Wall clock time and date at job start Wed Apr 1 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46904 * 2 1 4 4 C 1.46495 * 119.99756 * 274.09209 * 3 2 1 5 5 C 1.50700 * 109.47450 * 269.99892 * 4 3 2 6 6 H 1.08008 * 119.99673 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00356 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47317 * 60.00168 * 9 7 5 11 11 H 1.48508 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47144 * 299.99613 * 9 7 5 13 13 C 1.34771 * 119.99999 * 94.09433 * 3 2 1 14 14 O 1.21281 * 120.00047 * 185.31978 * 13 3 2 15 15 C 1.50700 * 120.00095 * 5.31189 * 13 3 2 16 16 H 1.08994 * 109.47243 * 314.02390 * 15 13 3 17 17 C 1.53008 * 109.46727 * 74.02022 * 15 13 3 18 18 O 1.42901 * 109.47365 * 194.01818 * 15 13 3 19 19 C 1.35836 * 117.00302 * 156.34445 * 18 15 13 20 20 C 1.38602 * 120.11541 * 357.60980 * 19 18 15 21 21 C 1.38174 * 120.06025 * 180.25435 * 20 19 18 22 22 C 1.38385 * 120.29207 * 359.44416 * 21 20 19 23 23 C 1.38010 * 120.23947 * 0.55702 * 22 21 20 24 24 C 1.39274 * 119.93128 * 359.72319 * 23 22 21 25 25 C 1.48395 * 120.14324 * 179.97438 * 24 23 22 26 26 N 1.34071 * 126.67737 * 179.71186 * 25 24 23 27 27 N 1.28982 * 107.26624 * 179.83182 * 26 25 24 28 28 N 1.28734 * 108.95384 * 0.43403 * 27 26 25 29 29 H 0.96995 * 125.34454 * 179.76459 * 28 27 26 30 30 N 1.28876 * 109.31765 * 359.72024 * 28 27 26 31 31 H 1.08999 * 109.46916 * 299.99912 * 1 2 3 32 32 H 1.08993 * 109.47173 * 60.00375 * 1 2 3 33 33 H 1.08998 * 109.46461 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46916 * 240.00087 * 2 1 3 35 35 H 1.08999 * 109.47551 * 119.99690 * 2 1 3 36 36 H 1.08994 * 109.47644 * 30.00002 * 4 3 2 37 37 H 1.09002 * 109.47161 * 150.00372 * 4 3 2 38 38 H 0.97006 * 119.99762 * 180.02562 * 8 7 5 39 39 H 1.08999 * 109.47050 * 185.21545 * 17 15 13 40 40 H 1.09000 * 109.46923 * 305.22062 * 17 15 13 41 41 H 1.08996 * 109.46920 * 65.22194 * 17 15 13 42 42 H 1.07996 * 119.97006 * 359.97438 * 20 19 18 43 43 H 1.07997 * 119.84986 * 179.72331 * 21 20 19 44 44 H 1.08006 * 119.87930 * 180.30422 * 22 21 20 45 45 H 1.08000 * 120.03589 * 179.70264 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1771 2.1020 -1.2655 5 6 3.5677 1.8769 -1.8009 6 1 4.2635 1.2583 -1.2533 7 6 3.9517 2.4604 -2.9895 8 7 3.1042 3.2132 -3.6564 9 14 5.6752 2.1807 -3.6534 10 1 5.8883 0.7288 -3.8812 11 1 5.8366 2.9124 -4.9356 12 1 6.6710 2.6790 -2.6710 13 6 2.3215 1.9888 1.1642 14 8 2.6330 3.1609 1.1734 15 6 2.2733 1.2119 2.4545 16 1 1.3536 0.6281 2.4930 17 6 3.4778 0.2713 2.5287 18 8 2.3084 2.1188 3.5583 19 6 1.7913 1.6788 4.7348 20 6 1.2162 0.4202 4.8142 21 6 0.6858 -0.0242 6.0102 22 6 0.7355 0.7780 7.1368 23 6 1.3053 2.0333 7.0715 24 6 1.8376 2.4932 5.8695 25 6 2.4508 3.8424 5.7939 26 7 3.0038 4.4113 4.7132 27 7 3.4148 5.5823 5.0649 28 7 3.1509 5.7608 6.3122 29 1 3.3611 6.5591 6.8215 30 7 2.5629 4.7128 6.7778 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.4465 1.7356 -1.9865 37 1 2.0201 3.1677 -1.0988 38 1 3.3743 3.6235 -4.4930 39 1 3.3946 -0.3563 3.4161 40 1 3.5024 -0.3583 1.6393 41 1 4.3944 0.8585 2.5837 42 1 1.1786 -0.2119 3.9394 43 1 0.2345 -1.0037 6.0672 44 1 0.3233 0.4220 8.0694 45 1 1.3380 2.6585 7.9516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736534221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:38 Heat of formation + Delta-G solvation = 65.066053 kcal Electronic energy + Delta-G solvation = -30569.133233 eV Core-core repulsion = 26396.879064 eV Total energy + Delta-G solvation = -4172.254169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.36716 -41.70822 -40.39665 -38.35953 -36.97359 -35.37945 -34.96924 -34.57340 -33.00042 -31.58401 -31.50013 -30.65327 -29.06290 -26.11073 -25.80303 -25.34486 -24.80770 -23.97216 -22.65493 -22.55460 -20.30341 -20.09323 -19.19875 -18.58362 -18.08236 -17.87790 -17.50988 -17.01339 -16.67316 -16.58601 -15.92868 -15.79656 -15.43352 -15.18912 -14.84917 -14.63345 -14.58750 -14.34910 -14.01693 -13.84758 -13.50015 -13.34802 -13.24112 -13.18800 -13.09258 -12.85645 -12.62347 -12.51863 -12.45634 -12.32278 -12.22671 -12.14795 -12.03827 -11.88514 -11.80726 -11.73002 -11.69586 -10.63345 -10.49869 -9.79288 -9.45547 -9.10564 -8.21498 -6.36327 -0.22662 0.25471 0.46489 1.36171 1.41058 1.41688 1.48002 1.48503 1.69746 1.75888 2.38195 2.66722 2.76897 2.85388 3.08281 3.25922 3.47479 3.66132 3.91799 3.99716 4.02965 4.11590 4.31299 4.36326 4.41303 4.50250 4.53907 4.54314 4.60837 4.63938 4.74800 4.91723 4.98441 4.98936 5.05658 5.15106 5.23247 5.31777 5.40432 5.44222 5.55297 5.57753 5.67274 5.81765 5.87355 6.06844 6.38611 6.70835 6.76262 7.23673 7.28311 7.45684 8.85721 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.003304 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.904683 B = 8471.758519 C =10036.929511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.089 3.911 3 N -0.596 5.596 4 C 0.265 3.735 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.255 1.255 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.498 3.502 14 O -0.576 6.576 15 C 0.074 3.926 16 H 0.128 0.872 17 C -0.168 4.168 18 O -0.291 6.291 19 C 0.144 3.856 20 C -0.220 4.220 21 C -0.043 4.043 22 C -0.155 4.155 23 C -0.042 4.042 24 C -0.087 4.087 25 C 0.209 3.791 26 N -0.281 5.281 27 N -0.078 5.078 28 N -0.204 5.204 29 H 0.492 0.508 30 N -0.294 5.294 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.027 0.973 37 H -0.009 1.009 38 H 0.267 0.733 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.157 0.843 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 -11.184 25.547 28.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.033 4.033 3 N -0.329 5.329 4 C 0.144 3.856 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.179 1.179 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.285 3.715 14 O -0.455 6.455 15 C 0.015 3.985 16 H 0.145 0.855 17 C -0.225 4.225 18 O -0.203 6.203 19 C 0.095 3.905 20 C -0.238 4.238 21 C -0.062 4.062 22 C -0.173 4.173 23 C -0.062 4.062 24 C -0.091 4.091 25 C -0.070 4.070 26 N -0.152 5.152 27 N -0.073 5.073 28 N -0.055 5.055 29 H 0.350 0.650 30 N -0.148 5.148 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.045 0.955 37 H 0.009 0.991 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.174 0.826 43 H 0.188 0.812 44 H 0.184 0.816 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.185 -9.754 24.980 27.520 hybrid contribution 0.888 1.033 -0.654 1.511 sum -5.297 -8.721 24.325 26.379 Atomic orbital electron populations 1.22186 0.94609 1.03869 1.01554 1.21999 0.95454 0.81171 1.04664 1.48149 1.63647 1.15379 1.05729 1.18692 0.95914 0.90992 0.80039 1.21704 0.99088 1.31015 1.06377 0.92458 1.25871 1.01867 0.94425 0.97015 1.70059 1.37310 1.33057 1.16465 0.85480 0.78917 0.79228 0.77264 1.17922 1.20436 1.20652 1.20795 0.77526 0.87276 0.85892 1.90711 1.48717 1.18827 1.87215 1.22345 1.03045 0.90086 0.83052 0.85518 1.22337 0.95888 0.98693 1.05589 1.86464 1.75574 1.41353 1.16864 1.19402 0.92627 0.93644 0.84804 1.21533 1.05320 0.94882 1.02055 1.21588 0.93502 1.00603 0.90504 1.21416 1.01947 0.93245 1.00726 1.21226 0.93561 0.96898 0.94508 1.16914 1.09131 0.88441 0.94625 1.23951 1.00319 0.97446 0.85334 1.76571 1.13441 1.00060 1.25176 1.79003 1.17677 1.13143 0.97501 1.47801 1.35403 1.15184 1.07084 0.64979 1.74757 1.17764 0.96499 1.25748 0.92650 0.94357 0.87787 0.90196 0.87378 0.95525 0.99081 0.92453 0.87430 0.88632 0.93402 0.82595 0.81226 0.81621 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.09 2.60 5.56 86.38 0.48 3.08 16 3 N -0.60 -25.96 2.46 -826.16 -2.03 -27.99 16 4 C 0.26 14.78 5.22 85.63 0.45 15.22 16 5 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 6 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 9 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 C 0.50 22.65 6.97 87.66 0.61 23.27 16 14 O -0.58 -33.86 16.11 15.62 0.25 -33.61 16 15 C 0.07 2.36 1.80 29.85 0.05 2.41 16 16 H 0.13 2.94 4.94 -2.39 -0.01 2.93 16 17 C -0.17 -4.35 8.86 71.98 0.64 -3.71 16 18 O -0.29 -10.57 7.72 -73.06 -0.56 -11.14 16 19 C 0.14 3.96 6.58 22.72 0.15 4.11 16 20 C -0.22 -3.88 8.37 22.34 0.19 -3.69 16 21 C -0.04 -0.49 10.03 22.29 0.22 -0.27 16 22 C -0.16 -1.81 10.03 22.25 0.22 -1.59 16 23 C -0.04 -0.75 9.70 22.47 0.22 -0.53 16 24 C -0.09 -2.34 5.89 -19.96 -0.12 -2.46 16 25 C 0.21 6.65 7.91 137.34 1.09 7.74 16 26 N -0.28 -11.09 11.06 -52.20 -0.58 -11.67 16 27 N -0.08 -2.61 13.47 37.02 0.50 -2.11 16 28 N -0.20 -4.63 7.90 37.02 0.29 -4.34 16 29 H 0.49 5.44 8.96 -347.53 -3.12 2.33 16 30 N -0.29 -7.47 12.08 -52.15 -0.63 -8.10 16 31 H 0.05 1.28 7.96 -2.39 -0.02 1.26 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 35 H 0.11 2.27 4.58 -2.39 -0.01 2.26 16 36 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 37 H -0.01 -0.59 7.36 -2.39 -0.02 -0.61 16 38 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 39 H 0.11 1.93 7.30 -2.39 -0.02 1.91 16 40 H 0.10 2.22 6.28 -2.39 -0.01 2.20 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.16 2.05 5.61 -2.91 -0.02 2.03 16 43 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 44 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 45 H 0.15 2.18 7.88 -2.91 -0.02 2.16 16 Total: -1.00 -93.47 380.66 3.13 -90.34 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -2.06 Total: 8.67 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.64 Total: 9.48 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -2.16 Total: -111.69 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.31 Total: -44.75 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -93.47 3.13 -90.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736534221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.406 kcal (2) G-P(sol) polarization free energy of solvation -93.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds