Wall clock time and date at job start Wed Apr 1 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47268 * 2 1 4 4 O 1.42903 * 109.46835 * 239.99918 * 2 1 3 5 5 C 1.35878 * 117.00004 * 84.77014 * 4 2 1 6 6 C 1.38831 * 119.93549 * 354.61837 * 5 4 2 7 7 C 1.37914 * 120.05943 * 180.27403 * 6 5 4 8 8 C 1.39351 * 119.93454 * 359.46228 * 7 6 5 9 9 C 1.48432 * 120.05872 * 180.26958 * 8 7 6 10 10 N 1.34051 * 126.67716 * 180.31980 * 9 8 7 11 11 N 1.28985 * 107.27264 * 179.97438 * 10 9 8 12 12 N 1.28734 * 108.94192 * 359.97438 * 11 10 9 13 13 H 0.97005 * 125.33675 * 179.97438 * 12 11 10 14 14 N 1.28872 * 109.32140 * 359.75009 * 12 11 10 15 15 C 1.39341 * 119.87939 * 0.56197 * 8 7 6 16 16 C 1.37912 * 119.93683 * 359.71029 * 15 8 7 17 17 C 1.50695 * 109.47099 * 120.00089 * 2 1 3 18 18 O 1.21281 * 119.99854 * 119.99975 * 17 2 1 19 19 N 1.34774 * 120.00076 * 299.99717 * 17 2 1 20 20 C 1.46501 * 120.00151 * 179.97438 * 19 17 2 21 21 C 1.52999 * 109.47298 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47265 * 180.02562 * 21 20 19 23 23 C 1.50697 * 109.47242 * 179.97438 * 22 21 20 24 24 H 1.08007 * 120.00018 * 0.02562 * 23 22 21 25 25 C 1.37876 * 120.00343 * 179.97438 * 23 22 21 26 26 N 1.31515 * 119.99674 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00303 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47324 * 59.99876 * 27 25 23 29 29 H 1.48499 * 109.47137 * 180.02562 * 27 25 23 30 30 H 1.48508 * 109.46894 * 299.99839 * 27 25 23 31 31 H 1.08991 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46725 * 300.00546 * 1 2 3 33 33 H 1.09002 * 109.47000 * 59.99894 * 1 2 3 34 34 H 1.08001 * 119.96742 * 0.02562 * 6 5 4 35 35 H 1.08000 * 120.03171 * 179.72504 * 7 6 5 36 36 H 1.07993 * 120.03231 * 179.72776 * 15 8 7 37 37 H 1.07997 * 119.97366 * 179.97438 * 16 15 8 38 38 H 0.96999 * 120.00123 * 0.02562 * 19 17 2 39 39 H 1.09006 * 109.46770 * 299.99905 * 20 19 17 40 40 H 1.08997 * 109.46748 * 59.99991 * 20 19 17 41 41 H 1.09002 * 109.46996 * 300.00073 * 21 20 19 42 42 H 1.09003 * 109.46793 * 59.99841 * 21 20 19 43 43 H 1.09002 * 109.47110 * 299.99926 * 22 21 20 44 44 H 1.08994 * 109.47275 * 59.99959 * 22 21 20 45 45 H 0.97005 * 120.00379 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1078 0.0612 -2.3052 6 6 1.6513 1.3721 -2.3266 7 6 1.7479 2.1186 -3.4822 8 6 2.3147 1.5593 -4.6258 9 6 2.4256 2.3622 -5.8694 10 7 2.9387 1.9583 -7.0401 11 7 2.8484 2.9497 -7.8602 12 7 2.3039 3.9459 -7.2532 13 1 2.1232 4.8131 -7.6486 14 7 2.0324 3.6089 -6.0394 15 6 2.7717 0.2432 -4.6016 16 6 2.6674 -0.5004 -3.4448 17 6 2.0323 -0.7104 1.2304 18 8 2.7296 -1.6965 1.1191 19 7 1.7068 -0.2500 2.4545 20 6 2.1947 -0.9409 3.6507 21 6 1.6843 -0.2199 4.8999 22 6 2.1943 -0.9412 6.1492 23 6 1.6922 -0.2307 7.3796 24 1 1.0709 0.6473 7.2805 25 6 2.0248 -0.7020 8.6319 26 7 2.7800 -1.7719 8.7525 27 14 1.4018 0.1783 10.1571 28 1 -0.0832 0.1784 10.1567 29 1 1.8969 -0.5217 11.3696 30 1 1.8969 1.5784 10.1575 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.2163 1.8065 -1.4385 35 1 1.3885 3.1369 -3.4996 36 1 3.2074 -0.1940 -5.4878 37 1 3.0210 -1.5206 -3.4255 38 1 1.1489 0.5385 2.5436 39 1 1.8308 -1.9684 3.6505 40 1 3.2846 -0.9414 3.6508 41 1 2.0477 0.8077 4.9003 42 1 0.5943 -0.2199 4.8995 43 1 1.8313 -1.9689 6.1490 44 1 3.2843 -0.9409 6.1493 45 1 3.0144 -2.1034 9.6335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736167876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:17 Heat of formation + Delta-G solvation = 39.105757 kcal Electronic energy + Delta-G solvation = -27763.178442 eV Core-core repulsion = 23589.798550 eV Total energy + Delta-G solvation = -4173.379892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.42327 -41.73989 -40.47318 -38.62661 -36.95023 -35.32754 -35.26179 -34.44885 -33.64611 -32.52798 -31.84415 -30.61899 -28.59631 -26.15614 -25.76894 -25.28392 -24.45918 -23.55325 -22.49629 -22.32360 -21.17912 -20.17202 -19.41440 -18.64026 -18.21525 -18.10862 -17.54154 -17.06954 -16.91654 -16.49048 -16.29468 -16.15209 -15.64566 -15.30391 -15.03320 -14.84223 -14.47390 -14.26243 -14.19266 -13.91979 -13.75244 -13.67788 -13.48626 -13.29084 -13.01096 -12.89299 -12.70667 -12.53830 -12.46152 -12.40582 -12.31472 -12.20341 -11.79333 -11.64971 -11.55418 -11.50738 -11.23413 -10.80640 -10.52868 -10.16481 -10.06946 -9.15066 -8.17539 -6.29117 -0.26510 0.20037 0.32306 1.30295 1.43315 1.44727 1.46249 1.46610 1.53874 1.56887 2.42792 2.54287 2.71877 2.75842 3.16494 3.19154 3.49225 3.71457 3.85819 3.87713 3.95619 4.15968 4.18876 4.23108 4.24878 4.42718 4.45940 4.56321 4.58744 4.69268 4.72544 4.95887 4.97688 5.01574 5.14545 5.19246 5.20302 5.26026 5.38250 5.41478 5.53984 5.61350 5.64116 5.72917 5.86244 6.23055 6.26673 6.51978 6.88690 7.14796 7.16007 7.40714 8.94240 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.001410 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.096591 B =19847.245142 C =20390.914068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.070 3.930 3 H 0.134 0.866 4 O -0.309 6.309 5 C 0.140 3.860 6 C -0.209 4.209 7 C -0.031 4.031 8 C -0.073 4.073 9 C 0.217 3.783 10 N -0.298 5.298 11 N -0.059 5.059 12 N -0.202 5.202 13 H 0.494 0.506 14 N -0.297 5.297 15 C -0.035 4.035 16 C -0.162 4.162 17 C 0.508 3.492 18 O -0.576 6.576 19 N -0.703 5.703 20 C 0.130 3.870 21 C -0.101 4.101 22 C 0.022 3.978 23 C -0.541 4.541 24 H 0.069 0.931 25 C -0.003 4.003 26 N -0.935 5.935 27 Si 0.966 3.034 28 H -0.265 1.265 29 H -0.288 1.288 30 H -0.265 1.265 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.165 0.835 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.420 0.580 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.072 0.928 43 H -0.009 1.009 44 H -0.009 1.009 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.619 15.483 -32.423 36.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 H 0.151 0.849 4 O -0.221 6.221 5 C 0.094 3.906 6 C -0.227 4.227 7 C -0.051 4.051 8 C -0.077 4.077 9 C -0.062 4.062 10 N -0.170 5.170 11 N -0.054 5.054 12 N -0.052 5.052 13 H 0.353 0.647 14 N -0.150 5.150 15 C -0.055 4.055 16 C -0.181 4.181 17 C 0.294 3.706 18 O -0.455 6.455 19 N -0.357 5.357 20 C 0.006 3.994 21 C -0.139 4.139 22 C -0.016 4.016 23 C -0.579 4.579 24 H 0.087 0.913 25 C -0.201 4.201 26 N -0.576 5.576 27 Si 0.791 3.209 28 H -0.190 1.190 29 H -0.214 1.214 30 H -0.190 1.190 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.182 0.818 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.010 0.990 44 H 0.009 0.991 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.843 14.579 -32.993 36.541 hybrid contribution -0.269 0.596 1.287 1.444 sum -6.113 15.175 -31.706 35.678 Atomic orbital electron populations 1.22405 0.90047 1.04400 1.06200 1.22404 0.97399 0.97494 0.81648 0.84852 1.86209 1.80950 1.38394 1.16565 1.19477 0.93995 0.90988 0.86162 1.21463 1.07027 0.93216 1.00986 1.21120 0.93741 1.00349 0.89939 1.17267 1.07866 0.93428 0.89140 1.23766 0.98329 0.89123 0.95021 1.76070 1.20136 1.20633 1.00191 1.78863 1.12449 0.92249 1.21876 1.47791 1.36416 1.15887 1.05155 0.64716 1.74885 1.22928 1.15344 1.01802 1.21021 0.94978 0.91802 0.97665 1.20512 1.04468 1.02157 0.90941 1.20785 0.79973 0.84460 0.85346 1.90736 1.39375 1.28149 1.87243 1.45789 1.53283 1.32404 1.04233 1.21274 0.98398 0.96025 0.83722 1.21599 1.01001 0.99458 0.91820 1.18956 0.94984 0.94942 0.92732 1.21669 1.31623 1.12766 0.91871 0.91308 1.26014 0.95299 0.95771 1.02968 1.70110 1.38257 1.24709 1.24488 0.85484 0.79005 0.78694 0.77752 1.18967 1.21389 1.19002 0.92122 0.87515 0.88472 0.81784 0.82784 0.83454 0.84219 0.74212 0.93180 0.93211 0.90996 0.90925 0.99032 0.99058 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.06 71.98 0.65 -1.35 16 2 C 0.07 1.23 2.64 29.85 0.08 1.31 16 3 H 0.13 1.46 6.31 -2.39 -0.02 1.44 16 4 O -0.31 -7.13 9.33 -73.14 -0.68 -7.81 16 5 C 0.14 2.58 6.60 22.55 0.15 2.73 16 6 C -0.21 -2.65 8.22 22.33 0.18 -2.46 16 7 C -0.03 -0.40 9.69 22.46 0.22 -0.18 16 8 C -0.07 -1.17 5.88 -20.03 -0.12 -1.28 16 9 C 0.22 3.65 7.93 137.37 1.09 4.74 16 10 N -0.30 -5.60 12.23 -52.19 -0.64 -6.24 16 11 N -0.06 -0.88 13.47 37.02 0.50 -0.38 16 12 N -0.20 -1.73 7.90 37.02 0.29 -1.44 16 13 H 0.49 -0.72 8.96 -347.53 -3.12 -3.83 16 14 N -0.30 -3.88 12.08 -52.14 -0.63 -4.51 16 15 C -0.03 -0.56 9.70 22.46 0.22 -0.35 16 16 C -0.16 -2.92 9.97 22.33 0.22 -2.70 16 17 C 0.51 13.82 7.23 87.66 0.63 14.45 16 18 O -0.58 -22.34 16.50 16.01 0.26 -22.07 16 19 N -0.70 -16.98 5.45 -463.06 -2.52 -19.50 16 20 C 0.13 4.31 5.67 86.38 0.49 4.80 16 21 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 22 C 0.02 1.09 4.97 29.85 0.15 1.24 16 23 C -0.54 -29.41 9.11 25.60 0.23 -29.18 16 24 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 25 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 26 N -0.94 -56.55 13.29 21.45 0.28 -56.27 16 27 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 28 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 30 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 0.72 7.56 -2.39 -0.02 0.70 16 33 H 0.10 0.76 6.89 -2.39 -0.02 0.74 16 34 H 0.16 1.13 5.40 -2.91 -0.02 1.12 16 35 H 0.15 1.34 7.88 -2.91 -0.02 1.32 16 36 H 0.15 2.15 7.88 -2.91 -0.02 2.13 16 37 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.42 6.57 7.89 -92.71 -0.73 5.83 16 39 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -80.83 388.39 0.93 -79.91 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.79 Total: 4.78 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 4.82 Total: -11.40 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.72 Total: -88.34 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.42 Total: -29.89 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -80.83 0.93 -79.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736167876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.011 kcal (2) G-P(sol) polarization free energy of solvation -80.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds