Wall clock time and date at job start Wed Apr 1 2020 03:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47270 * 2 1 4 4 C 1.34781 * 119.99892 * 272.36177 * 3 2 1 5 5 O 1.21573 * 120.00195 * 184.61591 * 4 3 2 6 6 C 1.47706 * 119.99792 * 4.61320 * 4 3 2 7 7 C 1.40664 * 126.18854 * 185.80817 * 6 4 3 8 8 C 1.37807 * 105.16289 * 179.90826 * 7 6 4 9 9 C 1.46578 * 133.66245 * 180.02562 * 8 7 6 10 10 O 1.21765 * 120.77868 * 0.32531 * 9 8 7 11 11 N 1.35164 * 118.43856 * 180.30764 * 9 8 7 12 12 H 0.97000 * 119.99809 * 180.02562 * 11 9 8 13 13 C 1.38014 * 120.00128 * 359.97438 * 11 9 8 14 14 C 1.50693 * 118.98046 * 180.02562 * 13 11 9 15 15 C 1.32711 * 122.04316 * 0.02601 * 13 11 9 16 16 N 1.37307 * 107.07496 * 0.35223 * 8 7 6 17 17 N 1.28648 * 109.20500 * 359.76938 * 16 8 7 18 18 C 1.46503 * 120.00145 * 92.36124 * 3 2 1 19 19 C 1.53491 * 114.20492 * 232.65201 * 18 3 2 20 20 N 1.47059 * 87.98767 * 220.14924 * 19 18 3 21 21 C 1.36935 * 136.06191 * 207.09290 * 20 19 18 22 22 H 1.08006 * 119.99908 * 6.31374 * 21 20 19 23 23 C 1.38805 * 120.00512 * 186.32179 * 21 20 19 24 24 N 1.31620 * 120.00247 * 195.03133 * 23 21 20 25 25 Si 1.86802 * 119.99926 * 15.02546 * 23 21 20 26 26 H 1.48503 * 109.47186 * 270.00370 * 25 23 21 27 27 H 1.48498 * 109.46963 * 30.00282 * 25 23 21 28 28 H 1.48497 * 109.47287 * 150.00365 * 25 23 21 29 29 C 1.47068 * 87.88380 * 27.34186 * 20 19 18 30 30 H 1.09009 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47214 * 299.99912 * 1 2 3 32 32 H 1.08998 * 109.47297 * 59.99917 * 1 2 3 33 33 H 1.08996 * 109.47281 * 239.99545 * 2 1 3 34 34 H 1.09007 * 109.47158 * 120.00247 * 2 1 3 35 35 H 1.07995 * 127.42044 * 0.02562 * 7 6 4 36 36 H 1.09003 * 109.47420 * 0.02562 * 14 13 11 37 37 H 1.09000 * 109.47468 * 120.00191 * 14 13 11 38 38 H 1.09001 * 109.47305 * 240.00050 * 14 13 11 39 39 H 1.08000 * 119.32762 * 180.02562 * 15 13 11 40 40 H 1.08993 * 113.27913 * 5.72096 * 18 3 2 41 41 H 1.09003 * 113.46606 * 105.36508 * 19 18 3 42 42 H 1.09006 * 113.47181 * 334.93340 * 19 18 3 43 43 H 0.96994 * 120.00167 * 354.94443 * 24 23 21 44 44 H 1.09005 * 113.46271 * 87.44324 * 29 20 19 45 45 H 1.09003 * 113.47053 * 217.87851 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1976 2.0326 -1.1663 5 8 2.6816 3.1478 -1.1715 6 6 1.8060 1.3914 -2.4380 7 6 2.0372 1.8986 -3.7295 8 6 1.5015 0.9613 -4.5860 9 6 1.4008 0.8643 -6.0451 10 8 1.8568 1.7378 -6.7606 11 7 0.7903 -0.2176 -6.5777 12 1 0.7114 -0.3050 -7.5405 13 6 0.2800 -1.1984 -5.7516 14 6 -0.3956 -2.3951 -6.3700 15 6 0.3659 -1.1204 -4.4296 16 7 0.9760 -0.0413 -3.8089 17 7 1.1695 0.2393 -2.5684 18 6 2.3118 2.0544 1.2677 19 6 1.6182 3.4135 1.4337 20 7 2.8608 3.9154 2.0392 21 6 3.1948 4.8914 2.9397 22 1 2.4194 5.4392 3.4547 23 6 4.5298 5.1769 3.1907 24 7 4.8636 5.8867 4.2477 25 14 5.8527 4.5536 2.0285 26 1 6.3126 3.2139 2.4748 27 1 5.2978 4.4542 0.6547 28 1 6.9994 5.4971 2.0321 29 6 3.5878 2.9119 1.2471 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.5303 2.8225 -3.9932 36 1 -0.3790 -2.3010 -7.4558 37 1 0.1321 -3.3024 -6.0762 38 1 -1.4283 -2.4477 -6.0253 39 1 -0.0483 -1.9136 -3.8249 40 1 2.2238 1.3989 2.1340 41 1 0.7767 3.3897 2.1262 42 1 1.3718 3.8939 0.4867 43 1 4.1741 6.2722 4.8105 44 1 3.8608 3.2601 0.2508 45 1 4.4245 2.4607 1.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950979362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:44 Heat of formation + Delta-G solvation = 96.238400 kcal Electronic energy + Delta-G solvation = -30563.135167 eV Core-core repulsion = 26392.232732 eV Total energy + Delta-G solvation = -4170.902435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -44.36059 -41.80760 -41.03704 -39.01712 -38.51354 -36.85756 -34.67021 -34.28252 -32.72143 -32.11036 -31.37869 -29.72139 -28.19856 -26.95286 -25.86127 -25.18959 -24.36505 -23.71677 -23.14595 -21.80556 -20.84176 -19.83519 -19.59925 -19.39553 -18.36436 -17.87522 -17.68466 -17.36404 -16.77140 -16.57576 -16.04979 -15.96900 -15.76354 -15.41124 -15.29951 -15.14646 -14.71467 -14.52685 -14.36836 -14.34086 -14.01761 -13.87286 -13.48599 -13.23317 -13.17462 -12.97046 -12.70290 -12.52622 -12.47734 -12.32237 -12.08089 -11.86455 -11.63421 -11.53274 -11.43189 -11.28268 -11.02389 -10.78098 -10.52787 -9.65433 -9.17947 -8.99732 -8.63844 -5.46356 -0.33806 0.00551 0.76161 1.06419 1.35304 1.48605 1.50369 1.67503 1.82378 2.03509 2.13463 2.48806 2.71874 3.00383 3.12345 3.15940 3.42832 3.57454 3.75317 3.96304 4.07901 4.17671 4.18603 4.29113 4.43316 4.51398 4.52439 4.63049 4.68227 4.72126 4.75191 4.81594 4.85727 4.88148 4.96276 5.09902 5.16163 5.18512 5.22069 5.25376 5.47781 5.49964 5.73850 5.77561 5.93844 6.30185 6.44856 6.63804 6.69502 7.04396 7.30938 8.28025 8.88491 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.002775 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.350828 B =10087.840091 C =10973.235047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.101 3.899 3 N -0.583 5.583 4 C 0.593 3.407 5 O -0.553 6.553 6 C -0.026 4.026 7 C -0.110 4.110 8 C -0.086 4.086 9 C 0.582 3.418 10 O -0.541 6.541 11 N -0.621 5.621 12 H 0.439 0.561 13 C 0.151 3.849 14 C -0.109 4.109 15 C -0.048 4.048 16 N -0.175 5.175 17 N -0.211 5.211 18 C 0.135 3.865 19 C 0.111 3.889 20 N -0.647 5.647 21 C -0.287 4.287 22 H 0.055 0.945 23 C -0.078 4.078 24 N -0.966 5.966 25 Si 1.098 2.902 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.299 1.299 29 C 0.074 3.926 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.163 0.837 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.222 0.778 40 H 0.149 0.851 41 H 0.054 0.946 42 H 0.033 0.967 43 H 0.248 0.752 44 H 0.073 0.927 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.295 -30.334 -25.927 43.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 N -0.314 5.314 4 C 0.380 3.620 5 O -0.430 6.430 6 C -0.177 4.177 7 C -0.140 4.140 8 C -0.209 4.209 9 C 0.372 3.628 10 O -0.417 6.417 11 N -0.264 5.264 12 H 0.282 0.718 13 C 0.047 3.953 14 C -0.166 4.166 15 C -0.164 4.164 16 N 0.041 4.959 17 N -0.052 5.052 18 C 0.031 3.969 19 C -0.015 4.015 20 N -0.376 5.376 21 C -0.414 4.414 22 H 0.072 0.928 23 C -0.271 4.271 24 N -0.611 5.611 25 Si 0.924 3.076 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.227 1.227 29 C -0.051 4.051 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.181 0.819 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.239 0.761 40 H 0.167 0.833 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.574 -30.021 -25.607 42.064 hybrid contribution -1.165 2.100 -0.114 2.404 sum -15.739 -27.921 -25.721 41.096 Atomic orbital electron populations 1.22026 0.94513 1.03311 1.01057 1.22092 0.95831 0.79359 1.04761 1.47873 1.63842 1.15650 1.03999 1.17218 0.77989 0.84359 0.82440 1.90817 1.45030 1.20720 1.86460 1.21574 1.06939 0.94921 0.94259 1.21753 1.01870 1.00463 0.89885 1.21745 1.11231 0.95414 0.92553 1.17017 0.78221 0.82163 0.85424 1.90963 1.48476 1.40105 1.62126 1.43555 1.52099 1.18294 1.12475 0.71804 1.20625 0.94345 0.91857 0.88485 1.21177 1.01872 0.91275 1.02324 1.21404 1.09385 0.93158 0.92410 1.43587 1.34367 1.15012 1.02955 1.73916 1.17396 1.15478 0.98426 1.23171 0.95286 0.92352 0.86105 1.22777 0.90712 0.92383 0.95660 1.46041 1.05743 1.39146 1.46633 1.20019 0.93540 1.13742 1.14146 0.92760 1.26852 0.99173 1.00272 1.00818 1.71002 1.34988 1.39837 1.15296 0.83318 0.73495 0.75792 0.74984 1.19700 1.19767 1.22732 1.23547 0.95932 0.89290 0.96327 0.88890 0.93472 0.93726 0.88329 0.88189 0.81900 0.88451 0.86604 0.86691 0.76109 0.83319 0.92744 0.94903 0.94252 0.90986 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.70 71.98 0.70 -1.87 16 2 C 0.10 2.00 5.69 86.38 0.49 2.49 16 3 N -0.58 -17.67 2.76 -800.21 -2.21 -19.88 16 4 C 0.59 20.94 7.13 86.74 0.62 21.56 16 5 O -0.55 -24.86 12.48 -3.95 -0.05 -24.91 16 6 C -0.03 -0.75 6.64 42.17 0.28 -0.47 16 7 C -0.11 -3.20 10.87 22.76 0.25 -2.95 16 8 C -0.09 -2.00 6.97 40.36 0.28 -1.72 16 9 C 0.58 11.64 7.96 86.36 0.69 12.32 16 10 O -0.54 -15.04 17.99 -4.56 -0.08 -15.13 16 11 N -0.62 -4.96 5.37 -302.17 -1.62 -6.59 16 12 H 0.44 0.98 8.64 -92.71 -0.80 0.18 16 13 C 0.15 0.36 6.76 40.41 0.27 0.63 16 14 C -0.11 0.83 10.06 71.23 0.72 1.55 16 15 C -0.05 -0.31 10.68 82.44 0.88 0.57 16 16 N -0.17 -3.07 3.65 -183.59 -0.67 -3.74 16 17 N -0.21 -4.57 7.08 -48.48 -0.34 -4.91 16 18 C 0.14 4.91 4.80 45.55 0.22 5.13 16 19 C 0.11 4.95 8.10 83.17 0.67 5.62 16 20 N -0.65 -35.29 3.64 -738.11 -2.68 -37.98 16 21 C -0.29 -18.15 11.03 84.03 0.93 -17.23 16 22 H 0.05 3.64 8.06 -2.91 -0.02 3.61 16 23 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 24 N -0.97 -65.75 13.70 21.65 0.30 -65.45 16 25 Si 1.10 59.72 25.47 68.60 1.75 61.46 16 26 H -0.27 -13.50 6.96 99.48 0.69 -12.81 16 27 H -0.27 -14.61 5.62 99.48 0.56 -14.05 16 28 H -0.30 -16.25 7.11 99.48 0.71 -15.54 16 29 C 0.07 3.52 4.96 83.26 0.41 3.93 16 30 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.90 6.69 -2.39 -0.02 0.89 16 33 H 0.10 1.85 5.64 -2.39 -0.01 1.84 16 34 H 0.10 1.56 7.94 -2.38 -0.02 1.54 16 35 H 0.16 5.03 8.06 -2.91 -0.02 5.01 16 36 H 0.10 -0.93 7.89 -2.39 -0.02 -0.95 16 37 H 0.12 -1.17 8.14 -2.39 -0.02 -1.19 16 38 H 0.11 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H 0.22 -0.30 8.03 -2.91 -0.02 -0.32 16 40 H 0.15 4.51 7.96 -2.39 -0.02 4.49 16 41 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.03 1.59 6.49 -2.38 -0.02 1.57 16 43 H 0.25 16.83 8.73 -92.71 -0.81 16.02 16 44 H 0.07 3.73 4.13 -2.38 -0.01 3.72 16 45 H 0.04 1.99 6.08 -2.39 -0.01 1.97 16 Total: -1.00 -95.58 363.74 2.31 -93.26 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: 0.05 Total: -1.11 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 7.87 Total: 24.96 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -7.23 Total: -138.54 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.13 Total: -40.04 kcal Atomic # 14 Polarization: 59.72 SS G_CDS: 1.75 Total: 61.46 kcal Total: -95.58 2.31 -93.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950979362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.501 kcal (2) G-P(sol) polarization free energy of solvation -95.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds