Wall clock time and date at job start Wed Apr 1 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47216 * 2 1 4 4 C 1.34785 * 119.99697 * 273.60144 * 3 2 1 5 5 O 1.21543 * 119.99552 * 185.27173 * 4 3 2 6 6 C 1.47909 * 119.99774 * 5.26894 * 4 3 2 7 7 C 1.39614 * 121.00564 * 112.60693 * 6 4 3 8 8 C 1.39070 * 119.23202 * 179.97438 * 7 6 4 9 9 O 1.35729 * 119.27630 * 180.02562 * 8 7 6 10 10 N 1.31865 * 121.45417 * 359.97438 * 8 7 6 11 11 C 1.33077 * 121.83267 * 0.02562 * 10 8 7 12 12 N 1.35729 * 133.21180 * 180.02562 * 11 10 8 13 13 C 1.30210 * 109.68199 * 179.28727 * 12 11 10 14 14 N 1.35972 * 110.07155 * 0.61527 * 13 12 11 15 15 C 1.46503 * 126.36042 * 179.45644 * 14 13 12 16 16 C 1.37603 * 107.27329 * 359.48244 * 14 13 12 17 17 C 1.46495 * 120.00165 * 93.59950 * 3 2 1 18 18 C 1.53495 * 114.20669 * 120.00475 * 17 3 2 19 19 N 1.47067 * 87.98989 * 87.51832 * 18 17 3 20 20 C 1.36932 * 136.05886 * 207.08740 * 19 18 17 21 21 H 1.08005 * 119.99897 * 355.70876 * 20 19 18 22 22 C 1.38807 * 120.00080 * 175.70332 * 20 19 18 23 23 N 1.31622 * 120.00067 * 184.07765 * 22 20 19 24 24 Si 1.86805 * 119.99982 * 4.08466 * 22 20 19 25 25 H 1.48502 * 109.47152 * 174.54050 * 24 22 20 26 26 H 1.48495 * 109.47221 * 294.54290 * 24 22 20 27 27 H 1.48502 * 109.46896 * 54.54183 * 24 22 20 28 28 C 1.47069 * 87.88481 * 27.34233 * 19 18 17 29 29 H 1.08993 * 109.47328 * 59.99904 * 1 2 3 30 30 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46963 * 299.99902 * 1 2 3 32 32 H 1.09001 * 109.47260 * 240.00115 * 2 1 3 33 33 H 1.08998 * 109.47375 * 119.99621 * 2 1 3 34 34 H 1.08000 * 120.37992 * 359.97438 * 7 6 4 35 35 H 0.96703 * 114.00273 * 89.99280 * 9 8 7 36 36 H 1.08003 * 124.96621 * 180.09956 * 13 12 11 37 37 H 1.08997 * 109.47617 * 275.23418 * 15 14 13 38 38 H 1.08997 * 109.47179 * 35.24314 * 15 14 13 39 39 H 1.09004 * 109.46709 * 155.23322 * 15 14 13 40 40 H 1.08997 * 113.28385 * 346.93033 * 17 3 2 41 41 H 1.09002 * 113.46821 * 332.73113 * 18 17 3 42 42 H 1.09002 * 113.46610 * 202.30061 * 18 17 3 43 43 H 0.97000 * 120.00124 * 5.01790 * 23 22 20 44 44 H 1.08999 * 113.46434 * 87.43421 * 28 19 18 45 45 H 1.08991 * 113.46994 * 217.88102 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1738 2.0410 -1.1650 5 8 2.6686 3.1511 -1.1733 6 6 1.7424 1.4139 -2.4332 7 6 0.6686 1.9294 -3.1616 8 6 0.2946 1.3109 -4.3497 9 8 -0.7488 1.8115 -5.0588 10 7 0.9321 0.2493 -4.8032 11 6 1.9618 -0.2834 -4.1498 12 7 2.7688 -1.3466 -4.3957 13 6 3.6558 -1.4522 -3.4484 14 7 3.4700 -0.4727 -2.5238 15 6 4.2590 -0.2662 -1.3067 16 6 2.4029 0.2880 -2.9433 17 6 2.3376 2.0453 1.2662 18 6 3.7969 2.5062 1.3846 19 7 3.3984 3.7635 0.7341 20 6 4.0140 4.7129 -0.0370 21 1 5.0738 4.6448 -0.2338 22 6 3.2761 5.7629 -0.5658 23 7 3.8503 6.6305 -1.3721 24 14 1.4680 5.9448 -0.1330 25 1 0.9447 7.2077 -0.7133 26 1 0.7086 4.7944 -0.6853 27 1 1.3132 5.9770 1.3435 28 6 2.0493 3.5556 1.2815 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.1346 2.7983 -2.8064 35 1 -0.4968 2.4796 -5.7109 36 1 4.4217 -2.2122 -3.3995 37 1 3.8692 -0.8987 -0.5092 38 1 5.2999 -0.5253 -1.5002 39 1 4.1949 0.7794 -1.0054 40 1 1.9658 1.5094 2.1395 41 1 4.4899 1.9105 0.7904 42 1 4.1287 2.6366 2.4147 43 1 4.7684 6.4960 -1.6547 44 1 1.9204 3.9626 2.2844 45 1 1.2533 3.8540 0.5994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950497799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:58 Heat of formation + Delta-G solvation = 154.330454 kcal Electronic energy + Delta-G solvation = -32985.617766 eV Core-core repulsion = 28817.234392 eV Total energy + Delta-G solvation = -4168.383374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.63319 -40.34267 -39.25439 -37.22490 -36.17446 -35.56939 -34.17100 -32.20468 -31.92748 -30.13240 -29.28373 -27.76287 -27.18778 -25.41404 -25.11868 -23.34369 -23.23027 -22.72843 -21.44168 -20.07322 -19.12430 -18.16619 -17.97742 -17.38663 -17.22217 -16.83723 -16.29063 -15.68872 -15.54623 -15.24089 -14.75570 -14.62526 -14.35128 -14.13658 -13.84907 -13.68853 -13.58946 -13.43055 -13.29190 -13.06542 -12.58572 -12.39795 -12.01101 -11.84372 -11.71376 -11.62097 -11.29141 -11.23739 -11.03711 -10.80773 -10.78969 -10.50374 -10.29780 -9.72464 -9.17141 -9.12337 -8.87777 -8.78128 -8.50619 -8.42997 -8.19127 -6.78141 -6.07597 -2.94652 0.56404 1.05386 2.29369 2.41981 2.89746 3.14454 3.23387 3.48008 3.55450 3.71715 3.76170 4.21989 4.22750 4.46957 4.52074 4.77395 4.79651 4.80939 4.83489 4.90977 4.92346 5.00921 5.20198 5.24427 5.33060 5.34116 5.48191 5.54728 5.66475 5.68519 5.76213 5.78826 5.95948 6.00328 6.09093 6.14937 6.18957 6.24513 6.32099 6.45832 6.77123 7.05877 7.21649 7.32163 7.57610 7.64096 7.94068 8.39825 8.70703 9.17352 9.75454 10.55121 11.45326 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.005531 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.394829 B = 5060.892178 C = 5819.334870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.596 5.596 4 C 0.507 3.493 5 O -0.385 6.385 6 C -0.027 4.027 7 C -0.136 4.136 8 C 0.334 3.666 9 O -0.476 6.476 10 N -0.464 5.464 11 C 0.271 3.729 12 N -0.485 5.485 13 C 0.285 3.715 14 N -0.482 5.482 15 C 0.067 3.933 16 C 0.008 3.992 17 C 0.103 3.897 18 C 0.107 3.893 19 N -0.598 5.598 20 C -0.256 4.256 21 H 0.072 0.928 22 C -0.015 4.015 23 N -0.948 5.948 24 Si 1.082 2.918 25 H -0.305 1.305 26 H -0.296 1.296 27 H -0.299 1.299 28 C 0.085 3.915 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.403 0.597 36 H 0.224 0.776 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.044 0.956 43 H 0.255 0.745 44 H 0.047 0.953 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 -18.567 2.847 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.334 5.334 4 C 0.289 3.711 5 O -0.249 6.249 6 C -0.041 4.041 7 C -0.160 4.160 8 C 0.143 3.857 9 O -0.283 6.283 10 N -0.185 5.185 11 C 0.028 3.972 12 N -0.206 5.206 13 C -0.003 4.003 14 N -0.172 5.172 15 C -0.075 4.075 16 C -0.104 4.104 17 C -0.002 4.002 18 C -0.021 4.021 19 N -0.326 5.326 20 C -0.382 4.382 21 H 0.090 0.910 22 C -0.212 4.212 23 N -0.593 5.593 24 Si 0.918 3.082 25 H -0.233 1.233 26 H -0.225 1.225 27 H -0.227 1.227 28 C -0.041 4.041 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.172 0.828 35 H 0.261 0.739 36 H 0.240 0.760 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.138 -17.978 1.424 18.752 hybrid contribution 1.915 -0.014 1.352 2.344 sum -3.224 -17.992 2.776 18.488 Atomic orbital electron populations 1.22217 0.95937 1.01895 1.02901 1.21657 0.94838 0.83130 1.02400 1.47514 1.67498 1.13184 1.05171 1.18531 0.81909 0.87896 0.82745 1.91638 1.34292 1.14903 1.84038 1.19499 0.95036 0.92207 0.97367 1.21940 0.96760 1.01409 0.95885 1.18471 0.87632 0.89790 0.89807 1.84792 1.28322 1.59951 1.55237 1.65827 1.06410 1.11684 1.34566 1.18848 0.94358 0.94379 0.89589 1.70339 1.06478 1.18189 1.25624 1.25580 0.98340 0.92282 0.84117 1.45135 1.25856 1.24784 1.21433 1.22382 0.95471 1.05518 0.84093 1.19539 0.94346 0.97081 0.99478 1.22766 0.98350 0.94529 0.84579 1.22755 0.93828 0.89160 0.96356 1.45755 1.06504 1.24172 1.56173 1.19758 0.92773 1.02415 1.23237 0.91013 1.25338 1.04782 0.93859 0.97238 1.70924 1.14882 1.37479 1.35983 0.83561 0.76518 0.73543 0.74548 1.23322 1.22525 1.22709 1.23105 0.92071 0.91421 0.97530 0.92394 0.91973 0.91890 0.91200 0.90296 0.82833 0.73872 0.75991 0.90048 0.89120 0.88375 0.88746 0.94370 0.93895 0.93551 0.93526 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.17 37.16 0.38 -1.44 16 2 C 0.10 1.11 4.40 -4.04 -0.02 1.10 16 3 N -0.60 -8.74 2.08 -166.81 -0.35 -9.09 16 4 C 0.51 9.32 4.71 -12.30 -0.06 9.26 16 5 O -0.38 -9.16 8.86 5.33 0.05 -9.11 16 6 C -0.03 -0.45 4.22 -104.71 -0.44 -0.89 16 7 C -0.14 -2.23 9.68 -38.76 -0.38 -2.61 16 8 C 0.33 5.27 7.71 -17.23 -0.13 5.14 16 9 O -0.48 -6.31 13.55 -18.90 -0.26 -6.56 16 10 N -0.46 -8.06 10.41 -12.78 -0.13 -8.19 16 11 C 0.27 4.52 8.37 -156.98 -1.31 3.21 16 12 N -0.49 -7.20 11.27 -13.59 -0.15 -7.35 16 13 C 0.28 2.97 12.50 -89.76 -1.12 1.85 16 14 N -0.48 -5.72 2.67 -122.88 -0.33 -6.04 16 15 C 0.07 0.63 9.20 59.85 0.55 1.19 16 16 C 0.01 0.13 5.30 -83.67 -0.44 -0.31 16 17 C 0.10 1.56 4.87 -67.67 -0.33 1.23 16 18 C 0.11 1.89 8.22 -8.51 -0.07 1.82 16 19 N -0.60 -14.05 2.07 -184.60 -0.38 -14.43 16 20 C -0.26 -7.32 9.08 -15.06 -0.14 -7.46 16 21 H 0.07 2.22 8.05 -52.48 -0.42 1.79 16 22 C -0.02 -0.46 4.98 -17.43 -0.09 -0.55 16 23 N -0.95 -30.88 13.70 55.49 0.76 -30.12 16 24 Si 1.08 28.33 23.99 -169.99 -4.08 24.25 16 25 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 26 H -0.30 -7.33 6.07 56.52 0.34 -6.99 16 27 H -0.30 -7.34 6.70 56.52 0.38 -6.96 16 28 C 0.09 1.73 4.96 -8.36 -0.04 1.68 16 29 H 0.06 0.73 7.45 -51.93 -0.39 0.35 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.78 3.79 -51.93 -0.20 0.59 16 33 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 35 H 0.40 3.41 9.06 45.56 0.41 3.83 16 36 H 0.22 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.08 0.58 6.92 -51.93 -0.36 0.22 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.32 4.86 -51.93 -0.25 1.07 16 40 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 41 H 0.04 0.66 7.17 -51.93 -0.37 0.28 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.25 8.27 8.73 -40.82 -0.36 7.91 16 44 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 45 H 0.06 1.31 3.52 -51.93 -0.18 1.13 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -39.86 349.28 -8.03 -47.89 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.79 Total: 0.28 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: -3.64 Total: 13.22 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -0.58 Total: -75.23 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.21 Total: -15.68 kcal Atomic # 14 Polarization: 28.33 SS G_CDS: -4.08 Total: 24.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -39.86 -8.03 -47.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950497799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.220 kcal (2) G-P(sol) polarization free energy of solvation -39.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds