Wall clock time and date at job start Wed Apr 1 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35992 * 117.00166 * 2 1 4 4 C 1.40154 * 125.83795 * 180.31853 * 3 2 1 5 5 C 1.36069 * 107.81580 * 180.13008 * 4 3 2 6 6 N 1.39482 * 126.21328 * 179.84760 * 5 4 3 7 7 C 1.34773 * 120.00393 * 359.69198 * 6 5 4 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00097 * 179.72700 * 7 6 5 10 10 C 1.46496 * 119.99875 * 0.26801 * 9 7 6 11 11 C 1.50703 * 109.47067 * 90.00619 * 10 9 7 12 12 H 1.08005 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00286 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00272 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47148 * 89.99653 * 15 13 11 17 17 H 1.48496 * 109.47010 * 210.00013 * 15 13 11 18 18 H 1.48501 * 109.46644 * 329.99739 * 15 13 11 19 19 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 20 20 C 1.50695 * 109.47163 * 89.99960 * 19 9 7 21 21 C 1.38226 * 119.62289 * 95.00028 * 20 19 9 22 22 C 1.38627 * 119.16081 * 179.97438 * 21 20 19 23 23 C 1.38674 * 118.42421 * 359.97438 * 22 21 20 24 24 C 1.38185 * 119.15917 * 359.97438 * 23 22 21 25 25 N 1.31858 * 119.61703 * 274.72305 * 20 19 9 26 26 N 1.35802 * 107.56627 * 359.58450 * 5 4 3 27 27 C 1.46500 * 126.04363 * 180.26375 * 26 5 4 28 28 N 1.31107 * 125.83205 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47072 * 299.99759 * 1 2 3 30 30 H 1.09000 * 109.47420 * 59.99593 * 1 2 3 31 31 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 32 32 H 1.07991 * 126.09383 * 359.97438 * 4 3 2 33 33 H 0.97000 * 119.99495 * 179.68718 * 6 5 4 34 34 H 1.08997 * 109.47346 * 210.00204 * 10 9 7 35 35 H 1.09004 * 109.47612 * 330.00302 * 10 9 7 36 36 H 0.97009 * 119.99873 * 179.97438 * 14 13 11 37 37 H 1.08994 * 109.46719 * 209.99532 * 19 9 7 38 38 H 1.08996 * 109.47068 * 329.99428 * 19 9 7 39 39 H 1.07998 * 120.41761 * 359.95341 * 21 20 19 40 40 H 1.08002 * 120.78778 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.41719 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.61261 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47109 * 90.00375 * 27 26 5 44 44 H 1.09000 * 109.46754 * 209.99626 * 27 26 5 45 45 H 1.09001 * 109.47229 * 330.00042 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4313 1.4270 -0.0063 5 6 3.6437 2.7710 -0.0010 6 7 4.8839 3.4093 -0.0016 7 6 6.0172 2.6799 -0.0015 8 8 5.9586 1.4654 -0.0005 9 7 7.2155 3.2967 -0.0076 10 6 7.2861 4.7600 -0.0083 11 6 7.3175 5.2621 1.4122 12 1 7.2874 4.5613 2.2335 13 6 7.3836 6.6161 1.6635 14 7 7.4198 7.4695 0.6635 15 14 7.4218 7.2386 3.4244 16 1 8.8303 7.3364 3.8844 17 1 6.7855 8.5787 3.4896 18 1 6.6798 6.2952 4.2990 19 6 8.4474 2.5038 -0.0136 20 6 8.8627 2.2317 -1.4364 21 6 9.7821 3.0615 -2.0504 22 6 10.1577 2.8020 -3.3593 23 6 9.5925 1.7124 -4.0046 24 6 8.6805 0.9267 -3.3260 25 7 8.3491 1.2016 -2.0795 26 7 2.4288 3.3779 -0.0011 27 6 2.1871 4.8228 -0.0017 28 7 1.4478 2.3781 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 4.1939 0.6624 -0.0116 33 1 4.9306 4.3781 -0.0021 34 1 8.1900 5.0799 -0.5267 35 1 6.4122 5.1658 -0.5179 36 1 7.4659 8.4222 0.8403 37 1 9.2371 3.0557 0.4961 38 1 8.2739 1.5590 0.5013 39 1 10.2021 3.9015 -1.5172 40 1 10.8741 3.4330 -3.8643 41 1 9.8623 1.4804 -5.0242 42 1 8.2355 0.0767 -3.8217 43 1 2.1269 5.1807 -1.0295 44 1 1.2494 5.0345 0.5121 45 1 3.0050 5.3283 0.5117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881248080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:35 Heat of formation + Delta-G solvation = 74.695372 kcal Electronic energy + Delta-G solvation = -30355.664902 eV Core-core repulsion = 26183.828291 eV Total energy + Delta-G solvation = -4171.836610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18166 -40.08604 -39.25677 -37.93623 -35.39665 -34.32069 -32.92395 -32.38629 -32.20172 -31.39344 -28.70566 -27.78618 -27.64056 -25.99643 -25.59843 -23.44146 -23.02779 -22.30213 -21.20558 -20.51600 -19.02449 -18.37505 -16.99923 -16.82168 -16.32173 -16.00317 -15.94870 -15.83744 -15.70464 -15.34896 -14.98040 -14.83243 -14.57675 -14.28809 -13.92523 -13.56977 -13.25130 -12.99567 -12.94340 -12.85282 -12.51301 -12.42698 -12.27687 -11.86726 -11.79292 -11.62223 -11.38862 -11.17351 -11.08661 -10.88490 -10.36839 -10.31414 -10.16703 -9.95199 -9.66320 -9.33179 -9.13584 -8.82729 -8.72413 -8.16390 -8.02959 -7.56952 -6.35056 -4.44489 1.26893 1.50973 2.15743 2.35570 3.03602 3.12843 3.21073 3.21526 3.25704 3.67425 3.87501 4.07863 4.19545 4.55512 4.60778 4.78152 4.96996 4.98028 5.02212 5.24140 5.25087 5.32548 5.34100 5.35029 5.49606 5.58950 5.66620 5.73462 5.76761 5.87325 5.96531 6.05638 6.18419 6.32910 6.36180 6.42946 6.50006 6.80988 6.90641 6.91630 7.14316 7.42622 7.52570 7.60266 7.63937 7.84640 8.04779 8.30785 8.40691 8.67321 9.10944 9.26462 10.70668 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.006779 B = 0.004636 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4129.439817 B = 6038.613178 C = 9353.915698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.290 6.290 3 C 0.272 3.728 4 C -0.291 4.291 5 C 0.368 3.632 6 N -0.656 5.656 7 C 0.716 3.284 8 O -0.564 6.564 9 N -0.601 5.601 10 C 0.238 3.762 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.889 5.889 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.186 3.814 20 C 0.116 3.884 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.181 4.181 24 C 0.093 3.907 25 N -0.455 5.455 26 N -0.388 5.388 27 C 0.105 3.895 28 N -0.354 5.354 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.181 0.819 33 H 0.418 0.582 34 H 0.043 0.957 35 H 0.027 0.973 36 H 0.267 0.733 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -6.032 -6.154 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.194 6.194 3 C 0.068 3.932 4 C -0.323 4.323 5 C 0.147 3.853 6 N -0.307 5.307 7 C 0.418 3.582 8 O -0.440 6.440 9 N -0.335 5.335 10 C 0.118 3.882 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.062 3.938 20 C -0.023 4.023 21 C -0.176 4.176 22 C -0.108 4.108 23 C -0.201 4.201 24 C -0.065 4.065 25 N -0.164 5.164 26 N -0.181 5.181 27 C -0.037 4.037 28 N -0.194 5.194 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.198 0.802 33 H 0.258 0.742 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.086 -6.805 -5.745 9.798 hybrid contribution 1.180 1.671 0.314 2.070 sum -2.906 -5.133 -5.432 8.019 Atomic orbital electron populations 1.22887 0.78420 1.02952 1.01834 1.86297 1.21447 1.21965 1.89683 1.20292 0.91577 0.84772 0.96582 1.20813 0.93502 0.94255 1.23715 1.17619 0.79823 0.89901 0.98005 1.42213 1.01550 1.11051 1.75934 1.15470 0.80111 0.84698 0.77956 1.90836 1.85244 1.11220 1.56670 1.47238 1.02314 1.08778 1.75191 1.19404 0.98470 0.72679 0.97601 1.21550 1.52547 0.92032 0.92213 0.91651 1.24945 0.94455 0.96604 0.97602 1.69923 1.49120 1.02775 1.30900 0.86503 0.78574 0.78204 0.84320 1.20333 1.21049 1.19691 1.20057 0.86591 0.97423 0.89772 1.21924 0.92190 0.90360 0.97818 1.22119 0.99081 1.00581 0.95825 1.21542 0.98287 0.96394 0.94560 1.22103 0.99645 0.97161 1.01204 1.22775 0.94445 0.98536 0.90738 1.67656 1.22680 1.17297 1.08740 1.47885 1.00975 1.05744 1.63460 1.21801 1.04166 0.74535 1.03178 1.77329 1.11492 0.94694 1.35870 0.92780 0.92805 0.88669 0.80200 0.74238 0.93941 0.95510 0.92347 0.88333 0.88679 0.84466 0.85171 0.85360 0.83247 0.91044 0.89216 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.69 101.05 1.08 1.49 16 2 O -0.29 -4.78 10.58 -19.72 -0.21 -4.99 16 3 C 0.27 5.05 7.88 -17.14 -0.14 4.91 16 4 C -0.29 -5.85 9.67 -39.64 -0.38 -6.23 16 5 C 0.37 7.07 7.68 -152.68 -1.17 5.89 16 6 N -0.66 -12.68 5.28 -15.73 -0.08 -12.76 16 7 C 0.72 15.02 8.24 -86.92 -0.72 14.30 16 8 O -0.56 -12.72 13.05 5.28 0.07 -12.65 16 9 N -0.60 -11.99 2.44 -182.19 -0.44 -12.43 16 10 C 0.24 5.13 4.93 -5.19 -0.03 5.10 16 11 C -0.54 -12.90 9.39 -34.44 -0.32 -13.23 16 12 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 13 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -22.42 13.29 55.43 0.74 -21.68 16 15 Si 0.90 19.25 29.54 -169.99 -5.02 14.23 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.19 3.31 5.71 -5.19 -0.03 3.28 16 20 C 0.12 1.96 6.36 -82.59 -0.53 1.44 16 21 C -0.16 -2.27 9.72 -39.44 -0.38 -2.65 16 22 C -0.08 -1.02 10.18 -39.28 -0.40 -1.42 16 23 C -0.18 -2.18 10.11 -39.44 -0.40 -2.58 16 24 C 0.09 1.32 11.18 -17.55 -0.20 1.12 16 25 N -0.45 -7.99 10.27 -9.48 -0.10 -8.09 16 26 N -0.39 -6.64 4.04 -67.05 -0.27 -6.91 16 27 C 0.10 1.34 11.29 59.85 0.68 2.01 16 28 N -0.35 -6.33 11.96 30.53 0.37 -5.96 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.18 3.90 5.82 -52.49 -0.31 3.59 16 33 H 0.42 7.77 5.71 -40.82 -0.23 7.53 16 34 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.03 0.60 6.36 -51.93 -0.33 0.27 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.10 1.59 7.97 -51.93 -0.41 1.18 16 38 H 0.09 1.75 7.42 -51.93 -0.39 1.36 16 39 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.09 1.09 7.51 -51.93 -0.39 0.70 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -30.72 388.18 -7.96 -38.68 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.83 Total: 11.73 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: -3.03 Total: 15.00 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: 0.21 Total: -67.84 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.14 Total: -17.64 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.72 -7.96 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881248080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.374 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds