Wall clock time and date at job start Wed Apr 1 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47232 * 2 1 4 4 C 1.46502 * 119.99974 * 269.99778 * 3 2 1 5 5 C 1.50699 * 109.47065 * 270.00101 * 4 3 2 6 6 H 1.08001 * 119.99990 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99738 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00331 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99917 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47155 * 89.99847 * 9 7 5 11 11 H 1.48498 * 109.47051 * 209.99907 * 9 7 5 12 12 H 1.48499 * 109.47083 * 330.00248 * 9 7 5 13 13 C 1.34777 * 120.00028 * 90.00170 * 3 2 1 14 14 O 1.21276 * 119.99844 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00079 * 359.97438 * 13 3 2 16 16 N 1.46502 * 109.47210 * 180.02562 * 15 13 3 17 17 C 1.35111 * 125.73403 * 124.99862 * 16 15 13 18 18 C 1.36553 * 106.05039 * 180.02562 * 17 16 15 19 19 C 1.48326 * 126.91817 * 179.97438 * 18 17 16 20 20 C 1.39244 * 119.69520 * 179.72587 * 19 18 17 21 21 C 1.38507 * 119.19250 * 179.77258 * 20 19 18 22 22 C 1.38571 * 118.58044 * 0.49968 * 21 20 19 23 23 C 1.38896 * 119.32746 * 359.74535 * 22 21 20 24 24 O 1.35676 * 119.62262 * 179.97438 * 23 22 21 25 25 C 1.42889 * 117.00092 * 180.02562 * 24 23 22 26 26 N 1.32194 * 120.75909 * 0.02562 * 23 22 21 27 27 N 1.34555 * 106.16398 * 0.23068 * 18 17 16 28 28 N 1.28617 * 108.75746 * 359.61781 * 27 18 17 29 29 H 1.09000 * 109.46903 * 60.00139 * 1 2 3 30 30 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47270 * 299.99870 * 1 2 3 32 32 H 1.08996 * 109.47443 * 239.99604 * 2 1 3 33 33 H 1.09000 * 109.46903 * 119.99861 * 2 1 3 34 34 H 1.09002 * 109.46614 * 29.99663 * 4 3 2 35 35 H 1.08994 * 109.46791 * 149.99871 * 4 3 2 36 36 H 0.96992 * 120.00233 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47243 * 60.00301 * 15 13 3 38 38 H 1.09002 * 109.47184 * 300.00380 * 15 13 3 39 39 H 1.08000 * 126.97431 * 359.97438 * 17 16 15 40 40 H 1.07994 * 120.40436 * 0.02782 * 20 19 18 41 41 H 1.07994 * 120.70927 * 180.22381 * 21 20 19 42 42 H 1.08007 * 120.33584 * 179.77342 * 22 21 20 43 43 H 1.09001 * 109.47239 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47129 * 299.99338 * 25 24 23 45 45 H 1.09004 * 109.47822 * 59.99796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1491 2.3895 -2.8779 8 7 3.3489 3.1248 -3.6186 9 14 5.9136 2.0965 -3.4168 10 1 5.9777 0.8751 -4.2590 11 1 6.3922 3.2637 -4.2003 12 1 6.7736 1.9178 -2.2195 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3082 2.2041 3.5858 17 6 1.4724 2.5364 4.5940 18 6 2.1724 3.3881 5.3997 19 6 1.6907 4.0349 6.6445 20 6 2.5394 4.8786 7.3565 21 6 2.0772 5.4809 8.5150 22 6 0.7831 5.2119 8.9311 23 6 -0.0100 4.3564 8.1772 24 8 -1.2777 4.0886 8.5794 25 6 -2.0436 3.2009 7.7625 26 7 0.4566 3.7994 7.0728 27 7 3.3853 3.5270 4.8339 28 7 3.4290 2.8089 3.7677 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6750 3.5152 -4.4445 37 1 2.6212 0.4187 2.5303 38 1 0.9432 1.0126 2.5299 39 1 0.4564 2.1978 4.7338 40 1 3.5443 5.0644 7.0074 41 1 2.7134 6.1424 9.0842 42 1 0.3950 5.6634 9.8322 43 1 -3.0356 3.0731 8.1957 44 1 -2.1365 3.6187 6.7600 45 1 -1.5431 2.2340 7.7081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603208803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:52 Heat of formation + Delta-G solvation = 47.115637 kcal Electronic energy + Delta-G solvation = -29237.326771 eV Core-core repulsion = 25064.294214 eV Total energy + Delta-G solvation = -4173.032558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.36170 -41.51915 -40.81471 -38.87861 -37.13305 -35.79623 -34.89488 -33.95103 -32.68362 -31.69446 -30.96529 -30.33355 -28.54638 -28.04986 -25.42453 -25.16626 -24.37026 -24.00418 -22.72964 -22.58506 -20.33399 -19.27308 -18.77774 -18.46944 -18.27641 -17.80069 -17.11621 -16.98966 -16.92120 -16.82931 -16.40846 -16.17458 -15.83116 -15.43145 -14.97937 -14.85424 -14.71633 -14.48322 -14.37844 -14.15217 -13.74198 -13.56963 -13.27767 -13.12834 -13.09700 -12.80874 -12.69989 -12.59703 -12.53344 -12.31115 -12.20423 -12.10851 -11.88874 -11.76158 -11.59772 -11.07846 -10.76815 -10.67409 -10.65913 -10.44763 -9.54732 -9.24752 -8.26128 -6.40002 -0.26929 0.31512 0.56344 1.16064 1.33582 1.37578 1.47072 1.53578 1.59653 2.10716 2.19346 2.37827 2.68203 2.86223 3.04386 3.28447 3.53634 3.61410 3.78383 3.88503 4.03300 4.14233 4.17808 4.19556 4.34574 4.41292 4.49201 4.50404 4.54163 4.58750 4.64311 4.83565 4.85299 4.90656 4.99063 5.06028 5.08916 5.18149 5.27305 5.38981 5.44219 5.45904 5.53141 5.78230 6.01902 6.22484 6.59361 6.70522 6.73968 7.20043 7.34429 7.36944 8.81136 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.002290 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.498782 B =12226.566225 C =13308.464404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.593 5.593 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.275 1.275 13 C 0.484 3.516 14 O -0.580 6.580 15 C 0.100 3.900 16 N -0.276 5.276 17 C 0.012 3.988 18 C -0.011 4.011 19 C 0.233 3.767 20 C -0.191 4.191 21 C -0.029 4.029 22 C -0.186 4.186 23 C 0.309 3.691 24 O -0.315 6.315 25 C 0.034 3.966 26 N -0.541 5.541 27 N -0.279 5.279 28 N -0.091 5.091 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.029 0.971 35 H -0.007 1.007 36 H 0.267 0.733 37 H 0.161 0.839 38 H 0.186 0.814 39 H 0.237 0.763 40 H 0.141 0.859 41 H 0.181 0.819 42 H 0.170 0.830 43 H 0.122 0.878 44 H 0.054 0.946 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 -6.884 25.057 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.325 5.325 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.200 1.200 13 C 0.270 3.730 14 O -0.459 6.459 15 C -0.023 4.023 16 N -0.067 5.067 17 C -0.141 4.141 18 C -0.148 4.148 19 C 0.097 3.903 20 C -0.212 4.212 21 C -0.054 4.054 22 C -0.207 4.207 23 C 0.129 3.871 24 O -0.222 6.222 25 C -0.060 4.060 26 N -0.267 5.267 27 N -0.146 5.146 28 N -0.070 5.070 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.047 0.953 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.178 0.822 38 H 0.203 0.797 39 H 0.253 0.747 40 H 0.159 0.841 41 H 0.199 0.801 42 H 0.187 0.813 43 H 0.140 0.860 44 H 0.073 0.927 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.540 -6.484 24.004 27.412 hybrid contribution 0.449 0.496 -0.657 0.938 sum -11.091 -5.988 23.347 26.532 Atomic orbital electron populations 1.22201 0.94024 1.03939 1.02066 1.21955 0.95687 0.80561 1.04877 1.48223 1.63310 1.15403 1.05527 1.18714 0.95361 0.91414 0.80186 1.21702 0.97943 1.31996 1.06358 0.92776 1.25828 1.02209 0.94509 0.96583 1.70038 1.37727 1.34233 1.14811 0.85465 0.79215 0.78276 0.78183 1.18435 1.20872 1.20044 1.20898 0.78690 0.86910 0.86467 1.90783 1.47028 1.20578 1.87497 1.22459 1.08889 0.91259 0.79683 1.46978 1.09514 1.31576 1.18662 1.24157 1.00179 1.00953 0.88786 1.20212 0.92443 1.03475 0.98696 1.17851 0.88475 0.93489 0.90474 1.22087 1.01920 0.99723 0.97465 1.21762 0.94456 0.95528 0.93625 1.21499 0.94387 1.01452 1.03323 1.19970 0.86086 0.91843 0.89228 1.86246 1.20860 1.64283 1.50848 1.23067 0.95335 0.92387 0.95253 1.66884 1.15614 1.28089 1.16103 1.75239 1.19593 1.16837 1.02978 1.78428 1.07776 1.07987 1.12845 0.94514 0.88194 0.91310 0.90589 0.87076 0.95292 0.98876 0.92429 0.82210 0.79656 0.74674 0.84149 0.80123 0.81287 0.86022 0.92738 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.24 71.98 0.74 -2.27 16 2 C 0.09 2.21 5.93 86.38 0.51 2.72 16 3 N -0.59 -22.78 2.46 -826.17 -2.03 -24.81 16 4 C 0.26 13.84 5.16 85.63 0.44 14.28 16 5 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 9 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.48 18.68 7.68 87.66 0.67 19.36 16 14 O -0.58 -30.43 15.25 -3.02 -0.05 -30.47 16 15 C 0.10 2.31 5.48 85.63 0.47 2.78 16 16 N -0.28 -8.22 3.19 -350.62 -1.12 -9.34 16 17 C 0.01 0.29 11.32 83.79 0.95 1.24 16 18 C -0.01 -0.33 7.00 41.02 0.29 -0.04 16 19 C 0.23 6.09 6.75 41.94 0.28 6.37 16 20 C -0.19 -4.27 9.74 22.58 0.22 -4.05 16 21 C -0.03 -0.44 10.16 22.41 0.23 -0.21 16 22 C -0.19 -2.93 10.04 22.51 0.23 -2.70 16 23 C 0.31 6.28 7.49 84.80 0.63 6.91 16 24 O -0.32 -5.67 10.47 -89.93 -0.94 -6.62 16 25 C 0.03 0.43 10.38 113.37 1.18 1.61 16 26 N -0.54 -12.60 8.94 -297.98 -2.66 -15.26 16 27 N -0.28 -10.34 12.14 -49.34 -0.60 -10.93 16 28 N -0.09 -3.56 12.09 37.02 0.45 -3.11 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.00 7.22 -2.39 -0.02 0.98 16 32 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 33 H 0.11 1.68 6.44 -2.39 -0.02 1.66 16 34 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 35 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.16 2.65 7.40 -2.39 -0.02 2.63 16 38 H 0.19 2.11 7.11 -2.39 -0.02 2.09 16 39 H 0.24 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.14 3.26 7.88 -2.91 -0.02 3.23 16 41 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 45 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 Total: -1.00 -90.17 391.43 3.91 -86.26 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.01 Total: 6.66 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 7.54 Total: 16.24 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -5.68 Total: -119.52 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.99 Total: -37.09 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -90.17 3.91 -86.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603208803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.374 kcal (2) G-P(sol) polarization free energy of solvation -90.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds