Wall clock time and date at job start Wed Apr 1 2020 03:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35992 * 117.00166 * 2 1 4 4 C 1.40154 * 125.83795 * 180.31853 * 3 2 1 5 5 C 1.36069 * 107.81580 * 180.13008 * 4 3 2 6 6 N 1.39482 * 126.21328 * 179.84760 * 5 4 3 7 7 C 1.34773 * 120.00393 * 359.69198 * 6 5 4 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00097 * 179.72700 * 7 6 5 10 10 C 1.46496 * 119.99875 * 0.26801 * 9 7 6 11 11 C 1.50703 * 109.47067 * 90.00619 * 10 9 7 12 12 H 1.08005 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00286 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00272 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47148 * 89.99653 * 15 13 11 17 17 H 1.48496 * 109.47010 * 210.00013 * 15 13 11 18 18 H 1.48501 * 109.46644 * 329.99739 * 15 13 11 19 19 C 1.46504 * 119.99854 * 180.27545 * 9 7 6 20 20 C 1.50695 * 109.47163 * 89.99960 * 19 9 7 21 21 C 1.38226 * 119.62289 * 95.00028 * 20 19 9 22 22 C 1.38627 * 119.16081 * 179.97438 * 21 20 19 23 23 C 1.38674 * 118.42421 * 359.97438 * 22 21 20 24 24 C 1.38185 * 119.15917 * 359.97438 * 23 22 21 25 25 N 1.31858 * 119.61703 * 274.72305 * 20 19 9 26 26 N 1.35802 * 107.56627 * 359.58450 * 5 4 3 27 27 C 1.46500 * 126.04363 * 180.26375 * 26 5 4 28 28 N 1.31107 * 125.83205 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47072 * 299.99759 * 1 2 3 30 30 H 1.09000 * 109.47420 * 59.99593 * 1 2 3 31 31 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 32 32 H 1.07991 * 126.09383 * 359.97438 * 4 3 2 33 33 H 0.97000 * 119.99495 * 179.68718 * 6 5 4 34 34 H 1.08997 * 109.47346 * 210.00204 * 10 9 7 35 35 H 1.09004 * 109.47612 * 330.00302 * 10 9 7 36 36 H 0.97009 * 119.99873 * 179.97438 * 14 13 11 37 37 H 1.08994 * 109.46719 * 209.99532 * 19 9 7 38 38 H 1.08996 * 109.47068 * 329.99428 * 19 9 7 39 39 H 1.07998 * 120.41761 * 359.95341 * 21 20 19 40 40 H 1.08002 * 120.78778 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.41719 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.61261 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47109 * 90.00375 * 27 26 5 44 44 H 1.09000 * 109.46754 * 209.99626 * 27 26 5 45 45 H 1.09001 * 109.47229 * 330.00042 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4313 1.4270 -0.0063 5 6 3.6437 2.7710 -0.0010 6 7 4.8839 3.4093 -0.0016 7 6 6.0172 2.6799 -0.0015 8 8 5.9586 1.4654 -0.0005 9 7 7.2155 3.2967 -0.0076 10 6 7.2861 4.7600 -0.0083 11 6 7.3175 5.2621 1.4122 12 1 7.2874 4.5613 2.2335 13 6 7.3836 6.6161 1.6635 14 7 7.4198 7.4695 0.6635 15 14 7.4218 7.2386 3.4244 16 1 8.8303 7.3364 3.8844 17 1 6.7855 8.5787 3.4896 18 1 6.6798 6.2952 4.2990 19 6 8.4474 2.5038 -0.0136 20 6 8.8627 2.2317 -1.4364 21 6 9.7821 3.0615 -2.0504 22 6 10.1577 2.8020 -3.3593 23 6 9.5925 1.7124 -4.0046 24 6 8.6805 0.9267 -3.3260 25 7 8.3491 1.2016 -2.0795 26 7 2.4288 3.3779 -0.0011 27 6 2.1871 4.8228 -0.0017 28 7 1.4478 2.3781 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 4.1939 0.6624 -0.0116 33 1 4.9306 4.3781 -0.0021 34 1 8.1900 5.0799 -0.5267 35 1 6.4122 5.1658 -0.5179 36 1 7.4659 8.4222 0.8403 37 1 9.2371 3.0557 0.4961 38 1 8.2739 1.5590 0.5013 39 1 10.2021 3.9015 -1.5172 40 1 10.8741 3.4330 -3.8643 41 1 9.8623 1.4804 -5.0242 42 1 8.2355 0.0767 -3.8217 43 1 2.1269 5.1807 -1.0295 44 1 1.2494 5.0345 0.5121 45 1 3.0050 5.3283 0.5117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881248080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:34 Heat of formation + Delta-G solvation = 54.844938 kcal Electronic energy + Delta-G solvation = -30356.525681 eV Core-core repulsion = 26183.828291 eV Total energy + Delta-G solvation = -4172.697390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62935 -41.38022 -40.63672 -39.20915 -37.00222 -35.88261 -34.68354 -33.66805 -33.32547 -32.66089 -30.14074 -29.44418 -28.74689 -27.42412 -26.76681 -25.06826 -24.27371 -23.59900 -22.57299 -21.86261 -20.59158 -19.79500 -18.74326 -18.26733 -17.65213 -17.33742 -17.21908 -17.12359 -17.01866 -16.61483 -16.47474 -16.17929 -16.00846 -15.61317 -15.25177 -15.01027 -14.54595 -14.35514 -14.32394 -14.17907 -13.87797 -13.61297 -13.52714 -13.38665 -13.11628 -12.81127 -12.76191 -12.63503 -12.55395 -12.42206 -12.12001 -11.78273 -11.76113 -11.55214 -11.00976 -10.74807 -10.59679 -10.31119 -9.93842 -9.66304 -9.47197 -9.10550 -8.21331 -6.36198 0.15831 0.45352 0.69075 0.98036 1.42171 1.47098 1.54332 1.67652 1.71882 2.27161 2.36432 2.44986 2.84806 3.09190 3.12038 3.45080 3.53030 3.87304 4.06596 4.21506 4.29957 4.30968 4.37168 4.38754 4.40437 4.47600 4.50743 4.60376 4.62212 4.64869 4.73732 4.76525 4.84521 4.91168 4.98113 5.11968 5.26132 5.31387 5.32262 5.55411 5.72078 5.85369 5.87909 6.00613 6.03859 6.29689 6.59566 6.69712 6.90777 7.19843 7.35359 7.50580 8.83184 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.006779 B = 0.004636 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4129.439817 B = 6038.613178 C = 9353.915698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.303 6.303 3 C 0.268 3.732 4 C -0.315 4.315 5 C 0.360 3.640 6 N -0.650 5.650 7 C 0.710 3.290 8 O -0.584 6.584 9 N -0.598 5.598 10 C 0.254 3.746 11 C -0.549 4.549 12 H 0.053 0.947 13 C 0.034 3.966 14 N -0.911 5.911 15 Si 0.950 3.050 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.277 1.277 19 C 0.186 3.814 20 C 0.092 3.908 21 C -0.163 4.163 22 C -0.079 4.079 23 C -0.165 4.165 24 C 0.076 3.924 25 N -0.496 5.496 26 N -0.382 5.382 27 C 0.095 3.905 28 N -0.349 5.349 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.158 0.842 33 H 0.421 0.579 34 H 0.036 0.964 35 H 0.021 0.979 36 H 0.269 0.731 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -5.266 -7.196 9.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.208 6.208 3 C 0.065 3.935 4 C -0.348 4.348 5 C 0.137 3.863 6 N -0.302 5.302 7 C 0.411 3.589 8 O -0.462 6.462 9 N -0.332 5.332 10 C 0.134 3.866 11 C -0.588 4.588 12 H 0.071 0.929 13 C -0.167 4.167 14 N -0.550 5.550 15 Si 0.776 3.224 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.202 1.202 19 C 0.062 3.938 20 C -0.046 4.046 21 C -0.183 4.183 22 C -0.105 4.105 23 C -0.185 4.185 24 C -0.082 4.082 25 N -0.206 5.206 26 N -0.175 5.175 27 C -0.045 4.045 28 N -0.190 5.190 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.261 0.739 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.160 0.840 40 H 0.183 0.817 41 H 0.186 0.814 42 H 0.186 0.814 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.222 -6.028 -6.787 10.012 hybrid contribution 1.190 1.374 0.565 1.904 sum -3.032 -4.654 -6.223 8.341 Atomic orbital electron populations 1.23223 0.75843 1.05397 1.02138 1.86283 1.24017 1.21045 1.89442 1.20305 0.91124 0.85607 0.96511 1.20710 0.94172 0.94496 1.25373 1.17611 0.80374 0.90029 0.98322 1.42078 1.01405 1.10981 1.75758 1.15649 0.80624 0.84619 0.77993 1.90827 1.85574 1.12127 1.57672 1.47243 1.02800 1.08311 1.74872 1.19106 0.97722 0.73412 0.96376 1.21642 1.52369 0.92025 0.92747 0.92912 1.25475 0.94204 0.96716 1.00346 1.69985 1.49778 1.03013 1.32219 0.85680 0.78403 0.77565 0.80743 1.20107 1.20608 1.20241 1.20118 0.85910 0.96482 0.91314 1.21689 0.93937 0.91623 0.97349 1.22233 0.98699 1.00343 0.97064 1.21976 0.98246 0.96669 0.93573 1.22505 0.97647 0.95779 1.02570 1.23226 0.95248 0.99689 0.90010 1.67550 1.24161 1.18247 1.10646 1.48231 0.99976 1.07037 1.62207 1.22174 1.05392 0.72050 1.04870 1.77291 1.11493 0.94586 1.35618 0.92485 0.92398 0.85245 0.82419 0.73908 0.94612 0.96082 0.92162 0.87328 0.90201 0.83957 0.81716 0.81418 0.81435 0.89119 0.87031 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.69 113.37 1.21 1.84 16 2 O -0.30 -9.96 10.58 -93.47 -0.99 -10.95 16 3 C 0.27 10.06 7.88 85.27 0.67 10.73 16 4 C -0.32 -13.13 9.67 22.23 0.21 -12.92 16 5 C 0.36 14.06 7.68 131.14 1.01 15.06 16 6 N -0.65 -25.81 5.28 -321.94 -1.70 -27.51 16 7 C 0.71 30.93 8.24 179.06 1.48 32.41 16 8 O -0.58 -27.78 13.05 -4.01 -0.05 -27.83 16 9 N -0.60 -24.66 2.44 -848.58 -2.07 -26.73 16 10 C 0.25 11.11 4.93 85.63 0.42 11.53 16 11 C -0.55 -26.17 9.39 25.60 0.24 -25.93 16 12 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 13 C 0.03 1.64 5.46 84.65 0.46 2.10 16 14 N -0.91 -45.44 13.29 21.45 0.28 -45.15 16 15 Si 0.95 39.09 29.54 68.60 2.03 41.12 16 16 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 19 C 0.19 6.88 5.71 85.63 0.49 7.37 16 20 C 0.09 3.18 6.36 42.55 0.27 3.45 16 21 C -0.16 -4.63 9.72 22.36 0.22 -4.42 16 22 C -0.08 -1.76 10.18 22.47 0.23 -1.53 16 23 C -0.17 -3.52 10.11 22.36 0.23 -3.29 16 24 C 0.08 2.08 11.18 84.67 0.95 3.03 16 25 N -0.50 -17.78 10.27 -183.89 -1.89 -19.67 16 26 N -0.38 -12.87 4.04 -366.03 -1.48 -14.35 16 27 C 0.09 2.27 11.29 127.77 1.44 3.72 16 28 N -0.35 -12.25 11.96 -170.58 -2.04 -14.29 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.16 7.27 5.82 -2.92 -0.02 7.26 16 33 H 0.42 15.89 5.71 -92.71 -0.53 15.36 16 34 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 35 H 0.02 0.95 6.36 -2.38 -0.02 0.94 16 36 H 0.27 12.81 8.31 -92.70 -0.77 12.04 16 37 H 0.11 3.65 7.97 -2.39 -0.02 3.63 16 38 H 0.08 3.14 7.42 -2.39 -0.02 3.12 16 39 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 42 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.09 2.15 7.51 -2.39 -0.02 2.13 16 Total: -1.00 -67.11 388.18 2.12 -64.99 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.50 Total: 37.21 kcal Atomic # 6 Polarization: 33.64 SS G_CDS: 9.53 Total: 43.17 kcal Atomic # 7 Polarization: -138.81 SS G_CDS: -8.89 Total: -147.70 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.04 Total: -38.78 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -67.11 2.12 -64.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881248080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.831 kcal (2) G-P(sol) polarization free energy of solvation -67.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds