Wall clock time and date at job start Wed Apr 1 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47276 * 2 1 4 4 C 1.46505 * 119.99811 * 273.47741 * 3 2 1 5 5 C 1.50700 * 109.46796 * 273.81499 * 4 3 2 6 6 H 1.07992 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99540 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00345 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47073 * 90.00129 * 9 7 5 11 11 H 1.48496 * 109.47267 * 210.00319 * 9 7 5 12 12 H 1.48503 * 109.47348 * 330.00120 * 9 7 5 13 13 C 1.34779 * 120.00253 * 93.47544 * 3 2 1 14 14 O 1.21284 * 119.99931 * 4.96117 * 13 3 2 15 15 C 1.50700 * 119.99881 * 184.96494 * 13 3 2 16 16 H 1.08998 * 109.46935 * 314.65182 * 15 13 3 17 17 C 1.52997 * 109.47327 * 74.65686 * 15 13 3 18 18 O 1.42903 * 109.46777 * 194.65521 * 15 13 3 19 19 C 1.35864 * 117.00024 * 155.92308 * 18 15 13 20 20 C 1.38833 * 119.93819 * 4.91334 * 19 18 15 21 21 C 1.37914 * 120.06199 * 179.76491 * 20 19 18 22 22 C 1.39343 * 119.93502 * 0.51338 * 21 20 19 23 23 C 1.48434 * 120.06262 * 179.76670 * 22 21 20 24 24 N 1.34052 * 126.68213 * 180.02562 * 23 22 21 25 25 N 1.28985 * 107.27017 * 179.97438 * 24 23 22 26 26 N 1.28724 * 108.94879 * 359.97438 * 25 24 23 27 27 H 0.97004 * 125.34252 * 179.97438 * 26 25 24 28 28 N 1.28877 * 109.31875 * 359.77068 * 26 25 24 29 29 C 1.39338 * 119.88147 * 359.74257 * 22 21 20 30 30 C 1.37919 * 119.93928 * 359.97438 * 29 22 21 31 31 H 1.08997 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46838 * 300.00519 * 1 2 3 33 33 H 1.09004 * 109.47064 * 59.99755 * 1 2 3 34 34 H 1.09002 * 109.47130 * 239.99930 * 2 1 3 35 35 H 1.08999 * 109.46747 * 119.99908 * 2 1 3 36 36 H 1.09000 * 109.47292 * 33.81846 * 4 3 2 37 37 H 1.08999 * 109.46918 * 153.81273 * 4 3 2 38 38 H 0.97000 * 119.99692 * 179.97438 * 8 7 5 39 39 H 1.09000 * 109.47131 * 56.56459 * 17 15 13 40 40 H 1.08999 * 109.47328 * 176.56314 * 17 15 13 41 41 H 1.09005 * 109.46762 * 296.56711 * 17 15 13 42 42 H 1.08000 * 119.96798 * 0.02580 * 20 19 18 43 43 H 1.07990 * 120.03392 * 180.25849 * 21 20 19 44 44 H 1.08007 * 120.03644 * 180.02562 * 29 22 21 45 45 H 1.07999 * 119.97200 * 179.97438 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1900 2.0974 -1.2665 5 6 3.5530 1.7950 -1.8338 6 1 4.2240 1.1351 -1.3043 7 6 3.9428 2.3602 -3.0295 8 7 3.1254 3.1635 -3.6746 9 14 5.6325 1.9859 -3.7324 10 1 5.5500 0.7906 -4.6097 11 1 6.1081 3.1489 -4.5239 12 1 6.5828 1.7207 -2.6225 13 6 2.3097 1.9930 1.1650 14 8 2.2541 1.3731 2.2060 15 6 2.7045 3.4474 1.1742 16 1 3.4305 3.6317 0.3824 17 6 1.4651 4.3138 0.9418 18 8 3.2848 3.7754 2.4383 19 6 4.1301 4.8385 2.4717 20 6 4.3156 5.6122 1.3340 21 6 5.1694 6.6948 1.3664 22 6 5.8543 7.0053 2.5395 23 6 6.7779 8.1668 2.5760 24 7 7.4999 8.5830 3.6260 25 7 8.1680 9.6185 3.2450 26 7 7.8942 9.8617 2.0109 27 1 8.2657 10.5883 1.4864 28 7 7.0524 8.9860 1.5804 29 6 5.6704 6.2239 3.6783 30 6 4.8109 5.1459 3.6420 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.4234 1.7769 -1.9720 37 1 2.0984 3.1696 -1.0928 38 1 3.3999 3.5613 -4.5156 39 1 0.7148 4.0850 1.6986 40 1 1.7399 5.3664 1.0092 41 1 1.0578 4.1071 -0.0479 42 1 3.7875 5.3686 0.4239 43 1 5.3101 7.2989 0.4824 44 1 6.1997 6.4625 4.5890 45 1 4.6683 4.5396 4.5242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736535168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:47 Heat of formation + Delta-G solvation = 77.579099 kcal Electronic energy + Delta-G solvation = -29846.754833 eV Core-core repulsion = 25675.043270 eV Total energy + Delta-G solvation = -4171.711563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.54658 -40.43573 -39.09064 -37.38415 -35.30755 -34.42881 -33.49475 -32.90576 -32.16112 -30.97020 -30.02840 -29.45136 -27.18546 -24.95261 -24.82572 -23.98050 -23.21681 -22.87874 -21.96767 -21.18425 -19.37930 -18.54546 -18.10486 -17.24204 -16.83534 -16.51756 -16.25858 -15.82251 -15.32515 -15.09071 -14.59696 -14.44365 -14.38515 -13.93478 -13.47985 -13.41702 -13.22545 -12.93287 -12.76111 -12.70120 -12.35764 -12.30843 -12.05314 -12.00716 -11.72439 -11.59780 -11.47527 -11.41036 -11.27789 -11.13957 -11.02500 -10.83700 -10.65207 -10.54773 -10.39145 -10.18180 -9.82340 -9.11441 -9.00616 -8.65169 -8.01913 -7.84814 -6.29396 -4.37494 0.72192 1.11286 1.37425 2.11491 2.32224 2.95219 3.16773 3.22553 3.24864 3.29939 3.62999 3.82402 4.04054 4.11567 4.26638 4.83121 4.95062 5.02160 5.05972 5.15504 5.21967 5.27529 5.37152 5.38802 5.48654 5.58325 5.67606 5.75251 5.83011 5.86809 5.88852 6.03512 6.17523 6.21970 6.22812 6.29993 6.35354 6.39797 6.44735 6.58433 6.66237 6.68803 7.02461 7.36057 7.54151 7.65695 7.92217 8.03547 8.18021 8.66458 8.85523 9.31624 10.76900 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.003125 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.764133 B = 8957.129189 C =10909.127249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.590 5.590 4 C 0.228 3.772 5 C -0.544 4.544 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.524 3.476 14 O -0.553 6.553 15 C 0.064 3.936 16 H 0.115 0.885 17 C -0.174 4.174 18 O -0.284 6.284 19 C 0.164 3.836 20 C -0.211 4.211 21 C -0.032 4.032 22 C -0.075 4.075 23 C 0.235 3.765 24 N -0.274 5.274 25 N -0.054 5.054 26 N -0.231 5.231 27 H 0.474 0.526 28 N -0.299 5.299 29 C -0.036 4.036 30 C -0.157 4.157 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 10.020 7.664 12.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.321 5.321 4 C 0.108 3.892 5 C -0.583 4.583 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.310 3.690 14 O -0.432 6.432 15 C 0.005 3.995 16 H 0.133 0.867 17 C -0.232 4.232 18 O -0.196 6.196 19 C 0.116 3.884 20 C -0.230 4.230 21 C -0.053 4.053 22 C -0.078 4.078 23 C -0.044 4.044 24 N -0.147 5.147 25 N -0.050 5.050 26 N -0.077 5.077 27 H 0.328 0.672 28 N -0.151 5.151 29 C -0.056 4.056 30 C -0.176 4.176 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.650 10.079 8.455 13.420 hybrid contribution 0.920 0.174 -1.570 1.828 sum 3.570 10.252 6.886 12.856 Atomic orbital electron populations 1.22119 0.96696 1.01426 1.01955 1.21273 0.93420 0.83265 1.02875 1.48115 1.63009 1.13718 1.07302 1.19637 0.97560 0.92597 0.79390 1.21508 1.00456 1.29805 1.06510 0.91945 1.24915 0.97598 0.94611 0.96405 1.69907 1.35956 1.30494 1.16340 0.86537 0.83916 0.78108 0.79273 1.20388 1.20948 1.19662 1.19788 0.77639 0.87579 0.84003 1.90629 1.53875 1.66440 1.32219 1.22367 0.97398 0.94204 0.85509 0.86722 1.22354 0.96979 0.99770 1.04049 1.86169 1.56494 1.44255 1.32663 1.19335 0.88530 0.86405 0.94106 1.21424 1.04389 0.98072 0.99117 1.20935 0.92552 0.95218 0.96570 1.17072 1.00332 0.94309 0.96124 1.23692 0.98349 0.97027 0.85338 1.76061 1.08229 1.05494 1.24936 1.78863 1.18168 1.11502 0.96428 1.47702 1.28330 1.22864 1.08759 0.67219 1.74980 1.10527 1.03271 1.26322 1.20891 0.95277 0.92177 0.97269 1.20350 0.99661 1.00046 0.97546 0.92229 0.92934 0.92395 0.90196 0.90726 0.94282 0.93853 0.92385 0.91400 0.90990 0.89161 0.83714 0.84706 0.84233 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.11 2.04 6.22 -4.04 -0.03 2.01 16 3 N -0.59 -11.86 2.46 -175.05 -0.43 -12.29 16 4 C 0.23 5.00 4.72 -5.19 -0.02 4.98 16 5 C -0.54 -13.46 9.35 -34.44 -0.32 -13.78 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -23.04 13.29 55.43 0.74 -22.30 16 9 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.52 10.80 6.97 -10.98 -0.08 10.73 16 14 O -0.55 -12.68 16.07 -13.92 -0.22 -12.90 16 15 C 0.06 1.16 1.79 -27.88 -0.05 1.11 16 16 H 0.12 2.17 5.40 -51.93 -0.28 1.89 16 17 C -0.17 -2.64 8.82 37.16 0.33 -2.31 16 18 O -0.28 -5.11 9.37 -38.78 -0.36 -5.48 16 19 C 0.16 2.55 6.58 -39.14 -0.26 2.29 16 20 C -0.21 -3.10 8.17 -39.48 -0.32 -3.42 16 21 C -0.03 -0.44 9.69 -39.29 -0.38 -0.82 16 22 C -0.07 -0.99 5.88 -104.88 -0.62 -1.60 16 23 C 0.24 3.06 7.93 -156.30 -1.24 1.82 16 24 N -0.27 -3.58 12.23 32.15 0.39 -3.19 16 25 N -0.05 -0.60 13.47 60.35 0.81 0.21 16 26 N -0.23 -1.99 7.90 60.35 0.48 -1.51 16 27 H 0.47 1.72 8.96 -340.36 -3.05 -1.33 16 28 N -0.30 -3.46 12.08 32.17 0.39 -3.07 16 29 C -0.04 -0.45 9.70 -39.29 -0.38 -0.83 16 30 C -0.16 -2.13 9.97 -39.48 -0.39 -2.52 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 35 H 0.07 1.35 7.26 -51.93 -0.38 0.97 16 36 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.04 0.94 4.47 -51.93 -0.23 0.71 16 38 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.96 6.88 -51.93 -0.36 0.60 16 41 H 0.09 1.39 6.20 -51.93 -0.32 1.07 16 42 H 0.15 2.14 5.44 -52.49 -0.29 1.85 16 43 H 0.14 1.65 7.88 -52.49 -0.41 1.24 16 44 H 0.14 1.50 7.88 -52.48 -0.41 1.09 16 45 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -30.83 382.52 -9.18 -40.00 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.23 Total: 2.70 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.48 Total: -2.80 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 2.38 Total: -42.15 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.59 Total: -18.38 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.83 -9.18 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736535168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.584 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds