 hybrid contribution 0.154 -0.163 0.014 0.225 sum -10.012 -4.538 21.550 24.192 Atomic orbital electron populations 1.22247 0.96447 1.01779 1.02469 1.21534 0.93716 0.83934 1.03202 1.48252 1.63429 1.13334 1.07252 1.19346 0.96628 0.93625 0.77418 1.21392 0.96740 1.32287 1.06353 0.92327 1.24930 0.97970 0.94759 0.96354 1.69921 1.35791 1.33262 1.14322 0.86481 0.84542 0.77695 0.78663 1.20614 1.21030 1.19746 1.19853 0.80420 0.87491 0.84591 1.90813 1.44010 1.17255 1.86207 1.22214 1.04823 0.92165 0.84285 1.46798 1.09987 1.31738 1.18019 1.23535 0.99350 1.02482 0.90273 1.19748 0.92968 1.03032 0.97739 1.17851 0.87520 0.92023 0.90293 1.21972 1.02204 0.99382 0.96396 1.21380 0.94176 0.96158 0.94725 1.21093 0.94670 1.02694 1.02992 1.19593 0.85412 0.91359 0.89162 1.86242 1.21221 1.63752 1.50365 1.22862 0.94405 0.92911 0.95428 1.66991 1.16112 1.27568 1.15384 1.75334 1.17713 1.16331 1.02666 1.78493 1.05533 1.05835 1.11682 0.91663 0.91755 0.93261 0.89192 0.91773 0.94613 0.93802 0.92621 0.85574 0.85276 0.78750 0.83428 0.83676 0.84048 0.88680 0.92168 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.10 1.34 5.93 -4.04 -0.02 1.31 16 3 N -0.59 -11.28 2.46 -175.06 -0.43 -11.71 16 4 C 0.25 6.18 5.16 -5.19 -0.03 6.15 16 5 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.49 9.51 7.68 -10.99 -0.08 9.42 16 14 O -0.51 -12.69 15.25 5.56 0.08 -12.61 16 15 C 0.09 1.17 5.48 -5.19 -0.03 1.14 16 16 N -0.27 -4.24 3.19 -62.18 -0.20 -4.44 16 17 C 0.00 -0.05 11.32 -16.72 -0.19 -0.24 16 18 C 0.00 0.02 7.00 -83.13 -0.58 -0.56 16 19 C 0.26 3.44 6.75 -82.95 -0.56 2.88 16 20 C -0.18 -2.03 9.74 -39.11 -0.38 -2.41 16 21 C -0.04 -0.34 10.16 -39.36 -0.40 -0.74 16 22 C -0.19 -1.77 10.04 -39.22 -0.39 -2.17 16 23 C 0.32 3.60 7.49 -17.15 -0.13 3.47 16 24 O -0.31 -3.11 10.47 -18.73 -0.20 -3.30 16 25 C 0.04 0.29 10.38 101.05 1.05 1.34 16 26 N -0.54 -6.57 8.94 -9.85 -0.09 -6.66 16 27 N -0.25 -4.50 12.14 33.05 0.40 -4.10 16 28 N -0.04 -0.67 12.09 60.35 0.73 0.06 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.47 7.22 -51.93 -0.37 0.09 16 32 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 33 H 0.06 0.64 6.44 -51.93 -0.33 0.30 16 34 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 1.31 7.40 -51.93 -0.38 0.93 16 38 H 0.13 1.09 7.11 -51.93 -0.37 0.72 16 39 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.15 1.65 7.88 -52.49 -0.41 1.24 16 41 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 45 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -37.10 391.43 -5.89 -43.00 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.02 Total: -2.26 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.79 Total: 4.88 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 1.15 Total: -52.35 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.11 Total: -15.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.10 -5.89 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603208803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.332 kcal (2) G-P(sol) polarization free energy of solvation -37.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds