Wall clock time and date at job start Wed Apr 1 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47001 * 2 1 4 4 C 1.50700 * 109.47400 * 239.99998 * 2 1 3 5 5 O 1.21283 * 120.00204 * 270.84314 * 4 2 1 6 6 N 1.34776 * 119.99766 * 90.84220 * 4 2 1 7 7 C 1.46504 * 120.00199 * 355.93358 * 6 4 2 8 8 C 1.50700 * 109.47446 * 93.18197 * 7 6 4 9 9 H 1.07996 * 119.99705 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00071 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99834 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00203 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47169 * 59.99587 * 12 10 8 14 14 H 1.48495 * 109.47454 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47140 * 299.99925 * 12 10 8 16 16 C 1.39927 * 120.00055 * 175.92905 * 6 4 2 17 17 C 1.38868 * 120.06997 * 6.84117 * 16 6 4 18 18 C 1.38113 * 119.93034 * 179.67953 * 17 16 6 19 19 C 1.38288 * 120.06826 * 0.61445 * 18 17 16 20 20 C 1.38273 * 120.13870 * 359.68142 * 19 18 17 21 21 C 1.38111 * 120.07587 * 359.97438 * 20 19 18 22 22 N 1.46902 * 109.47334 * 119.99912 * 2 1 3 23 23 C 1.47849 * 110.99855 * 52.65313 * 22 2 1 24 24 C 1.54904 * 104.79501 * 213.63698 * 23 22 2 25 25 C 1.55144 * 101.65399 * 37.06922 * 24 23 22 26 26 F 1.39899 * 110.70281 * 205.96210 * 25 24 23 27 27 C 1.47204 * 110.70519 * 82.73004 * 25 24 23 28 28 N 4.43731 * 44.01133 * 97.43560 * 2 1 3 29 29 C 1.47435 * 111.00118 * 291.81086 * 22 2 1 30 30 H 1.09001 * 109.47092 * 170.47844 * 1 2 3 31 31 H 1.09000 * 109.47392 * 290.47884 * 1 2 3 32 32 H 1.08995 * 109.46971 * 50.48335 * 1 2 3 33 33 H 1.09004 * 109.46962 * 213.17933 * 7 6 4 34 34 H 1.09007 * 109.46689 * 333.17644 * 7 6 4 35 35 H 0.97001 * 119.99636 * 180.02562 * 11 10 8 36 36 H 1.08002 * 120.03368 * 359.97292 * 17 16 6 37 37 H 1.07994 * 119.96849 * 180.34126 * 18 17 16 38 38 H 1.07999 * 119.92769 * 179.70334 * 19 18 17 39 39 H 1.08000 * 119.96600 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.04155 * 180.02562 * 21 20 19 41 41 H 1.09003 * 110.37202 * 332.46410 * 23 22 2 42 42 H 1.08999 * 110.37555 * 94.80577 * 23 22 2 43 43 H 1.08993 * 110.99183 * 278.97464 * 24 23 22 44 44 H 1.09010 * 111.02228 * 155.17211 * 24 23 22 45 45 H 1.08998 * 109.88719 * 242.66070 * 29 22 2 46 46 H 1.08998 * 109.88989 * 3.68337 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2199 -1.9084 -1.2050 6 7 2.2732 -0.0144 -2.3592 7 6 1.9626 1.4161 -2.4181 8 6 3.1876 2.2118 -2.0477 9 1 4.1055 1.7028 -1.7934 10 6 3.1362 3.5895 -2.0325 11 7 2.0182 4.2092 -2.3417 12 14 4.6544 4.5758 -1.5726 13 1 5.7517 4.2683 -2.5247 14 1 4.3396 6.0258 -1.6324 15 1 5.0791 4.2175 -0.1954 16 6 2.8199 -0.6582 -3.4749 17 6 2.9830 -2.0372 -3.4719 18 6 3.5168 -2.6704 -4.5772 19 6 3.9005 -1.9311 -5.6811 20 6 3.7450 -0.5572 -5.6848 21 6 3.2053 0.0812 -4.5854 22 7 2.0197 -0.6925 1.1994 23 6 1.4068 -2.0321 1.3251 24 6 1.2647 -2.2605 2.8506 25 6 0.8929 -0.8385 3.3472 26 9 1.2780 -0.6639 4.6807 27 6 -0.5488 -0.5904 3.1835 28 7 -1.6614 -0.3990 3.0571 29 6 1.7137 0.0799 2.4174 30 1 -0.3633 -1.0135 -0.1700 31 1 -0.3634 0.3595 0.9627 32 1 -0.3633 0.6539 -0.7928 33 1 1.6507 1.6788 -3.4290 34 1 1.1573 1.6421 -1.7191 35 1 1.9821 5.1785 -2.3313 36 1 2.6883 -2.6146 -2.6080 37 1 3.6388 -3.7434 -4.5777 38 1 4.3221 -2.4281 -6.5424 39 1 4.0452 0.0174 -6.5486 40 1 3.0838 1.1543 -4.5890 41 1 0.4278 -2.0479 0.8462 42 1 2.0569 -2.7894 0.8869 43 1 2.2077 -2.5918 3.2854 44 1 0.4665 -2.9707 3.0670 45 1 2.6393 0.3757 2.9112 46 1 1.1323 0.9650 2.1590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615637535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:45 Heat of formation + Delta-G solvation = 0.419968 kcal Electronic energy + Delta-G solvation = -31153.405566 eV Core-core repulsion = 26958.428171 eV Total energy + Delta-G solvation = -4194.977395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.11874 -42.08800 -40.47273 -38.96577 -37.53849 -36.94042 -34.62903 -34.36755 -31.69522 -31.04159 -30.28624 -29.84934 -29.09740 -26.08914 -25.15683 -24.19145 -23.51517 -23.02534 -21.89729 -20.31319 -19.69541 -18.75947 -18.40379 -17.89779 -17.57324 -17.01029 -16.71543 -16.42414 -16.32247 -16.20712 -15.68801 -15.40352 -15.13500 -15.01723 -14.85091 -14.72050 -14.40969 -14.28048 -14.17359 -14.01772 -13.74906 -13.65273 -13.48796 -13.38743 -13.22705 -13.14326 -13.00647 -12.76300 -12.60372 -12.45311 -12.28626 -12.16883 -12.07631 -11.98462 -11.91076 -11.77627 -10.87511 -10.64755 -10.10305 -9.71839 -9.43930 -8.74481 -8.22179 -6.38847 0.46054 0.63106 1.23700 1.24026 1.42836 1.44155 1.50769 1.61848 1.98908 2.15732 2.39541 2.85427 3.03209 3.07063 3.10511 3.12544 3.33021 3.51107 3.82978 4.00980 4.17415 4.21711 4.23133 4.24350 4.35055 4.38966 4.47600 4.56973 4.60472 4.69312 4.71150 4.75880 4.79226 4.87269 4.97386 5.03040 5.10706 5.12450 5.31362 5.47841 5.65102 5.67007 5.70968 5.75879 5.79773 5.84974 5.94983 6.02766 6.36951 6.46664 6.73995 7.16632 7.33424 8.81092 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008961 B = 0.004394 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.739840 B = 6370.432466 C = 8517.593462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 H 0.110 0.890 4 C 0.529 3.471 5 O -0.536 6.536 6 N -0.540 5.540 7 C 0.244 3.756 8 C -0.541 4.541 9 H 0.051 0.949 10 C 0.031 3.969 11 N -0.916 5.916 12 Si 0.951 3.049 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.140 3.860 17 C -0.193 4.193 18 C -0.106 4.106 19 C -0.151 4.151 20 C -0.105 4.105 21 C -0.166 4.166 22 N -0.506 5.506 23 C 0.039 3.961 24 C -0.125 4.125 25 C 0.211 3.789 26 F -0.168 7.168 27 C 0.201 3.799 28 N -0.419 5.419 29 C 0.029 3.971 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.044 0.956 35 H 0.269 0.731 36 H 0.172 0.828 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.132 0.868 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 -11.695 5.634 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.048 4.048 3 H 0.128 0.872 4 C 0.319 3.681 5 O -0.416 6.416 6 N -0.259 5.259 7 C 0.124 3.876 8 C -0.579 4.579 9 H 0.069 0.931 10 C -0.171 4.171 11 N -0.554 5.554 12 Si 0.777 3.223 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.045 3.955 17 C -0.213 4.213 18 C -0.124 4.124 19 C -0.170 4.170 20 C -0.124 4.124 21 C -0.187 4.187 22 N -0.230 5.230 23 C -0.088 4.088 24 C -0.164 4.164 25 C 0.188 3.812 26 F -0.148 7.148 27 C -0.119 4.119 28 N -0.094 5.094 29 C -0.100 4.100 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.188 0.812 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.132 0.868 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.150 0.850 44 H 0.130 0.870 45 H 0.150 0.850 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.525 -11.813 5.496 13.039 hybrid contribution 0.021 1.510 0.166 1.519 sum -0.504 -10.303 5.661 11.766 Atomic orbital electron populations 1.22354 0.94333 1.03027 1.03362 1.21799 0.94590 0.99510 0.88853 0.87191 1.20622 0.76617 0.86737 0.84100 1.90199 1.53166 1.15004 1.83227 1.45909 1.57210 1.11863 1.10953 1.19355 0.96611 0.73681 0.97982 1.21412 0.97264 0.91482 1.47775 0.93089 1.25531 0.98628 0.98346 0.94553 1.69989 1.27387 1.09817 1.48238 0.85698 0.79852 0.77514 0.79267 1.20103 1.20710 1.19175 1.18378 0.96920 0.92576 0.87647 1.22775 1.03054 0.93005 1.02441 1.21414 0.97548 1.00822 0.92633 1.21402 1.02369 0.93647 0.99587 1.21195 0.98272 0.95488 0.97432 1.21106 1.03346 1.00015 0.94206 1.63674 1.56511 1.03010 0.99788 1.23282 0.99396 0.90927 0.95198 1.23478 1.06291 0.91727 0.94911 1.19206 0.81003 1.01217 0.79791 1.92989 1.90839 1.96703 1.34259 1.29408 0.95068 0.93406 0.93998 1.81243 1.13137 1.08208 1.06775 1.23594 1.01176 0.95540 0.89682 0.91110 0.91160 0.91600 0.95742 0.93855 0.92170 0.81182 0.83645 0.83308 0.84132 0.86844 0.92849 0.87917 0.85022 0.86990 0.85023 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 8.22 71.98 0.59 -4.57 16 2 C 0.06 2.13 1.69 44.17 0.07 2.20 16 3 H 0.11 4.18 6.26 -2.39 -0.01 4.17 16 4 C 0.53 20.31 6.75 87.66 0.59 20.90 16 5 O -0.54 -20.40 10.79 -3.04 -0.03 -20.43 16 6 N -0.54 -22.84 2.68 -635.28 -1.71 -24.54 16 7 C 0.24 11.32 4.09 85.63 0.35 11.67 16 8 C -0.54 -27.11 8.53 25.60 0.22 -26.90 16 9 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 10 C 0.03 1.55 5.46 84.65 0.46 2.01 16 11 N -0.92 -48.44 13.29 21.45 0.28 -48.15 16 12 Si 0.95 40.58 29.54 68.60 2.03 42.60 16 13 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 16 C 0.14 5.74 6.49 38.15 0.25 5.99 16 17 C -0.19 -7.09 9.05 22.39 0.20 -6.89 16 18 C -0.11 -3.14 10.04 22.25 0.22 -2.92 16 19 C -0.15 -4.18 10.04 22.29 0.22 -3.95 16 20 C -0.11 -3.34 10.04 22.25 0.22 -3.12 16 21 C -0.17 -6.57 9.08 22.39 0.20 -6.36 16 22 N -0.51 -13.73 5.09 -864.77 -4.40 -18.14 16 23 C 0.04 0.88 4.85 86.77 0.42 1.30 16 24 C -0.13 -1.94 6.35 31.98 0.20 -1.74 16 25 C 0.21 4.00 1.60 -11.42 -0.02 3.98 16 26 F -0.17 -3.15 16.93 44.97 0.76 -2.39 16 27 C 0.20 4.66 12.31 89.44 1.10 5.76 16 28 N -0.42 -11.55 18.36 20.01 0.37 -11.18 16 29 C 0.03 0.65 5.75 86.65 0.50 1.15 16 30 H 0.07 2.03 6.24 -2.39 -0.01 2.01 16 31 H 0.07 1.95 4.62 -2.39 -0.01 1.94 16 32 H 0.07 2.14 7.05 -2.39 -0.02 2.12 16 33 H 0.02 1.23 6.72 -2.38 -0.02 1.22 16 34 H 0.04 2.02 5.36 -2.38 -0.01 2.01 16 35 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 36 H 0.17 6.47 4.54 -61.68 -0.28 6.19 16 37 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.11 4.97 6.20 -2.91 -0.02 4.95 16 41 H 0.05 1.30 5.28 -2.39 -0.01 1.29 16 42 H 0.10 2.55 7.12 -2.39 -0.02 2.54 16 43 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 1.35 8.02 -2.38 -0.02 1.33 16 45 H 0.13 2.54 8.10 -2.39 -0.02 2.52 16 46 H 0.08 1.77 6.34 -2.39 -0.02 1.76 16 Total: -1.00 -59.08 368.62 3.88 -55.19 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.77 Total: 28.51 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.82 Total: -1.48 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -5.46 Total: -102.01 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.03 Total: -20.43 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.76 Total: -2.39 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Total: -59.08 3.88 -55.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615637535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.612 kcal (2) G-P(sol) polarization free energy of solvation -59.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds