Wall clock time and date at job start Wed Apr 1 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47270 * 2 1 4 4 C 1.34781 * 119.99892 * 272.36177 * 3 2 1 5 5 O 1.21573 * 120.00195 * 184.61591 * 4 3 2 6 6 C 1.47706 * 119.99792 * 4.61320 * 4 3 2 7 7 C 1.40664 * 126.18854 * 185.80817 * 6 4 3 8 8 C 1.37807 * 105.16289 * 179.90826 * 7 6 4 9 9 C 1.46578 * 133.66245 * 180.02562 * 8 7 6 10 10 O 1.21765 * 120.77868 * 0.32531 * 9 8 7 11 11 N 1.35164 * 118.43856 * 180.30764 * 9 8 7 12 12 H 0.97000 * 119.99809 * 180.02562 * 11 9 8 13 13 C 1.38014 * 120.00128 * 359.97438 * 11 9 8 14 14 C 1.50693 * 118.98046 * 180.02562 * 13 11 9 15 15 C 1.32711 * 122.04316 * 0.02601 * 13 11 9 16 16 N 1.37307 * 107.07496 * 0.35223 * 8 7 6 17 17 N 1.28648 * 109.20500 * 359.76938 * 16 8 7 18 18 C 1.46503 * 120.00145 * 92.36124 * 3 2 1 19 19 C 1.53491 * 114.20492 * 232.65201 * 18 3 2 20 20 N 1.47059 * 87.98767 * 220.14924 * 19 18 3 21 21 C 1.36935 * 136.06191 * 207.09290 * 20 19 18 22 22 H 1.08006 * 119.99908 * 6.31374 * 21 20 19 23 23 C 1.38805 * 120.00512 * 186.32179 * 21 20 19 24 24 N 1.31620 * 120.00247 * 195.03133 * 23 21 20 25 25 Si 1.86802 * 119.99926 * 15.02546 * 23 21 20 26 26 H 1.48503 * 109.47186 * 270.00370 * 25 23 21 27 27 H 1.48498 * 109.46963 * 30.00282 * 25 23 21 28 28 H 1.48497 * 109.47287 * 150.00365 * 25 23 21 29 29 C 1.47068 * 87.88380 * 27.34186 * 20 19 18 30 30 H 1.09009 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47214 * 299.99912 * 1 2 3 32 32 H 1.08998 * 109.47297 * 59.99917 * 1 2 3 33 33 H 1.08996 * 109.47281 * 239.99545 * 2 1 3 34 34 H 1.09007 * 109.47158 * 120.00247 * 2 1 3 35 35 H 1.07995 * 127.42044 * 0.02562 * 7 6 4 36 36 H 1.09003 * 109.47420 * 0.02562 * 14 13 11 37 37 H 1.09000 * 109.47468 * 120.00191 * 14 13 11 38 38 H 1.09001 * 109.47305 * 240.00050 * 14 13 11 39 39 H 1.08000 * 119.32762 * 180.02562 * 15 13 11 40 40 H 1.08993 * 113.27913 * 5.72096 * 18 3 2 41 41 H 1.09003 * 113.46606 * 105.36508 * 19 18 3 42 42 H 1.09006 * 113.47181 * 334.93340 * 19 18 3 43 43 H 0.96994 * 120.00167 * 354.94443 * 24 23 21 44 44 H 1.09005 * 113.46271 * 87.44324 * 29 20 19 45 45 H 1.09003 * 113.47053 * 217.87851 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1976 2.0326 -1.1663 5 8 2.6816 3.1478 -1.1715 6 6 1.8060 1.3914 -2.4380 7 6 2.0372 1.8986 -3.7295 8 6 1.5015 0.9613 -4.5860 9 6 1.4008 0.8643 -6.0451 10 8 1.8568 1.7378 -6.7606 11 7 0.7903 -0.2176 -6.5777 12 1 0.7114 -0.3050 -7.5405 13 6 0.2800 -1.1984 -5.7516 14 6 -0.3956 -2.3951 -6.3700 15 6 0.3659 -1.1204 -4.4296 16 7 0.9760 -0.0413 -3.8089 17 7 1.1695 0.2393 -2.5684 18 6 2.3118 2.0544 1.2677 19 6 1.6182 3.4135 1.4337 20 7 2.8608 3.9154 2.0392 21 6 3.1948 4.8914 2.9397 22 1 2.4194 5.4392 3.4547 23 6 4.5298 5.1769 3.1907 24 7 4.8636 5.8867 4.2477 25 14 5.8527 4.5536 2.0285 26 1 6.3126 3.2139 2.4748 27 1 5.2978 4.4542 0.6547 28 1 6.9994 5.4971 2.0321 29 6 3.5878 2.9119 1.2471 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.5303 2.8225 -3.9932 36 1 -0.3790 -2.3010 -7.4558 37 1 0.1321 -3.3024 -6.0762 38 1 -1.4283 -2.4477 -6.0253 39 1 -0.0483 -1.9136 -3.8249 40 1 2.2238 1.3989 2.1340 41 1 0.7767 3.3897 2.1262 42 1 1.3718 3.8939 0.4867 43 1 4.1741 6.2722 4.8105 44 1 3.8608 3.2601 0.2508 45 1 4.4245 2.4607 1.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950979362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:45 Heat of formation + Delta-G solvation = 127.749486 kcal Electronic energy + Delta-G solvation = -30561.768744 eV Core-core repulsion = 26392.232732 eV Total energy + Delta-G solvation = -4169.536011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.51435 -40.63964 -39.97214 -37.97126 -37.19222 -35.59135 -33.62860 -32.34942 -32.08552 -31.28182 -30.19068 -28.24898 -27.17797 -25.11244 -24.81070 -24.21874 -23.10064 -22.94622 -21.99934 -20.14930 -19.71198 -19.07035 -18.51687 -17.53214 -17.22022 -17.06022 -16.53304 -16.06566 -15.46927 -15.27249 -14.99358 -14.80732 -14.44311 -14.32348 -14.18331 -13.93251 -13.77904 -13.41746 -13.37801 -13.25656 -13.20664 -12.89067 -12.40241 -12.11583 -11.93605 -11.65086 -11.41363 -11.40379 -11.07659 -11.02255 -10.68512 -10.52713 -10.49786 -10.07421 -9.67021 -9.47513 -9.46963 -9.05418 -8.54114 -8.42996 -8.17785 -6.96042 -6.17259 -3.06599 0.37711 0.85021 1.69418 1.79380 2.11162 2.76669 3.03942 3.36351 3.51309 3.56130 3.69422 3.75238 3.82821 3.92793 4.27474 4.58943 4.68806 4.75061 4.80091 4.88509 5.01150 5.06898 5.10635 5.13026 5.18793 5.28333 5.46209 5.50116 5.55209 5.69016 5.77093 5.83046 5.90432 5.94837 6.01624 6.16803 6.27313 6.41445 6.46305 6.52478 6.54527 6.72073 7.17379 7.27765 7.32828 7.42694 7.61836 8.34410 8.36900 9.11684 9.65201 10.53815 11.33563 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.002775 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.350828 B =10087.840091 C =10973.235047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.105 3.895 3 N -0.586 5.586 4 C 0.595 3.405 5 O -0.501 6.501 6 C -0.001 4.001 7 C -0.081 4.081 8 C -0.076 4.076 9 C 0.585 3.415 10 O -0.499 6.499 11 N -0.640 5.640 12 H 0.423 0.577 13 C 0.120 3.880 14 C -0.111 4.111 15 C -0.012 4.012 16 N -0.198 5.198 17 N -0.226 5.226 18 C 0.099 3.901 19 C 0.113 3.887 20 N -0.618 5.618 21 C -0.296 4.296 22 H 0.081 0.919 23 C -0.024 4.024 24 N -0.935 5.935 25 Si 1.057 2.943 26 H -0.296 1.296 27 H -0.273 1.273 28 H -0.297 1.297 29 C 0.083 3.917 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.179 0.821 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.184 0.816 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.048 0.952 43 H 0.259 0.741 44 H 0.088 0.912 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 -24.832 -23.602 37.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.018 4.018 3 N -0.319 5.319 4 C 0.380 3.620 5 O -0.374 6.374 6 C -0.155 4.155 7 C -0.110 4.110 8 C -0.198 4.198 9 C 0.374 3.626 10 O -0.371 6.371 11 N -0.283 5.283 12 H 0.263 0.737 13 C 0.016 3.984 14 C -0.169 4.169 15 C -0.129 4.129 16 N 0.018 4.982 17 N -0.064 5.064 18 C -0.005 4.005 19 C -0.015 4.015 20 N -0.346 5.346 21 C -0.423 4.423 22 H 0.099 0.901 23 C -0.223 4.223 24 N -0.578 5.578 25 Si 0.889 3.111 26 H -0.224 1.224 27 H -0.199 1.199 28 H -0.225 1.225 29 C -0.043 4.043 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.197 0.803 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.201 0.799 40 H 0.135 0.865 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.460 -24.414 -23.258 35.948 hybrid contribution -1.553 0.575 -0.594 1.760 sum -14.014 -23.839 -23.852 36.518 Atomic orbital electron populations 1.22083 0.95820 1.01573 1.02162 1.21758 0.94848 0.82061 1.03168 1.47851 1.64233 1.14166 1.05611 1.16834 0.79013 0.84937 0.81230 1.90856 1.42648 1.18369 1.85505 1.22182 1.04342 0.93366 0.95647 1.21818 1.00246 0.99862 0.89116 1.21691 1.11137 0.95251 0.91704 1.17060 0.77973 0.81392 0.86158 1.90983 1.46307 1.38192 1.61596 1.43564 1.54100 1.19519 1.11163 0.73742 1.19762 0.97427 0.92141 0.89095 1.20913 1.01216 0.93204 1.01522 1.20484 1.07915 0.93220 0.91307 1.43154 1.36512 1.14939 1.03618 1.74003 1.17831 1.16824 0.97757 1.23704 0.99864 0.93171 0.83745 1.22674 0.91577 0.90668 0.96541 1.45912 1.02827 1.39383 1.46492 1.20109 0.94140 1.13809 1.14224 0.90101 1.25732 0.96807 0.99690 1.00055 1.70922 1.35241 1.37736 1.13900 0.83865 0.75617 0.75060 0.76575 1.22374 1.19904 1.22495 1.23474 0.93865 0.89053 0.97858 0.92135 0.92704 0.92280 0.89173 0.90556 0.80322 0.90061 0.88759 0.88763 0.79857 0.86528 0.94109 0.93470 0.93055 0.89469 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.70 37.15 0.36 -1.25 16 2 C 0.11 1.21 5.69 -4.05 -0.02 1.18 16 3 N -0.59 -9.25 2.76 -166.90 -0.46 -9.71 16 4 C 0.60 10.30 7.13 -12.39 -0.09 10.21 16 5 O -0.50 -10.67 12.48 5.30 0.07 -10.60 16 6 C 0.00 -0.01 6.64 -82.89 -0.55 -0.56 16 7 C -0.08 -1.11 10.87 -38.82 -0.42 -1.53 16 8 C -0.08 -0.89 6.97 -82.21 -0.57 -1.46 16 9 C 0.58 6.11 7.96 -12.72 -0.10 6.01 16 10 O -0.50 -6.82 17.99 5.13 0.09 -6.73 16 11 N -0.64 -3.57 5.37 -9.57 -0.05 -3.62 16 12 H 0.42 1.23 8.64 -40.82 -0.35 0.87 16 13 C 0.12 0.43 6.76 -81.70 -0.55 -0.13 16 14 C -0.11 0.08 10.06 36.00 0.36 0.44 16 15 C -0.01 -0.06 10.68 -16.36 -0.17 -0.24 16 16 N -0.20 -1.97 3.65 -9.38 -0.03 -2.00 16 17 N -0.23 -2.64 7.08 33.32 0.24 -2.40 16 18 C 0.10 1.85 4.80 -67.68 -0.32 1.53 16 19 C 0.11 2.49 8.10 -8.52 -0.07 2.42 16 20 N -0.62 -16.58 3.64 -184.65 -0.67 -17.25 16 21 C -0.30 -9.09 11.03 -15.06 -0.17 -9.26 16 22 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 23 C -0.02 -0.76 5.50 -17.43 -0.10 -0.86 16 24 N -0.94 -30.86 13.70 55.49 0.76 -30.10 16 25 Si 1.06 28.81 25.47 -169.99 -4.33 24.48 16 26 H -0.30 -7.66 6.96 56.52 0.39 -7.27 16 27 H -0.27 -7.26 5.62 56.52 0.32 -6.94 16 28 H -0.30 -8.12 7.11 56.52 0.40 -7.71 16 29 C 0.08 1.97 4.96 -8.38 -0.04 1.93 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.67 6.69 -51.93 -0.35 0.33 16 33 H 0.09 0.99 5.64 -51.93 -0.29 0.70 16 34 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 35 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 36 H 0.08 -0.14 7.89 -51.93 -0.41 -0.55 16 37 H 0.09 -0.15 8.14 -51.93 -0.42 -0.58 16 38 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 39 H 0.18 0.43 8.03 -52.49 -0.42 0.01 16 40 H 0.12 1.96 7.96 -51.93 -0.41 1.54 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.10 6.49 -51.93 -0.34 0.76 16 43 H 0.26 8.42 8.73 -40.82 -0.36 8.06 16 44 H 0.09 2.20 4.13 -51.93 -0.21 1.99 16 45 H 0.04 1.02 6.08 -51.93 -0.32 0.71 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -40.41 363.74 -7.09 -47.50 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -5.72 Total: -3.48 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -2.46 Total: 8.43 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.22 Total: -65.08 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.16 Total: -17.33 kcal Atomic # 14 Polarization: 28.81 SS G_CDS: -4.33 Total: 24.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -40.41 -7.09 -47.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950979362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.250 kcal (2) G-P(sol) polarization free energy of solvation -40.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds