Wall clock time and date at job start Wed Apr 1 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47001 * 2 1 4 4 C 1.50700 * 109.47400 * 239.99998 * 2 1 3 5 5 O 1.21283 * 120.00204 * 270.84314 * 4 2 1 6 6 N 1.34776 * 119.99766 * 90.84220 * 4 2 1 7 7 C 1.46504 * 120.00199 * 355.93358 * 6 4 2 8 8 C 1.50700 * 109.47446 * 93.18197 * 7 6 4 9 9 H 1.07996 * 119.99705 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00071 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99834 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00203 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47169 * 59.99587 * 12 10 8 14 14 H 1.48495 * 109.47454 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47140 * 299.99925 * 12 10 8 16 16 C 1.39927 * 120.00055 * 175.92905 * 6 4 2 17 17 C 1.38868 * 120.06997 * 6.84117 * 16 6 4 18 18 C 1.38113 * 119.93034 * 179.67953 * 17 16 6 19 19 C 1.38288 * 120.06826 * 0.61445 * 18 17 16 20 20 C 1.38273 * 120.13870 * 359.68142 * 19 18 17 21 21 C 1.38111 * 120.07587 * 359.97438 * 20 19 18 22 22 N 1.46902 * 109.47334 * 119.99912 * 2 1 3 23 23 C 1.47849 * 110.99855 * 52.65313 * 22 2 1 24 24 C 1.54904 * 104.79501 * 213.63698 * 23 22 2 25 25 C 1.55144 * 101.65399 * 37.06922 * 24 23 22 26 26 F 1.39899 * 110.70281 * 205.96210 * 25 24 23 27 27 C 1.47204 * 110.70519 * 82.73004 * 25 24 23 28 28 N 4.43731 * 44.01133 * 97.43560 * 2 1 3 29 29 C 1.47435 * 111.00118 * 291.81086 * 22 2 1 30 30 H 1.09001 * 109.47092 * 170.47844 * 1 2 3 31 31 H 1.09000 * 109.47392 * 290.47884 * 1 2 3 32 32 H 1.08995 * 109.46971 * 50.48335 * 1 2 3 33 33 H 1.09004 * 109.46962 * 213.17933 * 7 6 4 34 34 H 1.09007 * 109.46689 * 333.17644 * 7 6 4 35 35 H 0.97001 * 119.99636 * 180.02562 * 11 10 8 36 36 H 1.08002 * 120.03368 * 359.97292 * 17 16 6 37 37 H 1.07994 * 119.96849 * 180.34126 * 18 17 16 38 38 H 1.07999 * 119.92769 * 179.70334 * 19 18 17 39 39 H 1.08000 * 119.96600 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.04155 * 180.02562 * 21 20 19 41 41 H 1.09003 * 110.37202 * 332.46410 * 23 22 2 42 42 H 1.08999 * 110.37555 * 94.80577 * 23 22 2 43 43 H 1.08993 * 110.99183 * 278.97464 * 24 23 22 44 44 H 1.09010 * 111.02228 * 155.17211 * 24 23 22 45 45 H 1.08998 * 109.88719 * 242.66070 * 29 22 2 46 46 H 1.08998 * 109.88989 * 3.68337 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2199 -1.9084 -1.2050 6 7 2.2732 -0.0144 -2.3592 7 6 1.9626 1.4161 -2.4181 8 6 3.1876 2.2118 -2.0477 9 1 4.1055 1.7028 -1.7934 10 6 3.1362 3.5895 -2.0325 11 7 2.0182 4.2092 -2.3417 12 14 4.6544 4.5758 -1.5726 13 1 5.7517 4.2683 -2.5247 14 1 4.3396 6.0258 -1.6324 15 1 5.0791 4.2175 -0.1954 16 6 2.8199 -0.6582 -3.4749 17 6 2.9830 -2.0372 -3.4719 18 6 3.5168 -2.6704 -4.5772 19 6 3.9005 -1.9311 -5.6811 20 6 3.7450 -0.5572 -5.6848 21 6 3.2053 0.0812 -4.5854 22 7 2.0197 -0.6925 1.1994 23 6 1.4068 -2.0321 1.3251 24 6 1.2647 -2.2605 2.8506 25 6 0.8929 -0.8385 3.3472 26 9 1.2780 -0.6639 4.6807 27 6 -0.5488 -0.5904 3.1835 28 7 -1.6614 -0.3990 3.0571 29 6 1.7137 0.0799 2.4174 30 1 -0.3633 -1.0135 -0.1700 31 1 -0.3634 0.3595 0.9627 32 1 -0.3633 0.6539 -0.7928 33 1 1.6507 1.6788 -3.4290 34 1 1.1573 1.6421 -1.7191 35 1 1.9821 5.1785 -2.3313 36 1 2.6883 -2.6146 -2.6080 37 1 3.6388 -3.7434 -4.5777 38 1 4.3221 -2.4281 -6.5424 39 1 4.0452 0.0174 -6.5486 40 1 3.0838 1.1543 -4.5890 41 1 0.4278 -2.0479 0.8462 42 1 2.0569 -2.7894 0.8869 43 1 2.2077 -2.5918 3.2854 44 1 0.4665 -2.9707 3.0670 45 1 2.6393 0.3757 2.9112 46 1 1.1323 0.9650 2.1590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615637535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:45 Heat of formation + Delta-G solvation = 14.556236 kcal Electronic energy + Delta-G solvation = -31152.792572 eV Core-core repulsion = 26958.428171 eV Total energy + Delta-G solvation = -4194.364401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.25514 -40.72138 -39.29959 -37.66173 -36.46333 -35.36254 -33.26736 -32.75397 -30.31990 -29.75318 -29.29691 -28.65435 -27.37044 -24.80371 -23.42975 -23.14154 -22.34608 -21.70254 -20.63225 -19.13700 -18.57069 -17.03879 -16.85850 -16.60257 -16.39404 -15.87816 -15.48013 -15.29420 -14.87613 -14.68681 -14.54627 -14.19772 -14.12184 -13.71754 -13.58892 -13.39431 -13.21166 -13.03967 -12.80091 -12.72546 -12.59281 -12.41523 -12.30269 -12.04894 -11.96336 -11.77420 -11.55564 -11.44363 -11.25172 -11.13418 -11.00685 -10.95539 -10.76025 -10.57581 -10.35622 -10.12201 -9.24924 -8.78224 -8.67259 -8.34903 -8.29766 -7.24286 -6.32410 -4.41770 1.83959 2.00400 2.21172 2.22005 2.95731 3.10720 3.18483 3.23829 3.27925 3.45989 3.88044 3.96989 4.06622 4.23637 4.32596 4.48626 4.82557 5.00839 5.02705 5.03954 5.14346 5.29562 5.35736 5.42401 5.45059 5.50031 5.63553 5.69281 5.71309 5.76464 5.88141 6.03406 6.06729 6.13016 6.17103 6.24149 6.50857 6.71564 6.74278 6.83509 6.92549 6.98768 6.99913 7.04123 7.12053 7.26417 7.60951 7.79416 7.82392 8.04731 8.60061 8.72578 9.27229 10.73581 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008961 B = 0.004394 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.739840 B = 6370.432466 C = 8517.593462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.055 3.945 3 H 0.134 0.866 4 C 0.535 3.465 5 O -0.534 6.534 6 N -0.531 5.531 7 C 0.225 3.775 8 C -0.542 4.542 9 H 0.065 0.935 10 C 0.069 3.931 11 N -0.889 5.889 12 Si 0.898 3.102 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.170 3.830 17 C -0.180 4.180 18 C -0.110 4.110 19 C -0.161 4.161 20 C -0.106 4.106 21 C -0.143 4.143 22 N -0.497 5.497 23 C 0.039 3.961 24 C -0.139 4.139 25 C 0.201 3.799 26 F -0.172 7.172 27 C 0.186 3.814 28 N -0.384 5.384 29 C 0.032 3.968 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.268 0.732 36 H 0.179 0.821 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -10.024 5.312 11.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.056 4.056 3 H 0.152 0.848 4 C 0.325 3.675 5 O -0.414 6.414 6 N -0.250 5.250 7 C 0.107 3.893 8 C -0.580 4.580 9 H 0.083 0.917 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.725 3.275 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.074 3.926 17 C -0.199 4.199 18 C -0.129 4.129 19 C -0.180 4.180 20 C -0.125 4.125 21 C -0.163 4.163 22 N -0.220 5.220 23 C -0.087 4.087 24 C -0.178 4.178 25 C 0.178 3.822 26 F -0.152 7.152 27 C -0.134 4.134 28 N -0.059 5.059 29 C -0.098 4.098 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.195 0.805 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.079 0.921 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.135 0.865 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.764 -10.119 5.165 11.497 hybrid contribution 0.360 1.075 0.338 1.183 sum -1.403 -9.043 5.503 10.679 Atomic orbital electron populations 1.22454 0.95282 1.02997 1.03409 1.22027 0.94048 1.00917 0.88637 0.84811 1.20192 0.76873 0.86556 0.83886 1.90210 1.53047 1.15020 1.83104 1.45938 1.56458 1.12624 1.09976 1.19758 0.97532 0.72449 0.99597 1.21348 0.97250 0.91130 1.48293 0.91661 1.24914 0.96439 0.97549 0.94555 1.69906 1.25901 1.09644 1.47175 0.86535 0.82809 0.78676 0.79467 1.19933 1.21118 1.19823 1.18055 0.95560 0.91624 0.87382 1.22746 1.01972 0.93773 1.01395 1.21018 0.99235 0.99122 0.93540 1.20981 1.03981 0.94316 0.98759 1.20861 0.99491 0.94391 0.97769 1.21142 1.01308 1.01037 0.92804 1.63676 1.56165 1.02154 1.00028 1.23305 1.00251 0.92212 0.92961 1.23464 1.04431 0.92412 0.97537 1.19277 0.82399 1.00608 0.79894 1.92973 1.91016 1.96660 1.34574 1.29092 0.94840 0.94438 0.95071 1.81223 1.11965 1.07062 1.05622 1.23523 1.00267 0.95750 0.90214 0.91684 0.92058 0.90250 0.93627 0.93538 0.92220 0.80485 0.86865 0.87236 0.86568 0.84337 0.92110 0.87045 0.87102 0.89069 0.86499 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 8.22 37.15 0.31 -2.36 16 2 C 0.05 0.88 1.69 -68.87 -0.12 0.77 16 3 H 0.13 2.42 6.26 -51.93 -0.33 2.10 16 4 C 0.54 9.97 6.75 -10.99 -0.07 9.89 16 5 O -0.53 -10.02 10.79 5.55 0.06 -9.96 16 6 N -0.53 -10.74 2.68 -114.73 -0.31 -11.05 16 7 C 0.23 4.95 4.09 -5.19 -0.02 4.93 16 8 C -0.54 -13.08 8.53 -34.44 -0.29 -13.37 16 9 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -22.91 13.29 55.43 0.74 -22.17 16 12 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 14 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 C 0.17 3.39 6.49 -83.69 -0.54 2.84 16 17 C -0.18 -3.32 9.05 -39.39 -0.36 -3.68 16 18 C -0.11 -1.77 10.04 -39.61 -0.40 -2.17 16 19 C -0.16 -2.48 10.04 -39.55 -0.40 -2.87 16 20 C -0.11 -1.76 10.04 -39.62 -0.40 -2.16 16 21 C -0.14 -2.74 9.08 -39.39 -0.36 -3.10 16 22 N -0.50 -6.83 5.09 -224.69 -1.14 -7.98 16 23 C 0.04 0.47 4.85 -2.30 -0.01 0.46 16 24 C -0.14 -1.26 6.35 -24.59 -0.16 -1.41 16 25 C 0.20 2.10 1.60 -91.58 -0.15 1.95 16 26 F -0.17 -1.83 16.93 2.25 0.04 -1.79 16 27 C 0.19 2.27 12.31 -20.76 -0.26 2.01 16 28 N -0.38 -5.42 18.36 42.15 0.77 -4.65 16 29 C 0.03 0.37 5.75 -2.84 -0.02 0.35 16 30 H 0.06 0.92 6.24 -51.93 -0.32 0.59 16 31 H 0.06 0.84 4.62 -51.93 -0.24 0.60 16 32 H 0.08 1.22 7.05 -51.93 -0.37 0.85 16 33 H 0.05 1.07 6.72 -51.93 -0.35 0.72 16 34 H 0.05 1.02 5.36 -51.93 -0.28 0.74 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.18 3.37 4.54 -56.20 -0.26 3.11 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.14 2.85 6.20 -52.49 -0.33 2.52 16 41 H 0.06 0.76 5.28 -51.93 -0.27 0.49 16 42 H 0.11 1.44 7.12 -51.93 -0.37 1.07 16 43 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.09 0.69 8.02 -51.92 -0.42 0.28 16 45 H 0.12 1.22 8.10 -51.93 -0.42 0.80 16 46 H 0.08 0.96 6.34 -51.93 -0.33 0.64 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -26.80 368.62 -8.15 -34.95 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.51 Total: 8.79 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -3.33 Total: -6.29 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.06 Total: -45.84 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.06 Total: -9.96 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -26.80 -8.15 -34.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615637535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.507 kcal (2) G-P(sol) polarization free energy of solvation -26.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds