Wall clock time and date at job start Wed Apr 1 2020 03:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46904 * 2 1 4 4 C 1.46495 * 119.99756 * 274.09209 * 3 2 1 5 5 C 1.50700 * 109.47450 * 269.99892 * 4 3 2 6 6 H 1.08008 * 119.99673 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00356 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47317 * 60.00168 * 9 7 5 11 11 H 1.48508 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47144 * 299.99613 * 9 7 5 13 13 C 1.34771 * 119.99999 * 94.09433 * 3 2 1 14 14 O 1.21281 * 120.00047 * 185.31978 * 13 3 2 15 15 C 1.50700 * 120.00095 * 5.31189 * 13 3 2 16 16 H 1.08994 * 109.47243 * 314.02390 * 15 13 3 17 17 C 1.53008 * 109.46727 * 74.02022 * 15 13 3 18 18 O 1.42901 * 109.47365 * 194.01818 * 15 13 3 19 19 C 1.35836 * 117.00302 * 156.34445 * 18 15 13 20 20 C 1.38602 * 120.11541 * 357.60980 * 19 18 15 21 21 C 1.38174 * 120.06025 * 180.25435 * 20 19 18 22 22 C 1.38385 * 120.29207 * 359.44416 * 21 20 19 23 23 C 1.38010 * 120.23947 * 0.55702 * 22 21 20 24 24 C 1.39274 * 119.93128 * 359.72319 * 23 22 21 25 25 C 1.48395 * 120.14324 * 179.97438 * 24 23 22 26 26 N 1.34071 * 126.67737 * 179.71186 * 25 24 23 27 27 N 1.28982 * 107.26624 * 179.83182 * 26 25 24 28 28 N 1.28734 * 108.95384 * 0.43403 * 27 26 25 29 29 H 0.96995 * 125.34454 * 179.76459 * 28 27 26 30 30 N 1.28876 * 109.31765 * 359.72024 * 28 27 26 31 31 H 1.08999 * 109.46916 * 299.99912 * 1 2 3 32 32 H 1.08993 * 109.47173 * 60.00375 * 1 2 3 33 33 H 1.08998 * 109.46461 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46916 * 240.00087 * 2 1 3 35 35 H 1.08999 * 109.47551 * 119.99690 * 2 1 3 36 36 H 1.08994 * 109.47644 * 30.00002 * 4 3 2 37 37 H 1.09002 * 109.47161 * 150.00372 * 4 3 2 38 38 H 0.97006 * 119.99762 * 180.02562 * 8 7 5 39 39 H 1.08999 * 109.47050 * 185.21545 * 17 15 13 40 40 H 1.09000 * 109.46923 * 305.22062 * 17 15 13 41 41 H 1.08996 * 109.46920 * 65.22194 * 17 15 13 42 42 H 1.07996 * 119.97006 * 359.97438 * 20 19 18 43 43 H 1.07997 * 119.84986 * 179.72331 * 21 20 19 44 44 H 1.08006 * 119.87930 * 180.30422 * 22 21 20 45 45 H 1.08000 * 120.03589 * 179.70264 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1771 2.1020 -1.2655 5 6 3.5677 1.8769 -1.8009 6 1 4.2635 1.2583 -1.2533 7 6 3.9517 2.4604 -2.9895 8 7 3.1042 3.2132 -3.6564 9 14 5.6752 2.1807 -3.6534 10 1 5.8883 0.7288 -3.8812 11 1 5.8366 2.9124 -4.9356 12 1 6.6710 2.6790 -2.6710 13 6 2.3215 1.9888 1.1642 14 8 2.6330 3.1609 1.1734 15 6 2.2733 1.2119 2.4545 16 1 1.3536 0.6281 2.4930 17 6 3.4778 0.2713 2.5287 18 8 2.3084 2.1188 3.5583 19 6 1.7913 1.6788 4.7348 20 6 1.2162 0.4202 4.8142 21 6 0.6858 -0.0242 6.0102 22 6 0.7355 0.7780 7.1368 23 6 1.3053 2.0333 7.0715 24 6 1.8376 2.4932 5.8695 25 6 2.4508 3.8424 5.7939 26 7 3.0038 4.4113 4.7132 27 7 3.4148 5.5823 5.0649 28 7 3.1509 5.7608 6.3122 29 1 3.3611 6.5591 6.8215 30 7 2.5629 4.7128 6.7778 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.4465 1.7356 -1.9865 37 1 2.0201 3.1677 -1.0988 38 1 3.3743 3.6235 -4.4930 39 1 3.3946 -0.3563 3.4161 40 1 3.5024 -0.3583 1.6393 41 1 4.3944 0.8585 2.5837 42 1 1.1786 -0.2119 3.9394 43 1 0.2345 -1.0037 6.0672 44 1 0.3233 0.4220 8.0694 45 1 1.3380 2.6585 7.9516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736534221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:39 Heat of formation + Delta-G solvation = 91.783350 kcal Electronic energy + Delta-G solvation = -30567.974684 eV Core-core repulsion = 26396.879064 eV Total energy + Delta-G solvation = -4171.095620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.28156 -40.57586 -39.02361 -37.28723 -35.26295 -34.30315 -33.56476 -32.89289 -31.70100 -30.67558 -30.09517 -29.76711 -27.13323 -24.90935 -24.65463 -24.19948 -23.11965 -22.77674 -21.69465 -21.40842 -19.27358 -18.61216 -18.15678 -16.99627 -16.50025 -16.47662 -16.36214 -15.81379 -15.41735 -15.04067 -14.61272 -14.42441 -14.24334 -14.21173 -13.69170 -13.40975 -13.25641 -12.98299 -12.81970 -12.40744 -12.22268 -12.12845 -12.01025 -11.77075 -11.74347 -11.54077 -11.24848 -11.19667 -11.18222 -10.92805 -10.90986 -10.87752 -10.73979 -10.65780 -10.49179 -10.10158 -9.62212 -9.02379 -8.78968 -8.39989 -8.20164 -7.64795 -6.01145 -4.06035 0.64129 1.22804 1.34011 2.32155 2.43342 2.92423 3.33686 3.35838 3.39112 3.44209 3.63522 3.74801 4.05941 4.25628 4.47058 4.65412 4.72594 4.81477 4.95478 5.04304 5.10713 5.18959 5.28238 5.33313 5.37300 5.37525 5.59065 5.60326 5.64127 5.68776 5.71507 5.80063 5.97162 6.08743 6.13891 6.22149 6.24615 6.26748 6.46403 6.47482 6.53062 7.04798 7.36384 7.49086 7.57427 7.95392 8.26021 8.34446 8.40159 8.92497 9.10353 9.58960 11.06891 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.003304 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.904683 B = 8471.758519 C =10036.929511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.595 5.595 4 C 0.249 3.751 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.511 3.489 14 O -0.504 6.504 15 C 0.060 3.940 16 H 0.090 0.910 17 C -0.175 4.175 18 O -0.253 6.253 19 C 0.178 3.822 20 C -0.220 4.220 21 C -0.056 4.056 22 C -0.169 4.169 23 C -0.041 4.041 24 C -0.057 4.057 25 C 0.220 3.780 26 N -0.223 5.223 27 N -0.052 5.052 28 N -0.238 5.238 29 H 0.471 0.529 30 N -0.307 5.307 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.984 -7.218 22.800 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.329 5.329 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.295 3.705 14 O -0.378 6.378 15 C 0.000 4.000 16 H 0.108 0.892 17 C -0.232 4.232 18 O -0.163 6.163 19 C 0.128 3.872 20 C -0.239 4.239 21 C -0.075 4.075 22 C -0.188 4.188 23 C -0.061 4.061 24 C -0.061 4.061 25 C -0.060 4.060 26 N -0.096 5.096 27 N -0.048 5.048 28 N -0.082 5.082 29 H 0.324 0.676 30 N -0.160 5.160 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.415 -5.739 22.213 23.573 hybrid contribution 0.761 -0.227 0.011 0.794 sum -4.654 -5.965 22.224 23.477 Atomic orbital electron populations 1.22228 0.96679 1.01444 1.02539 1.21585 0.93755 0.84435 1.02846 1.48150 1.63920 1.13387 1.07424 1.19277 0.96701 0.93306 0.77693 1.21403 0.98272 1.30929 1.06091 0.92455 1.24922 0.97499 0.94887 0.96688 1.69926 1.35144 1.32208 1.16013 0.86574 0.84668 0.78137 0.78136 1.20269 1.21204 1.20142 1.19647 0.79318 0.87627 0.83925 1.90756 1.45642 1.15492 1.85908 1.22496 1.00370 0.91066 0.86073 0.89240 1.22334 0.98411 0.99216 1.03252 1.86504 1.74161 1.40038 1.15561 1.19046 0.90569 0.91705 0.85890 1.21273 1.05990 0.96336 1.00257 1.21093 0.95345 0.99249 0.91802 1.20934 1.04050 0.94613 0.99173 1.20978 0.93962 0.95685 0.95490 1.16513 1.07511 0.88920 0.93151 1.23442 1.00455 0.96263 0.85813 1.76591 1.11204 0.98807 1.22989 1.79101 1.16511 1.13257 0.95884 1.47751 1.37590 1.14882 1.08013 0.67551 1.74792 1.17928 0.96639 1.26603 0.93188 0.91751 0.92065 0.89752 0.91509 0.94842 0.93681 0.92672 0.91385 0.89708 0.90390 0.84402 0.85286 0.85274 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.85 16 2 C 0.10 1.50 5.56 -4.04 -0.02 1.48 16 3 N -0.59 -12.50 2.46 -175.06 -0.43 -12.93 16 4 C 0.25 6.52 5.22 -5.20 -0.03 6.49 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.51 11.07 6.97 -10.99 -0.08 10.99 16 14 O -0.50 -13.62 16.11 -13.95 -0.22 -13.85 16 15 C 0.06 0.97 1.80 -27.88 -0.05 0.92 16 16 H 0.09 1.16 4.94 -51.93 -0.26 0.90 16 17 C -0.17 -2.39 8.86 37.16 0.33 -2.06 16 18 O -0.25 -4.46 7.72 -38.73 -0.30 -4.76 16 19 C 0.18 2.53 6.58 -38.88 -0.26 2.27 16 20 C -0.22 -2.35 8.37 -39.47 -0.33 -2.68 16 21 C -0.06 -0.47 10.03 -39.55 -0.40 -0.87 16 22 C -0.17 -1.40 10.03 -39.61 -0.40 -1.80 16 23 C -0.04 -0.42 9.70 -39.28 -0.38 -0.80 16 24 C -0.06 -0.78 5.89 -104.76 -0.62 -1.39 16 25 C 0.22 3.39 7.91 -156.29 -1.24 2.15 16 26 N -0.22 -4.11 11.06 32.15 0.36 -3.76 16 27 N -0.05 -0.81 13.47 60.35 0.81 0.00 16 28 N -0.24 -2.63 7.90 60.35 0.48 -2.16 16 29 H 0.47 2.66 8.96 -340.36 -3.05 -0.39 16 30 N -0.31 -3.89 12.08 32.16 0.39 -3.50 16 31 H 0.05 0.64 7.96 -51.93 -0.41 0.22 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.07 0.82 4.58 -51.93 -0.24 0.58 16 36 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.07 0.73 7.30 -51.93 -0.38 0.35 16 40 H 0.08 1.09 6.28 -51.93 -0.33 0.76 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.14 1.25 5.61 -52.49 -0.29 0.96 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.14 1.17 7.88 -52.49 -0.41 0.76 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -37.93 380.66 -9.22 -47.15 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.25 Total: -2.17 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.50 Total: -0.73 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 2.34 Total: -48.35 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.52 Total: -18.61 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.93 -9.22 -47.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736534221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.935 kcal (2) G-P(sol) polarization free energy of solvation -37.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds