Wall clock time and date at job start Wed Apr 1 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47268 * 2 1 4 4 O 1.42903 * 109.46835 * 239.99918 * 2 1 3 5 5 C 1.35878 * 117.00004 * 84.77014 * 4 2 1 6 6 C 1.38831 * 119.93549 * 354.61837 * 5 4 2 7 7 C 1.37914 * 120.05943 * 180.27403 * 6 5 4 8 8 C 1.39351 * 119.93454 * 359.46228 * 7 6 5 9 9 C 1.48432 * 120.05872 * 180.26958 * 8 7 6 10 10 N 1.34051 * 126.67716 * 180.31980 * 9 8 7 11 11 N 1.28985 * 107.27264 * 179.97438 * 10 9 8 12 12 N 1.28734 * 108.94192 * 359.97438 * 11 10 9 13 13 H 0.97005 * 125.33675 * 179.97438 * 12 11 10 14 14 N 1.28872 * 109.32140 * 359.75009 * 12 11 10 15 15 C 1.39341 * 119.87939 * 0.56197 * 8 7 6 16 16 C 1.37912 * 119.93683 * 359.71029 * 15 8 7 17 17 C 1.50695 * 109.47099 * 120.00089 * 2 1 3 18 18 O 1.21281 * 119.99854 * 119.99975 * 17 2 1 19 19 N 1.34774 * 120.00076 * 299.99717 * 17 2 1 20 20 C 1.46501 * 120.00151 * 179.97438 * 19 17 2 21 21 C 1.52999 * 109.47298 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47265 * 180.02562 * 21 20 19 23 23 C 1.50697 * 109.47242 * 179.97438 * 22 21 20 24 24 H 1.08007 * 120.00018 * 0.02562 * 23 22 21 25 25 C 1.37876 * 120.00343 * 179.97438 * 23 22 21 26 26 N 1.31515 * 119.99674 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00303 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47324 * 59.99876 * 27 25 23 29 29 H 1.48499 * 109.47137 * 180.02562 * 27 25 23 30 30 H 1.48508 * 109.46894 * 299.99839 * 27 25 23 31 31 H 1.08991 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46725 * 300.00546 * 1 2 3 33 33 H 1.09002 * 109.47000 * 59.99894 * 1 2 3 34 34 H 1.08001 * 119.96742 * 0.02562 * 6 5 4 35 35 H 1.08000 * 120.03171 * 179.72504 * 7 6 5 36 36 H 1.07993 * 120.03231 * 179.72776 * 15 8 7 37 37 H 1.07997 * 119.97366 * 179.97438 * 16 15 8 38 38 H 0.96999 * 120.00123 * 0.02562 * 19 17 2 39 39 H 1.09006 * 109.46770 * 299.99905 * 20 19 17 40 40 H 1.08997 * 109.46748 * 59.99991 * 20 19 17 41 41 H 1.09002 * 109.46996 * 300.00073 * 21 20 19 42 42 H 1.09003 * 109.46793 * 59.99841 * 21 20 19 43 43 H 1.09002 * 109.47110 * 299.99926 * 22 21 20 44 44 H 1.08994 * 109.47275 * 59.99959 * 22 21 20 45 45 H 0.97005 * 120.00379 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1078 0.0612 -2.3052 6 6 1.6513 1.3721 -2.3266 7 6 1.7479 2.1186 -3.4822 8 6 2.3147 1.5593 -4.6258 9 6 2.4256 2.3622 -5.8694 10 7 2.9387 1.9583 -7.0401 11 7 2.8484 2.9497 -7.8602 12 7 2.3039 3.9459 -7.2532 13 1 2.1232 4.8131 -7.6486 14 7 2.0324 3.6089 -6.0394 15 6 2.7717 0.2432 -4.6016 16 6 2.6674 -0.5004 -3.4448 17 6 2.0323 -0.7104 1.2304 18 8 2.7296 -1.6965 1.1191 19 7 1.7068 -0.2500 2.4545 20 6 2.1947 -0.9409 3.6507 21 6 1.6843 -0.2199 4.8999 22 6 2.1943 -0.9412 6.1492 23 6 1.6922 -0.2307 7.3796 24 1 1.0709 0.6473 7.2805 25 6 2.0248 -0.7020 8.6319 26 7 2.7800 -1.7719 8.7525 27 14 1.4018 0.1783 10.1571 28 1 -0.0832 0.1784 10.1567 29 1 1.8969 -0.5217 11.3696 30 1 1.8969 1.5784 10.1575 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.2163 1.8065 -1.4385 35 1 1.3885 3.1369 -3.4996 36 1 3.2074 -0.1940 -5.4878 37 1 3.0210 -1.5206 -3.4255 38 1 1.1489 0.5385 2.5436 39 1 1.8308 -1.9684 3.6505 40 1 3.2846 -0.9414 3.6508 41 1 2.0477 0.8077 4.9003 42 1 0.5943 -0.2199 4.8995 43 1 1.8313 -1.9689 6.1490 44 1 3.2843 -0.9409 6.1493 45 1 3.0144 -2.1034 9.6335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736167876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:18 Heat of formation + Delta-G solvation = 63.751365 kcal Electronic energy + Delta-G solvation = -27762.109728 eV Core-core repulsion = 23589.798550 eV Total energy + Delta-G solvation = -4172.311178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.84559 -40.94111 -39.48857 -37.85574 -35.48326 -34.73242 -33.85322 -33.51194 -32.52140 -31.44813 -30.86408 -29.96456 -26.91445 -25.32281 -25.17694 -24.27308 -23.34668 -22.63984 -21.79730 -20.80989 -20.04630 -19.56814 -18.71471 -17.53730 -17.44493 -16.90212 -16.39867 -16.04014 -15.99711 -15.26478 -15.11009 -14.98836 -14.49530 -14.32100 -14.11977 -13.87267 -13.80385 -13.47192 -13.16612 -13.07506 -12.70793 -12.42890 -12.32166 -12.21602 -11.92422 -11.89632 -11.75909 -11.65684 -11.56255 -11.16220 -10.91966 -10.87905 -10.78865 -10.65805 -9.92168 -9.91494 -9.47889 -9.42229 -9.17093 -8.91927 -8.48772 -8.40038 -6.04648 -4.08224 0.34710 0.79397 0.91857 1.82687 1.95545 2.38705 2.56892 3.28626 3.29732 3.34958 3.36252 3.37996 3.46477 3.78739 4.25223 4.41221 4.45191 4.47384 4.51717 4.62250 4.77363 4.86652 5.00611 5.04397 5.16386 5.24449 5.26511 5.31105 5.58386 5.62447 5.69516 5.70364 5.78899 5.86536 5.94986 6.03392 6.08539 6.22416 6.34317 6.52563 6.72808 6.93371 6.96180 7.52834 7.59315 7.71511 7.73912 7.93334 8.20267 8.34271 8.98100 9.56167 11.06503 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.001410 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.096591 B =19847.245142 C =20390.914068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.064 3.936 3 H 0.101 0.899 4 O -0.279 6.279 5 C 0.158 3.842 6 C -0.217 4.217 7 C -0.035 4.035 8 C -0.066 4.066 9 C 0.229 3.771 10 N -0.271 5.271 11 N -0.050 5.050 12 N -0.229 5.229 13 H 0.475 0.525 14 N -0.299 5.299 15 C -0.033 4.033 16 C -0.151 4.151 17 C 0.512 3.488 18 O -0.519 6.519 19 N -0.720 5.720 20 C 0.117 3.883 21 C -0.121 4.121 22 C 0.024 3.976 23 C -0.525 4.525 24 H 0.055 0.945 25 C 0.058 3.942 26 N -0.893 5.893 27 Si 0.893 3.107 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.277 1.277 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.399 0.601 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 12.070 -31.877 34.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 H 0.119 0.881 4 O -0.190 6.190 5 C 0.111 3.889 6 C -0.236 4.236 7 C -0.055 4.055 8 C -0.070 4.070 9 C -0.050 4.050 10 N -0.144 5.144 11 N -0.045 5.045 12 N -0.075 5.075 13 H 0.329 0.671 14 N -0.151 5.151 15 C -0.053 4.053 16 C -0.170 4.170 17 C 0.295 3.705 18 O -0.394 6.394 19 N -0.372 5.372 20 C -0.005 4.005 21 C -0.159 4.159 22 C -0.014 4.014 23 C -0.563 4.563 24 H 0.073 0.927 25 C -0.144 4.144 26 N -0.532 5.532 27 Si 0.721 3.279 28 H -0.202 1.202 29 H -0.212 1.212 30 H -0.203 1.203 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.233 0.767 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.842 11.101 -32.411 34.474 hybrid contribution -0.904 1.619 1.214 2.216 sum -4.746 12.719 -31.196 34.022 Atomic orbital electron populations 1.22367 0.92380 1.04779 1.04000 1.22326 0.95914 0.97204 0.84160 0.88100 1.86251 1.80175 1.36972 1.15627 1.19309 0.92814 0.90054 0.86725 1.21250 1.07959 0.94314 1.00070 1.20917 0.94413 0.99639 0.90540 1.17094 1.07807 0.93395 0.88715 1.23654 0.97803 0.88590 0.94953 1.76087 1.19067 1.19659 0.99631 1.78917 1.11847 0.91879 1.21859 1.47721 1.38318 1.15537 1.05899 0.67062 1.74928 1.23108 1.15945 1.01119 1.20981 0.94921 0.91642 0.97763 1.20418 1.04061 1.01961 0.90523 1.19961 0.81213 0.85166 0.84128 1.90759 1.36763 1.25453 1.86391 1.46095 1.53481 1.32159 1.05508 1.21717 0.99460 0.96630 0.82688 1.21901 1.00251 0.99551 0.94169 1.19027 0.96726 0.95716 0.89921 1.21153 1.31841 1.12395 0.90922 0.92693 1.25022 0.95129 0.95031 0.99188 1.69952 1.36637 1.22843 1.23737 0.86642 0.79162 0.79736 0.82346 1.20241 1.21246 1.20255 0.90390 0.89888 0.90571 0.84331 0.84632 0.83888 0.83940 0.76708 0.91480 0.91507 0.92643 0.92619 0.96216 0.96228 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.06 37.16 0.34 -0.96 16 2 C 0.06 0.63 2.64 -27.88 -0.07 0.56 16 3 H 0.10 0.74 6.31 -51.93 -0.33 0.41 16 4 O -0.28 -3.30 9.33 -39.27 -0.37 -3.67 16 5 C 0.16 1.54 6.60 -39.14 -0.26 1.28 16 6 C -0.22 -1.67 8.22 -39.48 -0.32 -2.00 16 7 C -0.03 -0.26 9.69 -39.29 -0.38 -0.64 16 8 C -0.07 -0.57 5.88 -104.87 -0.62 -1.19 16 9 C 0.23 2.08 7.93 -156.30 -1.24 0.84 16 10 N -0.27 -2.64 12.23 32.15 0.39 -2.25 16 11 N -0.05 -0.40 13.47 60.35 0.81 0.41 16 12 N -0.23 -1.20 7.90 60.35 0.48 -0.72 16 13 H 0.48 0.20 8.96 -340.36 -3.05 -2.86 16 14 N -0.30 -2.26 12.08 32.17 0.39 -1.87 16 15 C -0.03 -0.27 9.70 -39.29 -0.38 -0.65 16 16 C -0.15 -1.35 9.97 -39.48 -0.39 -1.75 16 17 C 0.51 7.13 7.23 -10.99 -0.08 7.05 16 18 O -0.52 -9.75 16.50 -14.35 -0.24 -9.99 16 19 N -0.72 -9.25 5.45 -60.29 -0.33 -9.58 16 20 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 21 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 22 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 23 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 24 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 25 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 26 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 27 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 30 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.46 7.56 -51.93 -0.39 0.06 16 33 H 0.08 0.44 6.89 -51.93 -0.36 0.09 16 34 H 0.14 0.78 5.40 -52.49 -0.28 0.50 16 35 H 0.14 0.82 7.88 -52.49 -0.41 0.41 16 36 H 0.14 1.02 7.88 -52.49 -0.41 0.60 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.40 3.78 7.89 -40.82 -0.32 3.46 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -35.91 388.39 -9.90 -45.82 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -8.49 Total: -3.85 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -4.12 Total: -10.57 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 2.48 Total: -39.68 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.60 Total: -13.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.91 -9.90 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736167876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.568 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds