Wall clock time and date at job start Wed Apr 1 2020 03:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47276 * 2 1 4 4 C 1.46505 * 119.99811 * 273.47741 * 3 2 1 5 5 C 1.50700 * 109.46796 * 273.81499 * 4 3 2 6 6 H 1.07992 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99540 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00345 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47073 * 90.00129 * 9 7 5 11 11 H 1.48496 * 109.47267 * 210.00319 * 9 7 5 12 12 H 1.48503 * 109.47348 * 330.00120 * 9 7 5 13 13 C 1.34779 * 120.00253 * 93.47544 * 3 2 1 14 14 O 1.21284 * 119.99931 * 4.96117 * 13 3 2 15 15 C 1.50700 * 119.99881 * 184.96494 * 13 3 2 16 16 H 1.08998 * 109.46935 * 314.65182 * 15 13 3 17 17 C 1.52997 * 109.47327 * 74.65686 * 15 13 3 18 18 O 1.42903 * 109.46777 * 194.65521 * 15 13 3 19 19 C 1.35864 * 117.00024 * 155.92308 * 18 15 13 20 20 C 1.38833 * 119.93819 * 4.91334 * 19 18 15 21 21 C 1.37914 * 120.06199 * 179.76491 * 20 19 18 22 22 C 1.39343 * 119.93502 * 0.51338 * 21 20 19 23 23 C 1.48434 * 120.06262 * 179.76670 * 22 21 20 24 24 N 1.34052 * 126.68213 * 180.02562 * 23 22 21 25 25 N 1.28985 * 107.27017 * 179.97438 * 24 23 22 26 26 N 1.28724 * 108.94879 * 359.97438 * 25 24 23 27 27 H 0.97004 * 125.34252 * 179.97438 * 26 25 24 28 28 N 1.28877 * 109.31875 * 359.77068 * 26 25 24 29 29 C 1.39338 * 119.88147 * 359.74257 * 22 21 20 30 30 C 1.37919 * 119.93928 * 359.97438 * 29 22 21 31 31 H 1.08997 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46838 * 300.00519 * 1 2 3 33 33 H 1.09004 * 109.47064 * 59.99755 * 1 2 3 34 34 H 1.09002 * 109.47130 * 239.99930 * 2 1 3 35 35 H 1.08999 * 109.46747 * 119.99908 * 2 1 3 36 36 H 1.09000 * 109.47292 * 33.81846 * 4 3 2 37 37 H 1.08999 * 109.46918 * 153.81273 * 4 3 2 38 38 H 0.97000 * 119.99692 * 179.97438 * 8 7 5 39 39 H 1.09000 * 109.47131 * 56.56459 * 17 15 13 40 40 H 1.08999 * 109.47328 * 176.56314 * 17 15 13 41 41 H 1.09005 * 109.46762 * 296.56711 * 17 15 13 42 42 H 1.08000 * 119.96798 * 0.02580 * 20 19 18 43 43 H 1.07990 * 120.03392 * 180.25849 * 21 20 19 44 44 H 1.08007 * 120.03644 * 180.02562 * 29 22 21 45 45 H 1.07999 * 119.97200 * 179.97438 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1900 2.0974 -1.2665 5 6 3.5530 1.7950 -1.8338 6 1 4.2240 1.1351 -1.3043 7 6 3.9428 2.3602 -3.0295 8 7 3.1254 3.1635 -3.6746 9 14 5.6325 1.9859 -3.7324 10 1 5.5500 0.7906 -4.6097 11 1 6.1081 3.1489 -4.5239 12 1 6.5828 1.7207 -2.6225 13 6 2.3097 1.9930 1.1650 14 8 2.2541 1.3731 2.2060 15 6 2.7045 3.4474 1.1742 16 1 3.4305 3.6317 0.3824 17 6 1.4651 4.3138 0.9418 18 8 3.2848 3.7754 2.4383 19 6 4.1301 4.8385 2.4717 20 6 4.3156 5.6122 1.3340 21 6 5.1694 6.6948 1.3664 22 6 5.8543 7.0053 2.5395 23 6 6.7779 8.1668 2.5760 24 7 7.4999 8.5830 3.6260 25 7 8.1680 9.6185 3.2450 26 7 7.8942 9.8617 2.0109 27 1 8.2657 10.5883 1.4864 28 7 7.0524 8.9860 1.5804 29 6 5.6704 6.2239 3.6783 30 6 4.8109 5.1459 3.6420 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.4234 1.7769 -1.9720 37 1 2.0984 3.1696 -1.0928 38 1 3.3999 3.5613 -4.5156 39 1 0.7148 4.0850 1.6986 40 1 1.7399 5.3664 1.0092 41 1 1.0578 4.1071 -0.0479 42 1 3.7875 5.3686 0.4239 43 1 5.3101 7.2989 0.4824 44 1 6.1997 6.4625 4.5890 45 1 4.6683 4.5396 4.5242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736535168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:45 Heat of formation + Delta-G solvation = 60.125868 kcal Electronic energy + Delta-G solvation = -29847.511662 eV Core-core repulsion = 25675.043270 eV Total energy + Delta-G solvation = -4172.468392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -45.43294 -41.76283 -40.50994 -38.61187 -36.99164 -35.33298 -34.75077 -34.44857 -33.50940 -32.09895 -31.35426 -30.58577 -28.99062 -26.18462 -25.76869 -25.13595 -24.97777 -24.06853 -23.15398 -22.31515 -20.34376 -19.95320 -19.38883 -18.66145 -18.11701 -17.89610 -17.62512 -17.19529 -16.72147 -16.54878 -16.19077 -15.80071 -15.60320 -14.97540 -14.79378 -14.61240 -14.51474 -14.38185 -14.10074 -13.91930 -13.69200 -13.55291 -13.48130 -13.22701 -13.08429 -12.98213 -12.87203 -12.68302 -12.55862 -12.44789 -12.30946 -12.20358 -12.14316 -11.83686 -11.76185 -11.66124 -11.48919 -10.76121 -10.53112 -10.07545 -9.53364 -9.14571 -8.22054 -6.35681 -0.27348 0.19453 0.31437 1.29212 1.39721 1.42845 1.44454 1.48392 1.54792 1.72277 2.37836 2.61269 2.70975 2.75371 3.08739 3.17459 3.46352 3.76489 3.89448 3.92533 3.99889 4.16075 4.21359 4.23984 4.40794 4.41901 4.45155 4.55055 4.58501 4.65263 4.67311 4.80485 4.92205 5.00103 5.03887 5.07218 5.17570 5.22290 5.29654 5.33656 5.39264 5.58974 5.63365 5.66171 5.80664 6.03682 6.27830 6.49263 6.76487 7.13774 7.19146 7.37275 8.82999 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.003125 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.764133 B = 8957.129189 C =10909.127249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.590 5.590 4 C 0.241 3.759 5 C -0.555 4.555 6 H 0.048 0.952 7 C 0.033 3.967 8 N -0.910 5.910 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.517 3.483 14 O -0.580 6.580 15 C 0.071 3.929 16 H 0.103 0.897 17 C -0.165 4.165 18 O -0.303 6.303 19 C 0.139 3.861 20 C -0.215 4.215 21 C -0.034 4.034 22 C -0.072 4.072 23 C 0.221 3.779 24 N -0.293 5.293 25 N -0.056 5.056 26 N -0.202 5.202 27 H 0.494 0.506 28 N -0.302 5.302 29 C -0.029 4.029 30 C -0.155 4.155 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.269 0.731 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.159 0.841 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 11.197 7.584 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.321 5.321 4 C 0.120 3.880 5 C -0.593 4.593 6 H 0.066 0.934 7 C -0.169 4.169 8 N -0.549 5.549 9 Si 0.772 3.228 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.304 3.696 14 O -0.462 6.462 15 C 0.011 3.989 16 H 0.120 0.880 17 C -0.222 4.222 18 O -0.215 6.215 19 C 0.092 3.908 20 C -0.234 4.234 21 C -0.054 4.054 22 C -0.076 4.076 23 C -0.058 4.058 24 N -0.165 5.165 25 N -0.051 5.051 26 N -0.052 5.052 27 H 0.353 0.647 28 N -0.155 5.155 29 C -0.049 4.049 30 C -0.174 4.174 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.176 0.824 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.376 11.271 8.364 14.436 hybrid contribution 0.796 -0.106 -1.537 1.735 sum 4.173 11.165 6.827 13.736 Atomic orbital electron populations 1.22020 0.94252 1.03220 1.01542 1.21466 0.95459 0.82111 1.02531 1.48163 1.62811 1.14480 1.06674 1.19379 0.95920 0.92958 0.79703 1.21661 1.01371 1.29547 1.06726 0.93406 1.25469 1.00215 0.94523 0.96661 1.69965 1.37148 1.31065 1.16685 0.85741 0.80554 0.78105 0.78438 1.20010 1.20310 1.20189 1.20272 0.77076 0.88648 0.83575 1.90599 1.55230 1.67353 1.32977 1.22241 0.98161 0.92953 0.85507 0.87984 1.22293 0.95760 1.00307 1.03834 1.86126 1.57501 1.45581 1.32299 1.19574 0.89408 0.86490 0.95287 1.21398 1.04841 0.98486 0.98683 1.21019 0.92261 0.94919 0.97194 1.17211 0.99913 0.94365 0.96127 1.23639 0.98934 0.97460 0.85811 1.76045 1.08810 1.06265 1.25418 1.78813 1.18019 1.11129 0.97120 1.47760 1.26803 1.22415 1.08260 0.64734 1.74940 1.10887 1.03471 1.26183 1.21072 0.94674 0.91380 0.97809 1.20541 0.99208 1.00325 0.97317 0.89371 0.93545 0.92462 0.90229 0.91303 0.95286 0.93413 0.92143 0.90976 0.89125 0.89490 0.84299 0.83669 0.82368 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 10.24 71.98 0.74 -3.70 16 2 C 0.11 3.80 6.22 86.38 0.54 4.34 16 3 N -0.59 -24.07 2.46 -826.13 -2.03 -26.10 16 4 C 0.24 10.69 4.72 85.63 0.40 11.09 16 5 C -0.55 -27.64 9.35 25.60 0.24 -27.40 16 6 H 0.05 2.49 7.81 -2.91 -0.02 2.46 16 7 C 0.03 1.64 5.46 84.65 0.46 2.11 16 8 N -0.91 -46.83 13.29 21.45 0.28 -46.55 16 9 Si 0.95 40.46 29.54 68.60 2.03 42.49 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.52 21.70 6.97 87.66 0.61 22.31 16 14 O -0.58 -27.13 16.07 15.58 0.25 -26.88 16 15 C 0.07 2.59 1.79 29.85 0.05 2.64 16 16 H 0.10 3.97 5.40 -2.39 -0.01 3.96 16 17 C -0.16 -4.97 8.82 71.98 0.63 -4.34 16 18 O -0.30 -11.04 9.37 -73.41 -0.69 -11.72 16 19 C 0.14 4.33 6.58 22.55 0.15 4.48 16 20 C -0.22 -6.28 8.17 22.34 0.18 -6.10 16 21 C -0.03 -0.88 9.69 22.46 0.22 -0.66 16 22 C -0.07 -1.83 5.88 -20.03 -0.12 -1.95 16 23 C 0.22 5.38 7.93 137.37 1.09 6.47 16 24 N -0.29 -7.14 12.23 -52.19 -0.64 -7.78 16 25 N -0.06 -1.12 13.47 37.02 0.50 -0.62 16 26 N -0.20 -2.99 7.90 37.02 0.29 -2.70 16 27 H 0.49 2.25 8.96 -347.53 -3.12 -0.87 16 28 N -0.30 -6.36 12.08 -52.14 -0.63 -6.99 16 29 C -0.03 -0.70 9.70 22.46 0.22 -0.48 16 30 C -0.16 -4.09 9.97 22.34 0.22 -3.87 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.08 2.81 8.10 -2.39 -0.02 2.79 16 35 H 0.07 2.53 7.26 -2.39 -0.02 2.51 16 36 H 0.03 1.35 8.10 -2.39 -0.02 1.33 16 37 H 0.05 2.09 4.47 -2.39 -0.01 2.08 16 38 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.09 2.37 6.88 -2.39 -0.02 2.35 16 41 H 0.09 2.66 6.20 -2.38 -0.01 2.65 16 42 H 0.14 4.15 5.44 -2.91 -0.02 4.14 16 43 H 0.15 3.40 7.88 -2.92 -0.02 3.37 16 44 H 0.16 3.12 7.88 -2.91 -0.02 3.10 16 45 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -64.86 382.52 2.95 -61.91 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -2.06 Total: 19.98 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.64 Total: 4.95 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -2.22 Total: -90.73 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.44 Total: -38.60 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -64.86 2.95 -61.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736535168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.036 kcal (2) G-P(sol) polarization free energy of solvation -64.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds