Wall clock time and date at job start Wed Apr 1 2020 03:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35962 * 117.00117 * 2 1 4 4 C 1.38719 * 119.91158 * 359.97438 * 3 2 1 5 5 C 1.37906 * 120.16151 * 179.97438 * 4 3 2 6 6 C 1.39729 * 119.98530 * 0.02562 * 5 4 3 7 7 C 1.47419 * 120.08256 * 179.97438 * 6 5 4 8 8 N 1.29852 * 120.00632 * 0.02562 * 7 6 5 9 9 N 1.40100 * 120.00726 * 179.97438 * 8 7 6 10 10 C 1.39080 * 120.00238 * 179.97438 * 9 8 7 11 11 C 1.35961 * 126.69609 * 359.97438 * 10 9 8 12 12 N 1.33250 * 108.85193 * 180.22364 * 11 10 9 13 13 N 1.28727 * 110.02706 * 359.60900 * 12 11 10 14 14 N 1.36368 * 126.69546 * 179.97438 * 10 9 8 15 15 C 1.46495 * 126.84878 * 0.02783 * 14 10 9 16 16 C 1.39724 * 119.83203 * 0.25395 * 6 5 4 17 17 C 1.38246 * 119.83517 * 359.46760 * 16 6 5 18 18 O 1.35995 * 119.99501 * 180.25022 * 17 16 6 19 19 C 1.42900 * 116.99773 * 0.30732 * 18 17 16 20 20 C 1.53004 * 109.46843 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46996 * 179.97438 * 20 19 18 22 22 H 1.08004 * 120.00219 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00206 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99928 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00396 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46667 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47367 * 120.00241 * 25 23 21 28 28 H 1.48494 * 109.47382 * 240.00721 * 25 23 21 29 29 H 1.09003 * 109.47069 * 60.00642 * 1 2 3 30 30 H 1.09006 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47512 * 300.00223 * 1 2 3 32 32 H 1.08002 * 119.91804 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.01091 * 179.97438 * 5 4 3 34 34 H 1.08010 * 119.99930 * 179.97438 * 7 6 5 35 35 H 0.97001 * 119.99412 * 359.97438 * 9 8 7 36 36 H 1.08002 * 125.56966 * 359.95155 * 11 10 9 37 37 H 1.09004 * 109.47350 * 89.99722 * 15 14 10 38 38 H 1.08999 * 109.47378 * 209.99709 * 15 14 10 39 39 H 1.08995 * 109.47288 * 329.99842 * 15 14 10 40 40 H 1.07996 * 120.08398 * 179.72330 * 16 6 5 41 41 H 1.09000 * 109.46896 * 299.99200 * 19 18 17 42 42 H 1.08992 * 109.47489 * 59.99396 * 19 18 17 43 43 H 1.09001 * 109.47198 * 299.99097 * 20 19 18 44 44 H 1.08992 * 109.47580 * 59.99441 * 20 19 18 45 45 H 0.96996 * 120.00023 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2890 2.3737 -0.0005 5 6 1.9097 3.6051 0.0000 6 6 3.3048 3.6839 0.0005 7 6 3.9706 4.9992 0.0005 8 7 3.2606 6.0865 0.0005 9 7 3.8933 7.3364 0.0011 10 6 3.1328 8.5009 0.0005 11 6 1.7758 8.5850 -0.0010 12 7 1.4240 9.8702 -0.0060 13 7 2.4742 10.6147 0.0006 14 7 3.6027 9.7811 0.0014 15 6 5.0059 10.2019 0.0026 16 6 4.0671 2.5130 -0.0048 17 6 3.4374 1.2823 0.0005 18 8 4.1763 0.1406 0.0004 19 6 5.5977 0.2877 0.0015 20 6 6.2535 -1.0947 0.0006 21 6 7.7525 -0.9395 0.0012 22 1 8.1934 0.0464 0.0016 23 6 8.5611 -2.0562 0.0011 24 7 8.0243 -3.2569 0.0000 25 14 10.4192 -1.8640 0.0010 26 1 10.7674 -0.4203 0.0017 27 1 10.9837 -2.5095 1.2134 28 1 10.9836 -2.5091 -1.2116 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2106 2.3140 -0.0005 33 1 1.3178 4.5084 -0.0008 34 1 5.0491 5.0586 0.0014 35 1 4.8619 7.3897 0.0018 36 1 1.0944 7.7470 -0.0028 37 1 5.3547 10.3067 -1.0248 38 1 5.0979 11.1585 0.5169 39 1 5.6092 9.4536 0.5165 40 1 5.1456 2.5692 -0.0090 41 1 5.9068 0.8366 -0.8880 42 1 5.9056 0.8358 0.8919 43 1 5.9445 -1.6440 0.8900 44 1 5.9455 -1.6424 -0.8899 45 1 8.5932 -4.0425 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814981302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:08 Heat of formation + Delta-G solvation = 97.732261 kcal Electronic energy + Delta-G solvation = -28068.697729 eV Core-core repulsion = 23897.860073 eV Total energy + Delta-G solvation = -4170.837656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15100 -40.44991 -38.33382 -38.05177 -36.69922 -34.84495 -33.47496 -33.04340 -30.76363 -30.53723 -29.47544 -28.62052 -27.95241 -27.11332 -25.14640 -24.01622 -22.56931 -22.45730 -21.67062 -20.62438 -20.56008 -18.60293 -18.19403 -17.56968 -17.05648 -16.46435 -16.32288 -16.09176 -15.95214 -15.79417 -15.08411 -14.75702 -14.66922 -14.60684 -14.38698 -14.09877 -14.00375 -13.60367 -13.39033 -12.83738 -12.79811 -12.38401 -12.24462 -12.08997 -11.91099 -11.72405 -11.46141 -11.34166 -11.24266 -10.97895 -10.92929 -10.67054 -10.64555 -10.62796 -9.98549 -9.86977 -9.71135 -9.32531 -8.81735 -8.48964 -8.20495 -7.51221 -6.13843 -4.18720 0.52199 1.22146 1.30066 1.40013 2.18049 2.39301 2.53475 3.22734 3.27031 3.29713 3.32489 3.67638 3.77681 3.98271 4.18844 4.36099 4.41973 4.53313 4.62213 4.78786 4.79566 4.92466 4.98064 5.08730 5.10321 5.14392 5.22604 5.27053 5.33094 5.44690 5.57933 5.59467 5.67465 5.94449 5.96818 6.05564 6.14392 6.20391 6.37427 6.57170 6.60879 6.65634 7.19383 7.49773 7.54908 7.61742 7.77282 8.01313 8.05517 8.19570 8.87147 9.45609 10.97646 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.002148 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.254210 B =13031.874697 C =16039.076312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.299 6.299 3 C 0.113 3.887 4 C -0.183 4.183 5 C -0.082 4.082 6 C -0.061 4.061 7 C 0.130 3.870 8 N -0.232 5.232 9 N -0.564 5.564 10 C 0.346 3.654 11 C -0.107 4.107 12 N -0.217 5.217 13 N -0.090 5.090 14 N -0.402 5.402 15 C 0.093 3.907 16 C -0.148 4.148 17 C 0.116 3.884 18 O -0.302 6.302 19 C 0.063 3.937 20 C 0.025 3.975 21 C -0.526 4.526 22 H 0.058 0.942 23 C 0.060 3.940 24 N -0.888 5.888 25 Si 0.898 3.102 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.389 0.611 36 H 0.188 0.812 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.143 0.857 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 19.704 0.050 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.212 6.212 3 C 0.066 3.934 4 C -0.202 4.202 5 C -0.102 4.102 6 C -0.064 4.064 7 C -0.080 4.080 8 N -0.038 5.038 9 N -0.290 5.290 10 C 0.115 3.885 11 C -0.270 4.270 12 N -0.085 5.085 13 N -0.069 5.069 14 N -0.197 5.197 15 C -0.049 4.049 16 C -0.169 4.169 17 C 0.068 3.932 18 O -0.215 6.215 19 C -0.011 4.011 20 C -0.012 4.012 21 C -0.564 4.564 22 H 0.076 0.924 23 C -0.142 4.142 24 N -0.526 5.526 25 Si 0.725 3.275 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.228 0.772 36 H 0.205 0.795 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.161 0.839 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.075 21.098 0.046 24.309 hybrid contribution 3.025 -0.891 0.001 3.153 sum -9.050 20.208 0.047 22.142 Atomic orbital electron populations 1.23086 0.78795 1.04044 1.01053 1.86259 1.20797 1.25848 1.88250 1.18571 0.89495 0.85231 1.00080 1.20964 0.99959 0.91268 1.07982 1.20956 0.93196 0.97317 0.98755 1.17800 0.92844 0.88992 1.06778 1.24311 0.97626 0.90435 0.95633 1.74695 1.25143 0.89203 1.14746 1.44252 1.05865 0.99516 1.79416 1.18067 0.91698 0.79526 0.99238 1.22483 0.91185 0.95024 1.18274 1.74070 1.21609 1.02913 1.09935 1.82072 0.84834 1.12022 1.27929 1.50462 1.09272 1.02864 1.57120 1.21973 0.75663 1.03186 1.04108 1.21165 1.00657 0.90041 1.05053 1.18224 0.88528 0.86958 0.99472 1.86318 1.21124 1.26772 1.87293 1.23367 0.74795 1.03426 0.99511 1.19121 0.94195 0.88868 0.99034 1.20988 0.90314 0.92878 1.52245 0.92365 1.24995 0.99098 0.95180 0.94964 1.69984 1.35367 0.97577 1.49631 0.86448 0.85046 0.78214 0.77744 1.19713 1.20850 1.20845 0.92731 0.88204 0.92738 0.84614 0.84727 0.86082 0.77167 0.79508 0.89868 0.88021 0.89820 0.83909 0.93108 0.93100 0.95303 0.95304 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.39 10.27 -34.32 -0.35 -4.74 16 3 C 0.11 1.63 6.70 -39.01 -0.26 1.37 16 4 C -0.18 -2.03 9.02 -39.53 -0.36 -2.38 16 5 C -0.08 -0.87 9.57 -39.15 -0.37 -1.24 16 6 C -0.06 -0.68 5.87 -105.05 -0.62 -1.29 16 7 C 0.13 1.17 10.75 -14.65 -0.16 1.01 16 8 N -0.23 -2.19 10.21 32.16 0.33 -1.87 16 9 N -0.56 -4.62 6.45 31.25 0.20 -4.42 16 10 C 0.35 3.43 7.92 -152.59 -1.21 2.22 16 11 C -0.11 -1.22 11.45 -17.75 -0.20 -1.42 16 12 N -0.22 -2.84 12.31 30.26 0.37 -2.47 16 13 N -0.09 -1.11 13.80 60.35 0.83 -0.28 16 14 N -0.40 -3.72 4.09 -67.04 -0.27 -3.99 16 15 C 0.09 0.39 11.39 59.84 0.68 1.08 16 16 C -0.15 -1.93 8.77 -39.02 -0.34 -2.27 16 17 C 0.12 1.85 6.69 -39.18 -0.26 1.59 16 18 O -0.30 -5.95 9.91 -34.42 -0.34 -6.29 16 19 C 0.06 1.26 4.68 37.16 0.17 1.43 16 20 C 0.02 0.63 5.34 -27.88 -0.15 0.48 16 21 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 22 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 24 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 25 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 32 H 0.14 1.13 6.27 -52.49 -0.33 0.80 16 33 H 0.13 1.24 7.54 -52.49 -0.40 0.85 16 34 H 0.12 0.78 8.03 -52.48 -0.42 0.36 16 35 H 0.39 2.12 8.11 -182.60 -1.48 0.64 16 36 H 0.19 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.18 7.65 -51.93 -0.40 -0.22 16 40 H 0.14 1.71 6.29 -52.49 -0.33 1.38 16 41 H 0.05 0.94 7.65 -51.93 -0.40 0.54 16 42 H 0.05 0.94 7.67 -51.93 -0.40 0.54 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -34.32 393.06 -7.11 -41.43 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -7.02 Total: -2.69 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.50 Total: -11.09 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 2.20 Total: -38.16 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.69 Total: -11.04 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.32 -7.11 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814981302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.160 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds