Wall clock time and date at job start Wed Apr 1 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47216 * 2 1 4 4 C 1.34785 * 119.99697 * 273.60144 * 3 2 1 5 5 O 1.21543 * 119.99552 * 185.27173 * 4 3 2 6 6 C 1.47909 * 119.99774 * 5.26894 * 4 3 2 7 7 C 1.39614 * 121.00564 * 112.60693 * 6 4 3 8 8 C 1.39070 * 119.23202 * 179.97438 * 7 6 4 9 9 O 1.35729 * 119.27630 * 180.02562 * 8 7 6 10 10 N 1.31865 * 121.45417 * 359.97438 * 8 7 6 11 11 C 1.33077 * 121.83267 * 0.02562 * 10 8 7 12 12 N 1.35729 * 133.21180 * 180.02562 * 11 10 8 13 13 C 1.30210 * 109.68199 * 179.28727 * 12 11 10 14 14 N 1.35972 * 110.07155 * 0.61527 * 13 12 11 15 15 C 1.46503 * 126.36042 * 179.45644 * 14 13 12 16 16 C 1.37603 * 107.27329 * 359.48244 * 14 13 12 17 17 C 1.46495 * 120.00165 * 93.59950 * 3 2 1 18 18 C 1.53495 * 114.20669 * 120.00475 * 17 3 2 19 19 N 1.47067 * 87.98989 * 87.51832 * 18 17 3 20 20 C 1.36932 * 136.05886 * 207.08740 * 19 18 17 21 21 H 1.08005 * 119.99897 * 355.70876 * 20 19 18 22 22 C 1.38807 * 120.00080 * 175.70332 * 20 19 18 23 23 N 1.31622 * 120.00067 * 184.07765 * 22 20 19 24 24 Si 1.86805 * 119.99982 * 4.08466 * 22 20 19 25 25 H 1.48502 * 109.47152 * 174.54050 * 24 22 20 26 26 H 1.48495 * 109.47221 * 294.54290 * 24 22 20 27 27 H 1.48502 * 109.46896 * 54.54183 * 24 22 20 28 28 C 1.47069 * 87.88481 * 27.34233 * 19 18 17 29 29 H 1.08993 * 109.47328 * 59.99904 * 1 2 3 30 30 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46963 * 299.99902 * 1 2 3 32 32 H 1.09001 * 109.47260 * 240.00115 * 2 1 3 33 33 H 1.08998 * 109.47375 * 119.99621 * 2 1 3 34 34 H 1.08000 * 120.37992 * 359.97438 * 7 6 4 35 35 H 0.96703 * 114.00273 * 89.99280 * 9 8 7 36 36 H 1.08003 * 124.96621 * 180.09956 * 13 12 11 37 37 H 1.08997 * 109.47617 * 275.23418 * 15 14 13 38 38 H 1.08997 * 109.47179 * 35.24314 * 15 14 13 39 39 H 1.09004 * 109.46709 * 155.23322 * 15 14 13 40 40 H 1.08997 * 113.28385 * 346.93033 * 17 3 2 41 41 H 1.09002 * 113.46821 * 332.73113 * 18 17 3 42 42 H 1.09002 * 113.46610 * 202.30061 * 18 17 3 43 43 H 0.97000 * 120.00124 * 5.01790 * 23 22 20 44 44 H 1.08999 * 113.46434 * 87.43421 * 28 19 18 45 45 H 1.08991 * 113.46994 * 217.88102 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1738 2.0410 -1.1650 5 8 2.6686 3.1511 -1.1733 6 6 1.7424 1.4139 -2.4332 7 6 0.6686 1.9294 -3.1616 8 6 0.2946 1.3109 -4.3497 9 8 -0.7488 1.8115 -5.0588 10 7 0.9321 0.2493 -4.8032 11 6 1.9618 -0.2834 -4.1498 12 7 2.7688 -1.3466 -4.3957 13 6 3.6558 -1.4522 -3.4484 14 7 3.4700 -0.4727 -2.5238 15 6 4.2590 -0.2662 -1.3067 16 6 2.4029 0.2880 -2.9433 17 6 2.3376 2.0453 1.2662 18 6 3.7969 2.5062 1.3846 19 7 3.3984 3.7635 0.7341 20 6 4.0140 4.7129 -0.0370 21 1 5.0738 4.6448 -0.2338 22 6 3.2761 5.7629 -0.5658 23 7 3.8503 6.6305 -1.3721 24 14 1.4680 5.9448 -0.1330 25 1 0.9447 7.2077 -0.7133 26 1 0.7086 4.7944 -0.6853 27 1 1.3132 5.9770 1.3435 28 6 2.0493 3.5556 1.2815 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.1346 2.7983 -2.8064 35 1 -0.4968 2.4796 -5.7109 36 1 4.4217 -2.2122 -3.3995 37 1 3.8692 -0.8987 -0.5092 38 1 5.2999 -0.5253 -1.5002 39 1 4.1949 0.7794 -1.0054 40 1 1.9658 1.5094 2.1395 41 1 4.4899 1.9105 0.7904 42 1 4.1287 2.6366 2.4147 43 1 4.7684 6.4960 -1.6547 44 1 1.9204 3.9626 2.2844 45 1 1.2533 3.8540 0.5994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950497799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:57 Heat of formation + Delta-G solvation = 121.716025 kcal Electronic energy + Delta-G solvation = -32987.032034 eV Core-core repulsion = 28817.234392 eV Total energy + Delta-G solvation = -4169.797642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.69613 -41.71016 -40.38546 -38.68699 -37.28747 -36.83211 -35.24561 -34.26715 -33.12226 -31.30367 -30.39454 -29.43708 -28.14726 -26.91691 -26.40693 -24.59341 -24.36447 -23.97888 -22.67508 -21.51865 -20.33997 -19.55186 -19.19987 -19.06402 -18.34614 -18.00435 -17.53246 -16.98467 -16.75930 -16.36219 -16.27665 -15.80264 -15.68916 -15.50984 -15.25196 -15.05370 -14.79089 -14.65519 -14.47275 -14.34755 -13.66398 -13.46769 -13.20412 -13.05601 -12.95135 -12.90727 -12.64533 -12.62502 -12.38358 -12.16973 -12.07629 -11.86307 -11.85557 -11.18958 -11.07703 -10.96860 -10.68084 -10.16681 -9.88086 -9.61398 -9.51061 -8.70897 -8.39301 -5.13499 -0.59265 -0.11006 1.30840 1.34847 1.41413 1.48219 1.59454 1.75782 1.92830 2.17393 2.55115 2.67728 3.07182 3.19778 3.27273 3.36200 3.47052 3.59690 3.64268 3.91314 3.96502 4.05298 4.09112 4.26607 4.30446 4.37403 4.45058 4.46531 4.58571 4.59660 4.61981 4.69830 4.75797 4.79419 4.88302 4.90550 4.96791 5.06733 5.15211 5.28617 5.38922 5.82295 5.91914 6.15178 6.30134 6.38822 6.58869 6.82209 6.89994 7.36874 7.62465 8.51330 9.17290 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.005531 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.394829 B = 5060.892178 C = 5819.334870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.586 5.586 4 C 0.514 3.486 5 O -0.454 6.454 6 C -0.036 4.036 7 C -0.152 4.152 8 C 0.337 3.663 9 O -0.479 6.479 10 N -0.490 5.490 11 C 0.254 3.746 12 N -0.525 5.525 13 C 0.317 3.683 14 N -0.481 5.481 15 C 0.066 3.934 16 C 0.002 3.998 17 C 0.132 3.868 18 C 0.107 3.893 19 N -0.631 5.631 20 C -0.211 4.211 21 H 0.032 0.968 22 C -0.083 4.083 23 N -0.998 5.998 24 Si 1.123 2.877 25 H -0.327 1.327 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.071 3.929 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.145 0.855 35 H 0.422 0.578 36 H 0.284 0.716 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.057 0.943 40 H 0.158 0.842 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.234 0.766 44 H 0.066 0.934 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 -23.165 5.738 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.321 5.321 4 C 0.298 3.702 5 O -0.323 6.323 6 C -0.050 4.050 7 C -0.176 4.176 8 C 0.146 3.854 9 O -0.289 6.289 10 N -0.212 5.212 11 C 0.011 3.989 12 N -0.247 5.247 13 C 0.030 3.970 14 N -0.169 5.169 15 C -0.074 4.074 16 C -0.111 4.111 17 C 0.028 3.972 18 C -0.019 4.019 19 N -0.359 5.359 20 C -0.339 4.339 21 H 0.050 0.950 22 C -0.272 4.272 23 N -0.648 5.648 24 Si 0.956 3.044 25 H -0.257 1.257 26 H -0.214 1.214 27 H -0.198 1.198 28 C -0.055 4.055 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.283 0.717 36 H 0.299 0.701 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.175 0.825 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.083 0.917 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.333 -22.686 4.399 23.716 hybrid contribution 2.081 1.148 0.478 2.424 sum -3.252 -21.538 4.877 22.322 Atomic orbital electron populations 1.22192 0.95716 1.02970 1.01823 1.21962 0.94935 0.80704 1.04425 1.47589 1.66042 1.14514 1.03979 1.18710 0.80526 0.86966 0.83995 1.91585 1.37740 1.17750 1.85235 1.19430 0.95505 0.92946 0.97114 1.21922 0.97545 1.01562 0.96566 1.18438 0.87652 0.89550 0.89761 1.84738 1.27810 1.60596 1.55719 1.65856 1.07481 1.12440 1.35459 1.19219 0.94496 0.95085 0.90055 1.70365 1.07943 1.18517 1.27860 1.26770 0.97145 0.91456 0.81606 1.45391 1.24882 1.24300 1.22370 1.22575 0.97230 1.03670 0.83969 1.19438 0.95436 0.96955 0.99319 1.22644 0.96023 0.92218 0.86354 1.23035 0.95759 0.86284 0.96849 1.45722 1.08648 1.25010 1.56503 1.19449 0.90869 1.02166 1.21412 0.94997 1.26362 1.07822 0.94892 0.98079 1.71034 1.14048 1.40030 1.39705 0.83033 0.73052 0.72601 0.75710 1.25679 1.21355 1.19848 1.23365 0.89471 0.95380 0.97252 0.95375 0.89840 0.91100 0.91507 0.85759 0.83681 0.71690 0.70125 0.86737 0.85903 0.92390 0.82461 0.94081 0.91161 0.95673 0.91674 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.17 71.98 0.73 -2.22 16 2 C 0.10 1.69 4.40 86.38 0.38 2.07 16 3 N -0.59 -15.21 2.08 -799.94 -1.66 -16.87 16 4 C 0.51 18.62 4.71 86.80 0.41 19.02 16 5 O -0.45 -22.10 8.86 -3.85 -0.03 -22.13 16 6 C -0.04 -1.21 4.22 -19.92 -0.08 -1.29 16 7 C -0.15 -5.21 9.68 22.80 0.22 -4.99 16 8 C 0.34 10.99 7.71 84.89 0.65 11.65 16 9 O -0.48 -13.09 13.55 -90.53 -1.23 -14.31 16 10 N -0.49 -17.34 10.41 -307.37 -3.20 -20.53 16 11 C 0.25 8.37 8.37 134.30 1.12 9.49 16 12 N -0.53 -14.53 11.27 -196.92 -2.22 -16.75 16 13 C 0.32 5.34 12.50 180.05 2.25 7.60 16 14 N -0.48 -9.85 2.67 -542.68 -1.45 -11.30 16 15 C 0.07 0.97 9.20 127.77 1.18 2.14 16 16 C 0.00 0.07 5.30 39.28 0.21 0.28 16 17 C 0.13 3.38 4.87 45.55 0.22 3.60 16 18 C 0.11 3.39 8.22 83.18 0.68 4.08 16 19 N -0.63 -29.06 2.07 -737.95 -1.53 -30.59 16 20 C -0.21 -12.50 9.08 84.03 0.76 -11.73 16 21 H 0.03 2.09 8.05 -2.91 -0.02 2.07 16 22 C -0.08 -5.23 4.98 84.86 0.42 -4.80 16 23 N -1.00 -69.24 13.70 21.65 0.30 -68.95 16 24 Si 1.12 59.66 23.99 68.60 1.65 61.30 16 25 H -0.33 -18.20 7.11 99.48 0.71 -17.50 16 26 H -0.29 -14.33 6.07 99.48 0.60 -13.73 16 27 H -0.27 -12.91 6.70 99.48 0.67 -12.24 16 28 C 0.07 2.68 4.96 83.27 0.41 3.09 16 29 H 0.03 0.66 7.45 -2.39 -0.02 0.64 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.22 3.79 -2.39 -0.01 1.21 16 33 H 0.12 1.05 8.04 -2.39 -0.02 1.03 16 34 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 35 H 0.42 7.50 9.06 -74.06 -0.67 6.83 16 36 H 0.28 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.11 0.92 6.92 -2.39 -0.02 0.90 16 38 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.41 4.86 -2.39 -0.01 1.40 16 40 H 0.16 2.28 8.09 -2.39 -0.02 2.26 16 41 H 0.04 1.29 7.17 -2.39 -0.02 1.27 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.23 16.46 8.73 -92.71 -0.81 15.65 16 44 H 0.07 2.25 8.06 -2.39 -0.02 2.24 16 45 H 0.04 1.52 3.52 -2.39 -0.01 1.51 16 Total: -1.00 -98.02 349.28 0.41 -97.61 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.21 Total: 4.53 kcal Atomic # 6 Polarization: 28.42 SS G_CDS: 9.58 Total: 38.00 kcal Atomic # 7 Polarization: -155.24 SS G_CDS: -9.76 Total: -165.00 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.26 Total: -36.45 kcal Atomic # 14 Polarization: 59.66 SS G_CDS: 1.65 Total: 61.30 kcal Total: -98.02 0.41 -97.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950497799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.326 kcal (2) G-P(sol) polarization free energy of solvation -98.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds